Carg27162 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg27162
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	CLAVATA3/ESR (CLE)-related protein
Location	Cucurbita_argyrosperma_scaffold_151 : 167494 .. 167751 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATTGCAAATCAATACCAAACATCACATTTTCCTATTCTTCCTCTTCTAACCATCCCTTGACTACAAGGAAAGAACTGGCTAGCAAGGTTGACTTCACTCCCTTTTTTCCCCACCCGCAGCCAAATCGACCCAGAAAGCATTCACGACCCGCTGTCAAACTCGAACCGCCCGACTCTGCTGCAGACGACGTTGATCCGCTCTACGGGGTTGAGAAGCGGCGTGTTCCTAATGGTCCAAACCCATTGCACAATTGA

mRNA sequence

ATGAATTGCAAATCAATACCAAACATCACATTTTCCTATTCTTCCTCTTCTAACCATCCCTTGACTACAAGGAAAGAACTGGCTAGCAAGGTTGACTTCACTCCCTTTTTTCCCCACCCGCAGCCAAATCGACCCAGAAAGCATTCACGACCCGCTGTCAAACTCGAACCGCCCGACTCTGCTGCAGACGACGTTGATCCGCTCTACGGGGTTGAGAAGCGGCGTGTTCCTAATGGTCCAAACCCATTGCACAATTGA

Coding sequence (CDS)

ATGAATTGCAAATCAATACCAAACATCACATTTTCCTATTCTTCCTCTTCTAACCATCCCTTGACTACAAGGAAAGAACTGGCTAGCAAGGTTGACTTCACTCCCTTTTTTCCCCACCCGCAGCCAAATCGACCCAGAAAGCATTCACGACCCGCTGTCAAACTCGAACCGCCCGACTCTGCTGCAGACGACGTTGATCCGCTCTACGGGGTTGAGAAGCGGCGTGTTCCTAATGGTCCAAACCCATTGCACAATTGA

Protein sequence

MNCKSIPNITFSYSSSSNHPLTTRKELASKVDFTPFFPHPQPNRPRKHSRPAVKLEPPDSAADDVDPLYGVEKRRVPNGPNPLHN

Homology

[Close]

BLAST of Carg27162 vs. NCBI nr
Match: KGN51553.1 (hypothetical protein Csa_5G577440 [Cucumis sativus])

HSP 1 Score: 111.3 bits (277), Expect = 1.6e-21
Identity = 57/86 (66.28%), Postives = 62/86 (72.09%), Query Frame = 0


Query: 1   MNCKSIPNITFS-YSSSSNHPLTTRKELASKVDFTPFFPHPQPNRPRKHSRPAVKLEPPD 60
           MN +  P ITFS YSSSSNHPL TRK L SKVDFTPFF H  PN+PRKHS P       +
Sbjct: 32  MNHRPTPTITFSYYSSSSNHPLITRKVLTSKVDFTPFFRHRHPNQPRKHSHPTDTNVVDE 91

Query: 61  SAADDVDPLYGVEKRRVPNGPNPLHN 86
            A  D+DP YGVEKRRVP GPNPLH+
Sbjct: 92  PAPSDIDPRYGVEKRRVPTGPNPLHH 117

[Close]

BLAST of Carg27162 vs. NCBI nr
Match: XP_007143789.1 (hypothetical protein PHAVU_007G101800g [Phaseolus vulgaris] >ESW15783.1 hypothetical protein PHAVU_007G101800g [Phaseolus vulgaris])

HSP 1 Score: 76.3 bits (186), Expect = 5.8e-11
Identity = 40/71 (56.34%), Postives = 48/71 (67.61%), Query Frame = 0


Query: 15  SSSNHPLTTRKELASKVDFTPFFPHPQPNRPRKHSRPAVKLEPPDSAADDVDPLYGVEKR 74
           SSS+H L  RK LA+K DF+PFF H       KH +P V +  PD +  D+DP YGVEKR
Sbjct: 45  SSSHHLLVGRKFLATKFDFSPFFKH-----HHKHHQPGVAVH-PDPSDTDIDPRYGVEKR 104

Query: 75  RVPNGPNPLHN 86
           RVP GPNPLH+
Sbjct: 105 RVPTGPNPLHH 109

[Close]

