Cp4.1LG01g17760 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG01g17760
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	CLAVATA3/ESR-RELATED 12
Location	Cp4.1LG01 : 12954495 .. 12954794 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATTGCAAATCAATACCAAACATCACATTTTCCTATTCTTCCTCCTCTAACCATCCCTTGACTACAAGGAAAGTACTTGCTAGCAAGGTTGACTTCACTCCCTTTTTTCCCCACCCGAAGCCAAATCGACTCAGAAAGCATTCACGACCCGCTGTCAAACTTGAACCGCCCGACTCTGCTGCAGACGACGTTGATCCGCTCTACGGGGTTGAGAAGCGGCGTGTTCCTAGGTCCAAACCCATTGCACAATTGATGCATTCTCTGGCCATGGGAGAAGAAGAAAAGGTTCATATATAG

mRNA sequence

ATGAATTGCAAATCAATACCAAACATCACATTTTCCTATTCTTCCTCCTCTAACCATCCCTTGACTACAAGGAAAGTACTTGCTAGCAAGGTTGACTTCACTCCCTTTTTTCCCCACCCGAAGCCAAATCGACTCAGAAAGCATTCACGACCCGCTGTCAAACTTGAACCGCCCGACTCTGCTGCAGACGACGTTGATCCGCTCTACGGGGTTGAGAAGCGGCGTGTTCCTAGGTCCAAACCCATTGCACAATTGATGCATTCTCTGGCCATGGGAGAAGAAGAAAAGGTTCATATATAG

Coding sequence (CDS)

ATGAATTGCAAATCAATACCAAACATCACATTTTCCTATTCTTCCTCCTCTAACCATCCCTTGACTACAAGGAAAGTACTTGCTAGCAAGGTTGACTTCACTCCCTTTTTTCCCCACCCGAAGCCAAATCGACTCAGAAAGCATTCACGACCCGCTGTCAAACTTGAACCGCCCGACTCTGCTGCAGACGACGTTGATCCGCTCTACGGGGTTGAGAAGCGGCGTGTTCCTAGGTCCAAACCCATTGCACAATTGATGCATTCTCTGGCCATGGGAGAAGAAGAAAAGGTTCATATATAG

Protein sequence

MNCKSIPNITFSYSSSSNHPLTTRKVLASKVDFTPFFPHPKPNRLRKHSRPAVKLEPPDSAADDVDPLYGVEKRRVPRSKPIAQLMHSLAMGEEEKVHI

Homology

[Close]

BLAST of Cp4.1LG01g17760 vs. TrEMBL
Match: A0A0A0KPQ3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G577440 PE=4 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 2.9e-17
Identity = 51/78 (65.38%), Postives = 55/78 (70.51%), Query Frame = 1


Query: 1   MNCKSIPNITFSY-SSSSNHPLTTRKVLASKVDFTPFFPHPKPNRLRKHSRPAVKLEPPD 60
           MN +  P ITFSY SSSSNHPL TRKVL SKVDFTPFF H  PN+ RKHS P       +
Sbjct: 32  MNHRPTPTITFSYYSSSSNHPLITRKVLTSKVDFTPFFRHRHPNQPRKHSHPTDTNVVDE 91

Query: 61  SAADDVDPLYGVEKRRVP 78
            A  D+DP YGVEKRRVP
Sbjct: 92  PAPSDIDPRYGVEKRRVP 109

[Close]

BLAST of Cp4.1LG01g17760 vs. TrEMBL
Match: V7BG00_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_007G101800g PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 3.6e-07
Identity = 34/63 (53.97%), Postives = 41/63 (65.08%), Query Frame = 1


Query: 15  SSSNHPLTTRKVLASKVDFTPFFPHPKPNRLRKHSRPAVKLEPPDSAADDVDPLYGVEKR 74
           SSS+H L  RK LA+K DF+PFF H       KH +P V +  PD +  D+DP YGVEKR
Sbjct: 45  SSSHHLLVGRKFLATKFDFSPFFKHH-----HKHHQPGVAVH-PDPSDTDIDPRYGVEKR 101

Query: 75  RVP 78
           RVP
Sbjct: 105 RVP 101

[Close]

BLAST of Cp4.1LG01g17760 vs. NCBI nr
Match: gi|700196376|gb|KGN51553.1| (hypothetical protein Csa_5G577440 [Cucumis sativus])

HSP 1 Score: 95.9 bits (237), Expect = 4.2e-17
Identity = 51/78 (65.38%), Postives = 55/78 (70.51%), Query Frame = 1


