CmoCh04G021180 (gene) Cucurbita moschata (Rifu)

NameCmoCh04G021180
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionCLAVATA3/ESR (CLE)-related protein 12
LocationCmo_Chr04 : 13757246 .. 13757638 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTTCCCTTTCAAACCCTTCTTCTTTCTCCTTCTTCTTCCTCCATGACATTGAAAATTTCACACCTCCTTTTTACCATGCTTTGGATCTCTCTTCTCATATTACTTCATCAACTAAACATCTTCAACGCCAAAATGAATTGCAAATCAATACCAAACATCACATTTTCCTATTCTTCCTCTTCTAACCATCCCTTGACTACAAGGAAAGTACTGGCTAGCAAGGTTGACTTCACTCCCTTTTTTCCCCACCCGCAGCCAAATCGACCCAGAAAGCATTCACGACCCGCTGTCAAACTCGAACCGCCCGACTCTGCTGCAGACGACGTTGATCCGCTCTACGGGGTTGAGAAGCGGCGTGTTCCTAATGGTCCAAACCCATTGCACAATTGA

mRNA sequence

ATGCTTCCCTTTCAAACCCTTCTTCTTTCTCCTTCTTCTTCCTCCATGACATTGAAAATTTCACACCTCCTTTTTACCATGCTTTGGATCTCTCTTCTCATATTACTTCATCAACTAAACATCTTCAACGCCAAAATGAATTGCAAATCAATACCAAACATCACATTTTCCTATTCTTCCTCTTCTAACCATCCCTTGACTACAAGGAAAGTACTGGCTAGCAAGGTTGACTTCACTCCCTTTTTTCCCCACCCGCAGCCAAATCGACCCAGAAAGCATTCACGACCCGCTGTCAAACTCGAACCGCCCGACTCTGCTGCAGACGACGTTGATCCGCTCTACGGGGTTGAGAAGCGGCGTGTTCCTAATGGTCCAAACCCATTGCACAATTGA

Coding sequence (CDS)

ATGCTTCCCTTTCAAACCCTTCTTCTTTCTCCTTCTTCTTCCTCCATGACATTGAAAATTTCACACCTCCTTTTTACCATGCTTTGGATCTCTCTTCTCATATTACTTCATCAACTAAACATCTTCAACGCCAAAATGAATTGCAAATCAATACCAAACATCACATTTTCCTATTCTTCCTCTTCTAACCATCCCTTGACTACAAGGAAAGTACTGGCTAGCAAGGTTGACTTCACTCCCTTTTTTCCCCACCCGCAGCCAAATCGACCCAGAAAGCATTCACGACCCGCTGTCAAACTCGAACCGCCCGACTCTGCTGCAGACGACGTTGATCCGCTCTACGGGGTTGAGAAGCGGCGTGTTCCTAATGGTCCAAACCCATTGCACAATTGA
BLAST of CmoCh04G021180 vs. Swiss-Prot
Match: CLE12_ARATH (CLAVATA3/ESR (CLE)-related protein 12 OS=Arabidopsis thaliana GN=CLE12 PE=2 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 4.8e-13
Identity = 55/129 (42.64%), Postives = 74/129 (57.36%), Query Frame = 1

Query: 7   LLLSPSSSSMTLKISHLLFTMLWISLL-ILLHQLNIFNAK----MNCKSIPNITFSYSSS 66
           +L   SSSSM LK S +LF +LW+SL  +LLH L   N +    +N      +   Y S 
Sbjct: 1   MLRISSSSSMALKFSQILFIVLWLSLFFLLLHHLYSLNFRRLYSLNAVEPSLLKQHYRS- 60

Query: 67  SNHPLTTRKVLASKVDFTPFFPHPQPNRPRKHSRPAVKLEPPDSAADDVDPLYGVEKRRV 126
             + L +RKVL+ + DFTPF  H + N    H R   + +      D++DP YGVEKRRV
Sbjct: 61  --YRLVSRKVLSDRFDFTPF--HSRDNSRHNH-RSGEQYD-----GDEIDPRYGVEKRRV 118