BLAST of Carg27162 vs. NCBI nr
Match: XP_023903065.1 (CLAVATA3/ESR (CLE)-related protein 12 [Quercus suber])

HSP 1 Score: 73.6 bits (179), Expect = 3.7e-10
Identity = 44/91 (48.35%), Postives = 53/91 (58.24%), Query Frame = 0


Query: 1   MNCKSIPNITFSYSSSSNHPLTTRKELASKVDFTPFFPHPQPNRP------RKHSRPAVK 60
           +N K I  IT+S +  SNHPL TRK LAS+ DFTPF  H            ++     VK
Sbjct: 33  INTKQITTITYS-TVLSNHPLITRKVLASRFDFTPFVKHXXXXXXXXXXXMKRSQNMHVK 92

Query: 61  LEPPDSAADDVDPLYGVEKRRVPNGPNPLHN 86
              PD    ++DP YGVEKRRVP GPNPLH+
Sbjct: 93  ---PDPDGSEIDPRYGVEKRRVPTGPNPLHH 119

[Close]

BLAST of Carg27162 vs. NCBI nr
Match: GAV77483.1 (hypothetical protein CFOL_v3_20954 [Cephalotus follicularis])

HSP 1 Score: 72.8 bits (177), Expect = 6.4e-10
Identity = 42/78 (53.85%), Postives = 53/78 (67.95%), Query Frame = 0


Query: 8   NITFSYSSSSNHPLTTRKELASKVDFTPFFPHPQPNRPRKHSRPAVKLEPPDSAADDVDP 67
           NITF+YSS SNH L  RK   SK+DFTP   HPQ  + +K SR  ++++P  S  + +D 
Sbjct: 33  NITFTYSSLSNHHLINRKVFISKLDFTPIQNHPQ-QQHKKRSRD-MQVQPAPS-GNQIDL 92

Query: 68  LYGVEKRRVPNGPNPLHN 86
            YGVEKR VP GPNPLH+
Sbjct: 93  RYGVEKRLVPTGPNPLHH 107

[Close]

BLAST of Carg27162 vs. NCBI nr
Match: XP_021300415.1 (CLAVATA3/ESR (CLE)-related protein 12-like [Herrania umbratica])

HSP 1 Score: 72.4 bits (176), Expect = 8.3e-10
Identity = 43/85 (50.59%), Postives = 56/85 (65.88%), Query Frame = 0


Query: 1   MNCKSIPNITFSYSSSSNHPLTTRKELASKVDFTPFFPHPQPNRPRKHSRPAVKLEPPDS 60
           +N +   +ITF  SS S +PL +RK +ASK DFTPF  H Q  +  KHS P +K +   +
Sbjct: 33  INGRQASSITF--SSLSRNPLISRKVVASKFDFTPFQKHHQQEQQDKHS-PDMKRQ-SQA 92

Query: 61  AADDVDPLYGVEKRRVPNGPNPLHN 86
           A  ++DP YGVEKR VP GPNPLH+
Sbjct: 93  ADTEIDPRYGVEKRLVPTGPNPLHH 113

[Close]

BLAST of Carg27162 vs. TAIR10
Match: AT1G68795.1 (CLAVATA3/ESR-RELATED 12)

HSP 1 Score: 57.4 bits (137), Expect = 5.0e-09
Identity = 31/68 (45.59%), Postives = 43/68 (63.24%), Query Frame = 0


Query: 18  NHPLTTRKELASKVDFTPFFPHPQPNRPRKHSRPAVKLEPPDSAADDVDPLYGVEKRRVP 77
           ++ L +RK L+ + DFTPF  H + N    H R   + +      D++DP YGVEKRRVP
Sbjct: 59  SYRLVSRKVLSDRFDFTPF--HSRDNSRHNH-RSGEQYD-----GDEIDPRYGVEKRRVP 118

Query: 78  NGPNPLHN 86
           +GPNPLH+
Sbjct: 119 SGPNPLHH 118

[Close]

BLAST of Carg27162 vs. TAIR10
Match: AT1G73965.1 (CLAVATA3/ESR-RELATED 13)

HSP 1 Score: 47.0 bits (110), Expect = 6.8e-06
Identity = 29/63 (46.03%), Postives = 37/63 (58.73%), Query Frame = 0


