CmoCh04G021180 (gene) Cucurbita moschata (Rifu)
The following sequences are available for this feature:
Legend: CDSexon Hold the cursor over a type above to highlight its positions in the sequence below.ATGCTTCCCTTTCAAACCCTTCTTCTTTCTCCTTCTTCTTCCTCCATGACATTGAAAATTTCACACCTCCTTTTTACCATGCTTTGGATCTCTCTTCTCATATTACTTCATCAACTAAACATCTTCAACGCCAAAATGAATTGCAAATCAATACCAAACATCACATTTTCCTATTCTTCCTCTTCTAACCATCCCTTGACTACAAGGAAAGTACTGGCTAGCAAGGTTGACTTCACTCCCTTTTTTCCCCACCCGCAGCCAAATCGACCCAGAAAGCATTCACGACCCGCTGTCAAACTCGAACCGCCCGACTCTGCTGCAGACGACGTTGATCCGCTCTACGGGGTTGAGAAGCGGCGTGTTCCTAATGGTCCAAACCCATTGCACAATTGA ATGCTTCCCTTTCAAACCCTTCTTCTTTCTCCTTCTTCTTCCTCCATGACATTGAAAATTTCACACCTCCTTTTTACCATGCTTTGGATCTCTCTTCTCATATTACTTCATCAACTAAACATCTTCAACGCCAAAATGAATTGCAAATCAATACCAAACATCACATTTTCCTATTCTTCCTCTTCTAACCATCCCTTGACTACAAGGAAAGTACTGGCTAGCAAGGTTGACTTCACTCCCTTTTTTCCCCACCCGCAGCCAAATCGACCCAGAAAGCATTCACGACCCGCTGTCAAACTCGAACCGCCCGACTCTGCTGCAGACGACGTTGATCCGCTCTACGGGGTTGAGAAGCGGCGTGTTCCTAATGGTCCAAACCCATTGCACAATTGA ATGCTTCCCTTTCAAACCCTTCTTCTTTCTCCTTCTTCTTCCTCCATGACATTGAAAATTTCACACCTCCTTTTTACCATGCTTTGGATCTCTCTTCTCATATTACTTCATCAACTAAACATCTTCAACGCCAAAATGAATTGCAAATCAATACCAAACATCACATTTTCCTATTCTTCCTCTTCTAACCATCCCTTGACTACAAGGAAAGTACTGGCTAGCAAGGTTGACTTCACTCCCTTTTTTCCCCACCCGCAGCCAAATCGACCCAGAAAGCATTCACGACCCGCTGTCAAACTCGAACCGCCCGACTCTGCTGCAGACGACGTTGATCCGCTCTACGGGGTTGAGAAGCGGCGTGTTCCTAATGGTCCAAACCCATTGCACAATTGA
BLAST of CmoCh04G021180 vs. Swiss-Prot
Match: CLE12_ARATH (CLAVATA3/ESR (CLE)-related protein 12 OS=Arabidopsis thaliana GN=CLE12 PE=2 SV=1) HSP 1 Score: 75.5 bits (184), Expect = 4.8e-13 Identity = 55/129 (42.64%), Postives = 74/129 (57.36%), Query Frame = 1
BLAST of CmoCh04G021180 vs. Swiss-Prot
Match: CLE13_ARATH (CLAVATA3/ESR (CLE)-related protein 13 OS=Arabidopsis thaliana GN=CLE13 PE=2 SV=1) HSP 1 Score: 52.4 bits (124), Expect = 4.4e-06 Identity = 43/117 (36.75%), Postives = 62/117 (52.99%), Query Frame = 1
BLAST of CmoCh04G021180 vs. TrEMBL
Match: A0A0A0KPQ3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G577440 PE=4 SV=1) HSP 1 Score: 155.6 bits (392), Expect = 4.1e-35 Identity = 84/117 (71.79%), Postives = 91/117 (77.78%), Query Frame = 1
BLAST of CmoCh04G021180 vs. TrEMBL
Match: A0A061EC34_THECC (Clavata3/esr-related 12, putative OS=Theobroma cacao GN=TCM_011877 PE=4 SV=1) HSP 1 Score: 95.9 bits (237), Expect = 3.9e-17 Identity = 60/117 (51.28%), Postives = 80/117 (68.38%), Query Frame = 1
BLAST of CmoCh04G021180 vs. TrEMBL