Query: 127 PNGPNPLHN 131
           P+GPNPLH+
Sbjct: 121 PSGPNPLHH 118

BLAST of CmoCh04G021180 vs. Swiss-Prot
Match: CLE13_ARATH (CLAVATA3/ESR (CLE)-related protein 13 OS=Arabidopsis thaliana GN=CLE13 PE=2 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 4.4e-06
Identity = 43/117 (36.75%), Postives = 62/117 (52.99%), Query Frame = 1

Query: 17  TLKISHLLFTMLWISLLILLHQLNIFN--AKMNCKSIPNITFSYSSSSNHPLTTRKVLAS 76
           T ++SH+L  +LWISLLI +  + +F   +       P+   +  +    P   R+ LA 
Sbjct: 3   TTRVSHVLGFLLWISLLIFV-SIGLFGNFSSKPINPFPSPVITLPALYYRP--GRRALAV 62

Query: 77  KV-DFTPFFPHPQPNRPRKHSRPAVKLEPPDSAADDVDPLYGVEKRRVPNGPNPLHN 131
           K  DFTPF    + +  RK + PA           ++DP YGVEKR VP+GPNPLH+
Sbjct: 63  KTFDFTPFLKDLRRSNHRK-ALPA--------GGSEIDPRYGVEKRLVPSGPNPLHH 107

BLAST of CmoCh04G021180 vs. TrEMBL
Match: A0A0A0KPQ3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G577440 PE=4 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 4.1e-35
Identity = 84/117 (71.79%), Postives = 91/117 (77.78%), Query Frame = 1

Query: 16  MTLKISHLLFTMLWISLLILL-HQLNIFNAKMNCKSIPNITFSY-SSSSNHPLTTRKVLA 75
           MTLKISH LFTMLWISLL+LL H+LNIF AKMN +  P ITFSY SSSSNHPL TRKVL 
Sbjct: 1   MTLKISHFLFTMLWISLLLLLLHELNIFKAKMNHRPTPTITFSYYSSSSNHPLITRKVLT 60

Query: 76  SKVDFTPFFPHPQPNRPRKHSRPAVKLEPPDSAADDVDPLYGVEKRRVPNGPNPLHN 131
           SKVDFTPFF H  PN+PRKHS P       + A  D+DP YGVEKRRVP GPNPLH+
Sbjct: 61  SKVDFTPFFRHRHPNQPRKHSHPTDTNVVDEPAPSDIDPRYGVEKRRVPTGPNPLHH 117

BLAST of CmoCh04G021180 vs. TrEMBL
Match: A0A061EC34_THECC (Clavata3/esr-related 12, putative OS=Theobroma cacao GN=TCM_011877 PE=4 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 3.9e-17
Identity = 60/117 (51.28%), Postives = 80/117 (68.38%), Query Frame = 1

Query: 16  MTLKISHLLF-TMLWISLL-ILLHQLNIFNAKMNCKSIPNITFSYSSSSNHPLTTRKVLA 75
           M  K+SHL+F T+LW+SLL +LLH+ + F  K+N +   +ITFS  S S +PL +RKV+A
Sbjct: 1   MAWKVSHLVFFTVLWLSLLFLLLHEFHSFKFKINGRQASSITFS--SLSRNPLISRKVVA 60

Query: 76  SKVDFTPFFPHPQPNRPRKHSRPAVKLEPPDSAADDVDPLYGVEKRRVPNGPNPLHN 131
            K DFTPF  H Q  +  KHS P +K +   +A  ++DP YGVEKR VP GPNPLH+
Sbjct: 61  GKFDFTPFQKHHQQEQQDKHS-PDMKRQ-SQAADTEIDPRYGVEKRLVPTGPNPLHH 113