Query: 24  RKELASKV-DFTPFFPHPQPNRPRKHSRPAVKLEPPDSAADDVDPLYGVEKRRVPNGPNP 83
           R+ LA K  DFTPF    + +  RK + PA           ++DP YGVEKR VP+GPNP
Sbjct: 54  RRALAVKTFDFTPFLKDLRRSNHRK-ALPA--------GGSEIDPRYGVEKRLVPSGPNP 107

Query: 84  LHN 86
           LH+
Sbjct: 114 LHH 107

[Close]

BLAST of Carg27162 vs. TAIR10
Match: AT1G26600.1 (CLAVATA3/ESR-RELATED 9)

HSP 1 Score: 44.3 bits (103), Expect = 4.4e-05
Identity = 22/42 (52.38%), Postives = 27/42 (64.29%), Query Frame = 0


Query: 44  RPRKHSRPAVKLEPPDSAADDVDPLYGVEKRRVPNGPNPLHN 86
           R  + SR    L PP     ++DP YGV+KR VP+GPNPLHN
Sbjct: 82  RIHRSSRKQPLLSPP---PPEIDPRYGVDKRLVPSGPNPLHN 120

[Close]

BLAST of Carg27162 vs. TAIR10
Match: AT1G69320.1 (CLAVATA3/ESR-RELATED 10)

HSP 1 Score: 41.6 bits (96), Expect = 2.9e-04
Identity = 20/40 (50.00%), Postives = 23/40 (57.50%), Query Frame = 0


Query: 46  RKHSRPAVKLEPPDSAADDVDPLYGVEKRRVPNGPNPLHN 86
           R H      L  P     ++D  YGVEKR VP+GPNPLHN
Sbjct: 68  RIHRSSRQPLFSPPPPPTEIDQRYGVEKRLVPSGPNPLHN 107

[Close]

BLAST of Carg27162 vs. Swiss-Prot
Match: sp|Q29PU4|CLE12_ARATH (CLAVATA3/ESR (CLE)-related protein 12 OS=Arabidopsis thaliana OX=3702 GN=CLE12 PE=2 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 9.1e-08
Identity = 31/68 (45.59%), Postives = 43/68 (63.24%), Query Frame = 0


Query: 18  NHPLTTRKELASKVDFTPFFPHPQPNRPRKHSRPAVKLEPPDSAADDVDPLYGVEKRRVP 77
           ++ L +RK L+ + DFTPF  H + N    H R   + +      D++DP YGVEKRRVP
Sbjct: 59  SYRLVSRKVLSDRFDFTPF--HSRDNSRHNH-RSGEQYD-----GDEIDPRYGVEKRRVP 118

Query: 78  NGPNPLHN 86
           +GPNPLH+
Sbjct: 119 SGPNPLHH 118

[Close]

BLAST of Carg27162 vs. Swiss-Prot
Match: sp|Q6NMF0|CLE13_ARATH (CLAVATA3/ESR (CLE)-related protein 13 OS=Arabidopsis thaliana OX=3702 GN=CLE13 PE=2 SV=1)

HSP 1 Score: 47.0 bits (110), Expect = 1.2e-04
Identity = 29/63 (46.03%), Postives = 37/63 (58.73%), Query Frame = 0


Query: 24  RKELASKV-DFTPFFPHPQPNRPRKHSRPAVKLEPPDSAADDVDPLYGVEKRRVPNGPNP 83
           R+ LA K  DFTPF    + +  RK + PA           ++DP YGVEKR VP+GPNP
Sbjct: 54  RRALAVKTFDFTPFLKDLRRSNHRK-ALPA--------GGSEIDPRYGVEKRLVPSGPNP 107

Query: 84  LHN 86
           LH+
Sbjct: 114 LHH 107

[Close]

BLAST of Carg27162 vs. Swiss-Prot
Match: sp|Q9FZE4|CLE9_ARATH (CLAVATA3/ESR (CLE)-related protein 9 OS=Arabidopsis thaliana OX=3702 GN=CLE9 PE=2 SV=2)

HSP 1 Score: 44.3 bits (103), Expect = 7.9e-04
Identity = 22/42 (52.38%), Postives = 27/42 (64.29%), Query Frame = 0