Match: V4TMC3_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10033717mg PE=4 SV=1) HSP 1 Score: 93.2 bits (230), Expect = 2.5e-16 Identity = 56/124 (45.16%), Postives = 78/124 (62.90%), Query Frame = 1
BLAST of CmoCh04G021180 vs. TrEMBL
Match: B9HIY0_POPTR (Clavata3/esr-related 12 family protein OS=Populus trichocarpa GN=POPTR_0008s11450g PE=4 SV=1) HSP 1 Score: 84.0 bits (206), Expect = 1.5e-13 Identity = 55/117 (47.01%), Postives = 69/117 (58.97%), Query Frame = 1
BLAST of CmoCh04G021180 vs. TrEMBL
Match: V7BG00_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_007G101800g PE=4 SV=1) HSP 1 Score: 82.8 bits (203), Expect = 3.4e-13 Identity = 54/116 (46.55%), Postives = 70/116 (60.34%), Query Frame = 1
BLAST of CmoCh04G021180 vs. TAIR10
Match: AT1G68795.1 (AT1G68795.1 CLAVATA3/ESR-RELATED 12) HSP 1 Score: 75.5 bits (184), Expect = 2.7e-14 Identity = 55/129 (42.64%), Postives = 74/129 (57.36%), Query Frame = 1
BLAST of CmoCh04G021180 vs. TAIR10
Match: AT1G73965.1 (AT1G73965.1 CLAVATA3/ESR-RELATED 13) HSP 1 Score: 52.4 bits (124), Expect = 2.5e-07 Identity = 43/117 (36.75%), Postives = 62/117 (52.99%), Query Frame = 1
BLAST of CmoCh04G021180 vs. NCBI nr
Match: gi|700196376|gb|KGN51553.1| (hypothetical protein Csa_5G577440 [Cucumis sativus]) HSP 1 Score: 155.6 bits (392), Expect = 5.9e-35 Identity = 84/117 (71.79%), Postives = 91/117 (77.78%), Query Frame = 1
BLAST of CmoCh04G021180 vs. NCBI nr
Match: gi|590701118|ref|XP_007046321.1| (Clavata3/esr-related 12, putative [Theobroma cacao]) HSP 1 Score: 95.9 bits (237), Expect = 5.5e-17 Identity = 60/117 (51.28%), Postives = 80/117 (68.38%), Query Frame = 1
BLAST of CmoCh04G021180 vs. NCBI nr
Match: gi|567890451|ref|XP_006437746.1| (hypothetical protein CICLE_v10033717mg [Citrus clementina]) HSP 1 Score: 93.2 bits (230), Expect = 3.6e-16 Identity = 56/124 (45.16%), Postives = 78/124 (62.90%), Query Frame = 1
BLAST of CmoCh04G021180 vs. NCBI nr
Match: gi|823264670|ref|XP_012465079.1| (PREDICTED: CLAVATA3/ESR (CLE)-related protein 13 [Gossypium raimondii]) HSP 1 Score: 92.4 bits (228), Expect = 6.1e-16 Identity = 67/140 (47.86%), Postives = 86/140 (61.43%), Query Frame = 1
BLAST of CmoCh04G021180 vs. NCBI nr
Match: gi|697184081|ref|XP_009601067.1| (PREDICTED: CLAVATA3/ESR (CLE)-related protein 13-like [Nicotiana tomentosiformis]) HSP 1 Score: 84.3 bits (207), Expect = 1.7e-13 Identity = 53/117 (45.30%), Postives = 72/117 (61.54%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene: |