Query: 1   MNCKSIPNITFSY-SSSSNHPLTTRKVLASKVDFTPFFPHPKPNRLRKHSRPAVKLEPPD 60
           MN +  P ITFSY SSSSNHPL TRKVL SKVDFTPFF H  PN+ RKHS P       +
Sbjct: 32  MNHRPTPTITFSYYSSSSNHPLITRKVLTSKVDFTPFFRHRHPNQPRKHSHPTDTNVVDE 91

Query: 61  SAADDVDPLYGVEKRRVP 78
            A  D+DP YGVEKRRVP
Sbjct: 92  PAPSDIDPRYGVEKRRVP 109

[Close]

BLAST of Cp4.1LG01g17760 vs. NCBI nr
Match: gi|593686236|ref|XP_007143789.1| (hypothetical protein PHAVU_007G101800g [Phaseolus vulgaris])

HSP 1 Score: 62.4 bits (150), Expect = 5.2e-07
Identity = 34/63 (53.97%), Postives = 41/63 (65.08%), Query Frame = 1


Query: 15  SSSNHPLTTRKVLASKVDFTPFFPHPKPNRLRKHSRPAVKLEPPDSAADDVDPLYGVEKR 74
           SSS+H L  RK LA+K DF+PFF H       KH +P V +  PD +  D+DP YGVEKR
Sbjct: 45  SSSHHLLVGRKFLATKFDFSPFFKHH-----HKHHQPGVAVH-PDPSDTDIDPRYGVEKR 101

Query: 75  RVP 78
           RVP
Sbjct: 105 RVP 101

The following BLAST results are available for this feature:

BLAST of Cp4.1LG01g17760 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG01g17760 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KPQ3_CUCSA	2.9e-17	65.38	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G577440 PE=4 SV=1	[more]
V7BG00_PHAVU	3.6e-07	53.97	Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_007G101800g PE=4 SV=1	[more]

BLAST of Cp4.1LG01g17760 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG01g17760 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700196376\|gb\|KGN51553.1\|	4.2e-17	65.38	hypothetical protein Csa_5G577440 [Cucumis sativus]	[more]
gi\|593686236\|ref\|XP_007143789.1\|	5.2e-07	53.97	hypothetical protein PHAVU_007G101800g [Phaseolus vulgaris]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG01g17760.1	Cp4.1LG01g17760.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34359	FAMILY NOT NAMED	coord: 12..77 score: 9.9
None	No IPR available	PANTHER	PTHR34359:SF1	CLAVATA3/ESR (CLE)-RELATED PROTEIN 11-RELATED	coord: 12..77 score: 9.9

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG01g17760	CmoCh04G021180	Cucurbita moschata (Rifu)	cmocpeB685
Cp4.1LG01g17760	Carg27162	Silver-seed gourd	carcpeB0708

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG01g17760	Wax gourd	cpewgoB0574
Cp4.1LG01g17760	Cucurbita pepo (Zucchini)	cpecpeB037
Cp4.1LG01g17760	Cucumber (Gy14) v1	cgycpeB0757
Cp4.1LG01g17760	Cucurbita maxima (Rimu)	cmacpeB436
Cp4.1LG01g17760	Cucurbita maxima (Rimu)	cmacpeB721
Cp4.1LG01g17760	Cucurbita moschata (Rifu)	cmocpeB400
Cp4.1LG01g17760	Cucurbita moschata (Rifu)	cmocpeB673
Cp4.1LG01g17760	Cucurbita moschata (Rifu)	cmocpeB680
Cp4.1LG01g17760	Cucurbita moschata (Rifu)	cmocpeB682
Cp4.1LG01g17760	Wild cucumber (PI 183967)	cpecpiB429
Cp4.1LG01g17760	Cucumber (Chinese Long) v2	cpecuB434
Cp4.1LG01g17760	Bottle gourd (USVL1VR-Ls)	cpelsiB313
Cp4.1LG01g17760	Watermelon (Charleston Gray)	cpewcgB400
Cp4.1LG01g17760	Watermelon (97103) v1	cpewmB439
Cp4.1LG01g17760	Melon (DHL92) v3.5.1	cpemeB387
Cp4.1LG01g17760	Cucumber (Gy14) v2	cgybcpeB640
Cp4.1LG01g17760	Melon (DHL92) v3.6.1	cpemedB448
Cp4.1LG01g17760	Silver-seed gourd	carcpeB1450
Cp4.1LG01g17760	Cucumber (Chinese Long) v3	cpecucB0535