BLAST of CmoCh04G021180 vs. TrEMBL
Match: V4TMC3_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10033717mg PE=4 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 2.5e-16
Identity = 56/124 (45.16%), Postives = 78/124 (62.90%), Query Frame = 1

Query: 16  MTLKISHLLFTMLWISLLILL-HQLNIFNAKMNCKSIPNITFSYSSS-----SNHPLTTR 75
           M L+ SHL+F  LW+SLL+ L H+L  F +K+N  +  +IT + S++     S +PL  R
Sbjct: 1   MALRFSHLIFITLWLSLLLFLFHELYNFKSKINTNTKQSITTTTSNTIHYSLSKYPLINR 60

Query: 76  KVLASKVDFTPFFPHPQPNRPRKHSRPAVKLEPP---DSAADDVDPLYGVEKRRVPNGPN 131
           KVLASK DFTPF  H + + P +  +P    +P    D  + ++DP YGVEKR VP GPN
Sbjct: 61  KVLASKFDFTPFQKHHEKSSPSQELQPKDHHQPAPAADHGSAEIDPRYGVEKRLVPTGPN 120

BLAST of CmoCh04G021180 vs. TrEMBL
Match: B9HIY0_POPTR (Clavata3/esr-related 12 family protein OS=Populus trichocarpa GN=POPTR_0008s11450g PE=4 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 1.5e-13
Identity = 55/117 (47.01%), Postives = 69/117 (58.97%), Query Frame = 1

Query: 16  MTLKISHLLFTMLWISLLIL-LHQLNIFNAKMNCKSIPNITFSYSSSSNHPLTTRKVLAS 75
           M LKISH+   +L + LL+L  H+L  F +K+N         S SS S+HP   RKVL S
Sbjct: 1   MALKISHIPCALLCLYLLLLAFHELRNFKSKINNNKDQINNISSSSISHHPFHNRKVLVS 60

Query: 76  KVDFTPFFPHPQPNRPRKHSRPAVKLEPPDSAA-DDVDPLYGVEKRRVPNGPNPLHN 131
           K DFTPF    Q +R ++H  P    E    AA  ++DP YGVEKR VP GPNPLH+
Sbjct: 61  KFDFTPF----QKHRQQQHENPLPDEEVHKKAARSEIDPRYGVEKRLVPTGPNPLHH 113

BLAST of CmoCh04G021180 vs. TrEMBL
Match: V7BG00_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_007G101800g PE=4 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 3.4e-13
Identity = 54/116 (46.55%), Postives = 70/116 (60.34%), Query Frame = 1

Query: 16  MTLKISHLLFTMLWISLLILL-HQLNIFNAKMNCKSIPNITFSYSSSSNHPLTTRKVLAS 75
           M  KIS  +  +L +SLL+L+ H+     +K+N       T S SSS +H L  RK LA+
Sbjct: 1   MAFKISQAVHILLLMSLLLLVFHEYYNLKSKINKNHTTQPTHSISSS-HHLLVGRKFLAT 60

Query: 76  KVDFTPFFPHPQPNRPRKHSRPAVKLEPPDSAADDVDPLYGVEKRRVPNGPNPLHN 131
           K DF+PFF H       KH +P V +  PD +  D+DP YGVEKRRVP GPNPLH+
Sbjct: 61  KFDFSPFFKH-----HHKHHQPGVAVH-PDPSDTDIDPRYGVEKRRVPTGPNPLHH 109

BLAST of CmoCh04G021180 vs. TAIR10
Match: AT1G68795.1 (AT1G68795.1 CLAVATA3/ESR-RELATED 12)

HSP 1 Score: 75.5 bits (184), Expect = 2.7e-14
Identity = 55/129 (42.64%), Postives = 74/129 (57.36%), Query Frame = 1