Query: 44  RPRKHSRPAVKLEPPDSAADDVDPLYGVEKRRVPNGPNPLHN 86
           R  + SR    L PP     ++DP YGV+KR VP+GPNPLHN
Sbjct: 82  RIHRSSRKQPLLSPP---PPEIDPRYGVDKRLVPSGPNPLHN 120

[Close]

BLAST of Carg27162 vs. TrEMBL
Match: tr|A0A0A0KPQ3|A0A0A0KPQ3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G577440 PE=4 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 1.1e-21
Identity = 57/86 (66.28%), Postives = 62/86 (72.09%), Query Frame = 0


Query: 1   MNCKSIPNITFS-YSSSSNHPLTTRKELASKVDFTPFFPHPQPNRPRKHSRPAVKLEPPD 60
           MN +  P ITFS YSSSSNHPL TRK L SKVDFTPFF H  PN+PRKHS P       +
Sbjct: 32  MNHRPTPTITFSYYSSSSNHPLITRKVLTSKVDFTPFFRHRHPNQPRKHSHPTDTNVVDE 91

Query: 61  SAADDVDPLYGVEKRRVPNGPNPLHN 86
            A  D+DP YGVEKRRVP GPNPLH+
Sbjct: 92  PAPSDIDPRYGVEKRRVPTGPNPLHH 117

[Close]

BLAST of Carg27162 vs. TrEMBL
Match: tr|V7BG00|V7BG00_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris OX=3885 GN=PHAVU_007G101800g PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 3.8e-11
Identity = 40/71 (56.34%), Postives = 48/71 (67.61%), Query Frame = 0


Query: 15  SSSNHPLTTRKELASKVDFTPFFPHPQPNRPRKHSRPAVKLEPPDSAADDVDPLYGVEKR 74
           SSS+H L  RK LA+K DF+PFF H       KH +P V +  PD +  D+DP YGVEKR
Sbjct: 45  SSSHHLLVGRKFLATKFDFSPFFKH-----HHKHHQPGVAVH-PDPSDTDIDPRYGVEKR 104

Query: 75  RVPNGPNPLHN 86
           RVP GPNPLH+
Sbjct: 105 RVPTGPNPLHH 109

[Close]

BLAST of Carg27162 vs. TrEMBL
Match: tr|A0A2N9J7P0|A0A2N9J7P0_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS60537 PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 3.2e-10
Identity = 41/88 (46.59%), Postives = 49/88 (55.68%), Query Frame = 0


Query: 1   MNCKSIPNITFSYSSSSNHPLTTRKELASKVDFTPFFPHPQPNRPRKHSRPAVKLE---P 60
           +N K I  +T+S  S  +HPL TRK LASK DFTPF  H                     
Sbjct: 26  INNKQISTMTYSSLSIHHHPLITRKVLASKFDFTPFVKHXXXXXXXXXXXXXXSQNMHVQ 85

Query: 61  PDSAADDVDPLYGVEKRRVPNGPNPLHN 86
           P+ A  ++DP YGVEKRRVP GPNPLH+
Sbjct: 86  PEPAESEIDPRYGVEKRRVPTGPNPLHH 113

[Close]

BLAST of Carg27162 vs. TrEMBL
Match: tr|A0A1Q3CBK6|A0A1Q3CBK6_CEPFO (Uncharacterized protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_20954 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 4.2e-10
Identity = 42/78 (53.85%), Postives = 53/78 (67.95%), Query Frame = 0


Query: 8   NITFSYSSSSNHPLTTRKELASKVDFTPFFPHPQPNRPRKHSRPAVKLEPPDSAADDVDP 67
           NITF+YSS SNH L  RK   SK+DFTP   HPQ  + +K SR  ++++P  S  + +D 
Sbjct: 33  NITFTYSSLSNHHLINRKVFISKLDFTPIQNHPQ-QQHKKRSRD-MQVQPAPS-GNQIDL 92

Query: 68  LYGVEKRRVPNGPNPLHN 86
            YGVEKR VP GPNPLH+
Sbjct: 93  RYGVEKRLVPTGPNPLHH 107

[Close]

BLAST of Carg27162 vs. TrEMBL
Match: tr|A0A061EC34|A0A061EC34_THECC (Clavata3/esr-related 12, putative OS=Theobroma cacao OX=3641 GN=TCM_011877 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 1.6e-09
Identity = 42/85 (49.41%), Postives = 55/85 (64.71%), Query Frame = 0


Query: 1   MNCKSIPNITFSYSSSSNHPLTTRKELASKVDFTPFFPHPQPNRPRKHSRPAVKLEPPDS 60
           +N +   +ITF  SS S +PL +RK +A K DFTPF  H Q  +  KHS P +K +   +
Sbjct: 33  INGRQASSITF--SSLSRNPLISRKVVAGKFDFTPFQKHHQQEQQDKHS-PDMKRQ-SQA 92

Query: 61  AADDVDPLYGVEKRRVPNGPNPLHN 86
           A  ++DP YGVEKR VP GPNPLH+
Sbjct: 93  ADTEIDPRYGVEKRLVPTGPNPLHH 113

The following BLAST results are available for this feature:

BLAST of Carg27162 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN51553.1	1.6e-21	66.28	hypothetical protein Csa_5G577440 [Cucumis sativus]	[more]
XP_007143789.1	5.8e-11	56.34	hypothetical protein PHAVU_007G101800g [Phaseolus vulgaris] >ESW15783.1 hypothet...	[more]
XP_023903065.1	3.7e-10	48.35	CLAVATA3/ESR (CLE)-related protein 12 [Quercus suber]	[more]
GAV77483.1	6.4e-10	53.85	hypothetical protein CFOL_v3_20954 [Cephalotus follicularis]	[more]
XP_021300415.1	8.3e-10	50.59	CLAVATA3/ESR (CLE)-related protein 12-like [Herrania umbratica]	[more]

BLAST of Carg27162 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G68795.1	5.0e-09	45.59	CLAVATA3/ESR-RELATED 12	[more]
AT1G73965.1	6.8e-06	46.03	CLAVATA3/ESR-RELATED 13	[more]
AT1G26600.1	4.4e-05	52.38	CLAVATA3/ESR-RELATED 9	[more]
AT1G69320.1	2.9e-04	50.00	CLAVATA3/ESR-RELATED 10	[more]

BLAST of Carg27162 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q29PU4\|CLE12_ARATH	9.1e-08	45.59	CLAVATA3/ESR (CLE)-related protein 12 OS=Arabidopsis thaliana OX=3702 GN=CLE12 P...	[more]
sp\|Q6NMF0\|CLE13_ARATH	1.2e-04	46.03	CLAVATA3/ESR (CLE)-related protein 13 OS=Arabidopsis thaliana OX=3702 GN=CLE13 P...	[more]
sp\|Q9FZE4\|CLE9_ARATH	7.9e-04	52.38	CLAVATA3/ESR (CLE)-related protein 9 OS=Arabidopsis thaliana OX=3702 GN=CLE9 PE=...	[more]

BLAST of Carg27162 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KPQ3\|A0A0A0KPQ3_CUCSA	1.1e-21	66.28	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G577440 PE=4 SV=1	[more]
tr\|V7BG00\|V7BG00_PHAVU	3.8e-11	56.34	Uncharacterized protein OS=Phaseolus vulgaris OX=3885 GN=PHAVU_007G101800g PE=4 ...	[more]
tr\|A0A2N9J7P0\|A0A2N9J7P0_FAGSY	3.2e-10	46.59	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS60537 PE=4 SV=1	[more]
tr\|A0A1Q3CBK6\|A0A1Q3CBK6_CEPFO	4.2e-10	53.85	Uncharacterized protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_20954 PE=4...	[more]
tr\|A0A061EC34\|A0A061EC34_THECC	1.6e-09	49.41	Clavata3/esr-related 12, putative OS=Theobroma cacao OX=3641 GN=TCM_011877 PE=4 ...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg27162-RA	Carg27162-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 49..71
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..85
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..24
None	No IPR available	PANTHER	PTHR34359:SF1	CLAVATA3/ESR CLE -RELATED PROTEIN 12	coord: 2..84
None	No IPR available	PANTHER	PTHR34359	FAMILY NOT NAMED	coord: 2..84

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg27162	CmaCh04G019960	Cucurbita maxima (Rimu)	carcmaB0703
Carg27162	CmoCh04G021180	Cucurbita moschata (Rifu)	carcmoB0683
Carg27162	Cp4.1LG01g17760	Cucurbita pepo (Zucchini)	carcpeB0708

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:

None