Query: 7   LLLSPSSSSMTLKISHLLFTMLWISLL-ILLHQLNIFNAK----MNCKSIPNITFSYSSS 66
           +L   SSSSM LK S +LF +LW+SL  +LLH L   N +    +N      +   Y S 
Sbjct: 1   MLRISSSSSMALKFSQILFIVLWLSLFFLLLHHLYSLNFRRLYSLNAVEPSLLKQHYRS- 60

Query: 67  SNHPLTTRKVLASKVDFTPFFPHPQPNRPRKHSRPAVKLEPPDSAADDVDPLYGVEKRRV 126
             + L +RKVL+ + DFTPF  H + N    H R   + +      D++DP YGVEKRRV
Sbjct: 61  --YRLVSRKVLSDRFDFTPF--HSRDNSRHNH-RSGEQYD-----GDEIDPRYGVEKRRV 118

Query: 127 PNGPNPLHN 131
           P+GPNPLH+
Sbjct: 121 PSGPNPLHH 118

BLAST of CmoCh04G021180 vs. TAIR10
Match: AT1G73965.1 (AT1G73965.1 CLAVATA3/ESR-RELATED 13)

HSP 1 Score: 52.4 bits (124), Expect = 2.5e-07
Identity = 43/117 (36.75%), Postives = 62/117 (52.99%), Query Frame = 1

Query: 17  TLKISHLLFTMLWISLLILLHQLNIFN--AKMNCKSIPNITFSYSSSSNHPLTTRKVLAS 76
           T ++SH+L  +LWISLLI +  + +F   +       P+   +  +    P   R+ LA 
Sbjct: 3   TTRVSHVLGFLLWISLLIFV-SIGLFGNFSSKPINPFPSPVITLPALYYRP--GRRALAV 62

Query: 77  KV-DFTPFFPHPQPNRPRKHSRPAVKLEPPDSAADDVDPLYGVEKRRVPNGPNPLHN 131
           K  DFTPF    + +  RK + PA           ++DP YGVEKR VP+GPNPLH+
Sbjct: 63  KTFDFTPFLKDLRRSNHRK-ALPA--------GGSEIDPRYGVEKRLVPSGPNPLHH 107

BLAST of CmoCh04G021180 vs. NCBI nr
Match: gi|700196376|gb|KGN51553.1| (hypothetical protein Csa_5G577440 [Cucumis sativus])

HSP 1 Score: 155.6 bits (392), Expect = 5.9e-35
Identity = 84/117 (71.79%), Postives = 91/117 (77.78%), Query Frame = 1

Query: 16  MTLKISHLLFTMLWISLLILL-HQLNIFNAKMNCKSIPNITFSY-SSSSNHPLTTRKVLA 75
           MTLKISH LFTMLWISLL+LL H+LNIF AKMN +  P ITFSY SSSSNHPL TRKVL 
Sbjct: 1   MTLKISHFLFTMLWISLLLLLLHELNIFKAKMNHRPTPTITFSYYSSSSNHPLITRKVLT 60

Query: 76  SKVDFTPFFPHPQPNRPRKHSRPAVKLEPPDSAADDVDPLYGVEKRRVPNGPNPLHN 131
           SKVDFTPFF H  PN+PRKHS P       + A  D+DP YGVEKRRVP GPNPLH+
Sbjct: 61  SKVDFTPFFRHRHPNQPRKHSHPTDTNVVDEPAPSDIDPRYGVEKRRVPTGPNPLHH 117

BLAST of CmoCh04G021180 vs. NCBI nr
Match: gi|590701118|ref|XP_007046321.1| (Clavata3/esr-related 12, putative [Theobroma cacao])

HSP 1 Score: 95.9 bits (237), Expect = 5.5e-17
Identity = 60/117 (51.28%), Postives = 80/117 (68.38%), Query Frame = 1

Query: 16  MTLKISHLLF-TMLWISLL-ILLHQLNIFNAKMNCKSIPNITFSYSSSSNHPLTTRKVLA 75
           M  K+SHL+F T+LW+SLL +LLH+ + F  K+N +   +ITFS  S S +PL +RKV+A
Sbjct: 1   MAWKVSHLVFFTVLWLSLLFLLLHEFHSFKFKINGRQASSITFS--SLSRNPLISRKVVA 60

Query: 76  SKVDFTPFFPHPQPNRPRKHSRPAVKLEPPDSAADDVDPLYGVEKRRVPNGPNPLHN 131
            K DFTPF  H Q  +  KHS P +K +   +A  ++DP YGVEKR VP GPNPLH+
Sbjct: 61  GKFDFTPFQKHHQQEQQDKHS-PDMKRQ-SQAADTEIDPRYGVEKRLVPTGPNPLHH 113

BLAST of CmoCh04G021180 vs. NCBI nr
Match: gi|567890451|ref|XP_006437746.1| (hypothetical protein CICLE_v10033717mg [Citrus clementina])

HSP 1 Score: 93.2 bits (230), Expect = 3.6e-16
Identity = 56/124 (45.16%), Postives = 78/124 (62.90%), Query Frame = 1

Query: 16  MTLKISHLLFTMLWISLLILL-HQLNIFNAKMNCKSIPNITFSYSSS-----SNHPLTTR 75
           M L+ SHL+F  LW+SLL+ L H+L  F +K+N  +  +IT + S++     S +PL  R
Sbjct: 1   MALRFSHLIFITLWLSLLLFLFHELYNFKSKINTNTKQSITTTTSNTIHYSLSKYPLINR 60

Query: 76  KVLASKVDFTPFFPHPQPNRPRKHSRPAVKLEPP---DSAADDVDPLYGVEKRRVPNGPN 131
           KVLASK DFTPF  H + + P +  +P    +P    D  + ++DP YGVEKR VP GPN
Sbjct: 61  KVLASKFDFTPFQKHHEKSSPSQELQPKDHHQPAPAADHGSAEIDPRYGVEKRLVPTGPN 120

BLAST of CmoCh04G021180 vs. NCBI nr
Match: gi|823264670|ref|XP_012465079.1| (PREDICTED: CLAVATA3/ESR (CLE)-related protein 13 [Gossypium raimondii])

HSP 1 Score: 92.4 bits (228), Expect = 6.1e-16
Identity = 67/140 (47.86%), Postives = 86/140 (61.43%), Query Frame = 1

Query: 1   MLPFQTLLLSPSSSSMTLKISHLL-FTMLWISLLIL-LHQL-NIFNAKMNCKSI---PN- 60
           MLP Q L+L  +S  M  K+SH+L FT+LW+SLL+L LH+  NI N   N  +    PN 
Sbjct: 1   MLPLQALMLPQNSPCMAWKVSHMLIFTILWLSLLLLWLHEFQNILNFNFNTNTSGKQPNP 60

Query: 61  ITFSYSSSSNHPLTTRK-VLASKVDFTPFFPHPQ--PNRPRKHSRPAVKLEPPDSAADDV 120
            TFS  SS  +P  TRK V A+K DFTPF  H    P++ +K ++PA          ++V
Sbjct: 61  TTFSLLSSHRNPFITRKAVAAAKFDFTPFQKHQDQAPDQAKKQTKPA---------DNEV 120

Query: 121 DPLYGVEKRRVPNGPNPLHN 131
           DP YGVEKR VP GPNPLH+
Sbjct: 121 DPRYGVEKRLVPTGPNPLHH 131

BLAST of CmoCh04G021180 vs. NCBI nr
Match: gi|697184081|ref|XP_009601067.1| (PREDICTED: CLAVATA3/ESR (CLE)-related protein 13-like [Nicotiana tomentosiformis])

HSP 1 Score: 84.3 bits (207), Expect = 1.7e-13
Identity = 53/117 (45.30%), Postives = 72/117 (61.54%), Query Frame = 1

Query: 16  MTLKISHLLFTMLWISLLILLHQLNIFNAKMNCKSIPNITFSYSSSSNHPLTTRK--VLA 75
           M LK+ H++  +LW+SLL+LL Q   F  K N KSI     +YS S+NHPL T++  ++A
Sbjct: 1   MGLKVPHIICFILWLSLLVLLFQEFKF-LKTNRKSI-----AYSPSNNHPLFTQRKALIA 60

Query: 76  SKVDFTPFFPHPQPNRPRKHSRPAVKLEPPDSAADDVDPLYGVEKRRVPNGPNPLHN 131
           S  DFTPF  +   +   +   P    E P+ A  ++DP YGVEKR VP GPNPLH+
Sbjct: 61  SNFDFTPFVKNRHHHHHHRKHSPVDVPERPEPAGSEIDPRYGVEKRLVPTGPNPLHH 111

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
CLE12_ARATH4.8e-1342.64CLAVATA3/ESR (CLE)-related protein 12 OS=Arabidopsis thaliana GN=CLE12 PE=2 SV=1[more]
CLE13_ARATH4.4e-0636.75CLAVATA3/ESR (CLE)-related protein 13 OS=Arabidopsis thaliana GN=CLE13 PE=2 SV=1[more]
Match NameE-valueIdentityDescription
A0A0A0KPQ3_CUCSA4.1e-3571.79Uncharacterized protein OS=Cucumis sativus GN=Csa_5G577440 PE=4 SV=1[more]
A0A061EC34_THECC3.9e-1751.28Clavata3/esr-related 12, putative OS=Theobroma cacao GN=TCM_011877 PE=4 SV=1[more]
V4TMC3_9ROSI2.5e-1645.16Uncharacterized protein OS=Citrus clementina GN=CICLE_v10033717mg PE=4 SV=1[more]
B9HIY0_POPTR1.5e-1347.01Clavata3/esr-related 12 family protein OS=Populus trichocarpa GN=POPTR_0008s1145... [more]
V7BG00_PHAVU3.4e-1346.55Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_007G101800g PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT1G68795.12.7e-1442.64 CLAVATA3/ESR-RELATED 12[more]
AT1G73965.12.5e-0736.75 CLAVATA3/ESR-RELATED 13[more]
Match NameE-valueIdentityDescription
gi|700196376|gb|KGN51553.1|5.9e-3571.79hypothetical protein Csa_5G577440 [Cucumis sativus][more]
gi|590701118|ref|XP_007046321.1|5.5e-1751.28Clavata3/esr-related 12, putative [Theobroma cacao][more]
gi|567890451|ref|XP_006437746.1|3.6e-1645.16hypothetical protein CICLE_v10033717mg [Citrus clementina][more]
gi|823264670|ref|XP_012465079.1|6.1e-1647.86PREDICTED: CLAVATA3/ESR (CLE)-related protein 13 [Gossypium raimondii][more]
gi|697184081|ref|XP_009601067.1|1.7e-1345.30PREDICTED: CLAVATA3/ESR (CLE)-related protein 13-like [Nicotiana tomentosiformis... [more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh04G021180.1CmoCh04G021180.1mRNA


Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR34359FAMILY NOT NAMEDcoord: 14..130
score: 1.4
NoneNo IPR availablePANTHERPTHR34359:SF1CLAVATA3/ESR (CLE)-RELATED PROTEIN 11-RELATEDcoord: 14..130
score: 1.4

The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh04G021180CmaCh04G019960Cucurbita maxima (Rimu)cmacmoB729
CmoCh04G021180Lsi09G006080Bottle gourd (USVL1VR-Ls)cmolsiB613
CmoCh04G021180Cp4.1LG01g17760Cucurbita pepo (Zucchini)cmocpeB685
CmoCh04G021180Bhi12G000711Wax gourdcmowgoB0827
CmoCh04G021180Carg27162Silver-seed gourdcarcmoB0683
The following gene(s) are paralogous to this gene:

None