CmaCh04G019960 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh04G019960
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionClavata3/esr-related 12 family protein
LocationCma_Chr04 : 12001061 .. 12001318 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAATTGCAAATCAATATCAAACATCACATTTTCCTATTCTTCCTCCTCCAACCATCCCTTCACTACAAGAAAAGTACTGGCTAGCAAGGTTGACTTCACTCCCTTTTTTCCCCGCCCGAAGCCAAATAGACCCAGAAAGCATTCACGACCTGCTGTCAAACTCGAACCGCCCGACTCTGCTGCAGACGACGTTGATCCGCTCTACGGGGTTGAGAAGCGGCGTGTTCCTAATGGTCCAAACCCATTGCACAATTGA

mRNA sequence

ATGAATTGCAAATCAATATCAAACATCACATTTTCCTATTCTTCCTCCTCCAACCATCCCTTCACTACAAGAAAAGTACTGGCTAGCAAGGTTGACTTCACTCCCTTTTTTCCCCGCCCGAAGCCAAATAGACCCAGAAAGCATTCACGACCTGCTGTCAAACTCGAACCGCCCGACTCTGCTGCAGACGACGTTGATCCGCTCTACGGGGTTGAGAAGCGGCGTGTTCCTAATGGTCCAAACCCATTGCACAATTGA

Coding sequence (CDS)

ATGAATTGCAAATCAATATCAAACATCACATTTTCCTATTCTTCCTCCTCCAACCATCCCTTCACTACAAGAAAAGTACTGGCTAGCAAGGTTGACTTCACTCCCTTTTTTCCCCGCCCGAAGCCAAATAGACCCAGAAAGCATTCACGACCTGCTGTCAAACTCGAACCGCCCGACTCTGCTGCAGACGACGTTGATCCGCTCTACGGGGTTGAGAAGCGGCGTGTTCCTAATGGTCCAAACCCATTGCACAATTGA

Protein sequence

MNCKSISNITFSYSSSSNHPFTTRKVLASKVDFTPFFPRPKPNRPRKHSRPAVKLEPPDSAADDVDPLYGVEKRRVPNGPNPLHN
Homology
[Close]
BLAST of CmaCh04G019960 vs. Swiss-Prot
Match: CLE12_ARATH (CLAVATA3/ESR (CLE)-related protein 12 OS=Arabidopsis thaliana GN=CLE12 PE=2 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 4.0e-08
Identity = 30/68 (44.12%), Postives = 43/68 (63.24%), Query Frame = 1 

Query: 18  NHPFTTRKVLASKVDFTPFFPRPKPNRPRKHSRPAVKLEPPDSAADDVDPLYGVEKRRVP 77
           ++   +RKVL+ + DFTPF  R   +  R + R   + +      D++DP YGVEKRRVP
Sbjct: 59  SYRLVSRKVLSDRFDFTPFHSR---DNSRHNHRSGEQYD-----GDEIDPRYGVEKRRVP 118

Query: 78  NGPNPLHN 86
           +GPNPLH+
Sbjct: 119 SGPNPLHH 118

[Close]
BLAST of CmaCh04G019960 vs. TrEMBL
Match: A0A0A0KPQ3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G577440 PE=4 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 9.3e-20
Identity = 55/86 (63.95%), Postives = 60/86 (69.77%), Query Frame = 1 

Query: 1   MNCKSISNITFSY-SSSSNHPFTTRKVLASKVDFTPFFPRPKPNRPRKHSRPAVKLEPPD 60
           MN +    ITFSY SSSSNHP  TRKVL SKVDFTPFF    PN+PRKHS P       +
Sbjct: 32  MNHRPTPTITFSYYSSSSNHPLITRKVLTSKVDFTPFFRHRHPNQPRKHSHPTDTNVVDE 91

Query: 61  SAADDVDPLYGVEKRRVPNGPNPLHN 86
            A  D+DP YGVEKRRVP GPNPLH+
Sbjct: 92  PAPSDIDPRYGVEKRRVPTGPNPLHH 117

[Close]
BLAST of CmaCh04G019960 vs. TrEMBL
Match: V7BG00_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_007G101800g PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 2.3e-10
Identity = 38/71 (53.52%), Postives = 46/71 (64.79%), Query Frame = 1 

Query: 15  SSSNHPFTTRKVLASKVDFTPFFPRPKPNRPRKHSRPAVKLEPPDSAADDVDPLYGVEKR 74
           SSS+H    RK LA+K DF+PFF         KH +P V + P D +  D+DP YGVEKR
Sbjct: 45  SSSHHLLVGRKFLATKFDFSPFF-----KHHHKHHQPGVAVHP-DPSDTDIDPRYGVEKR 104

Query: 75  RVPNGPNPLHN 86
           RVP GPNPLH+
Sbjct: 105 RVPTGPNPLHH 109

[Close]
BLAST of CmaCh04G019960 vs. TrEMBL
Match: B9HIY0_POPTR (Clavata3/esr-related 12 family protein OS=Populus trichocarpa GN=POPTR_0008s11450g PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 8.7e-10
Identity = 44/85 (51.76%), Postives = 53/85 (62.35%), Query Frame = 1 

Query: 2   NCKSISNITFSYSSSSNHPFTTRKVLASKVDFTPFFPRPKPNRPRKHSRPAVKLEPPDSA 61
           N   I+NI  S SS S+HPF  RKVL SK DFTPF    + +R ++H  P    E    A
Sbjct: 35  NKDQINNI--SSSSISHHPFHNRKVLVSKFDFTPF----QKHRQQQHENPLPDEEVHKKA 94

Query: 62  A-DDVDPLYGVEKRRVPNGPNPLHN 86
           A  ++DP YGVEKR VP GPNPLH+
Sbjct: 95  ARSEIDPRYGVEKRLVPTGPNPLHH 113

[Close]
BLAST of CmaCh04G019960 vs. TrEMBL
Match: A0A061EC34_THECC (Clavata3/esr-related 12, putative OS=Theobroma cacao GN=TCM_011877 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 7.4e-09
Identity = 41/85 (48.24%), Postives = 55/85 (64.71%), Query Frame = 1 

Query: 1   MNCKSISNITFSYSSSSNHPFTTRKVLASKVDFTPFFPRPKPNRPRKHSRPAVKLEPPDS 60
           +N +  S+ITFS  S S +P  +RKV+A K DFTPF    +  +  KHS P +K +   +
Sbjct: 33  INGRQASSITFS--SLSRNPLISRKVVAGKFDFTPFQKHHQQEQQDKHS-PDMKRQS-QA 92

Query: 61  AADDVDPLYGVEKRRVPNGPNPLHN 86
           A  ++DP YGVEKR VP GPNPLH+
Sbjct: 93  ADTEIDPRYGVEKRLVPTGPNPLHH 113

[Close]
BLAST of CmaCh04G019960 vs. TrEMBL
Match: A0A0B2RZK0_GLYSO (CLAVATA3/ESR (CLE)-related protein 12 (Fragment) OS=Glycine soja GN=glysoja_016942 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 1.3e-08
Identity = 40/87 (45.98%), Postives = 53/87 (60.92%), Query Frame = 1 

Query: 1   MNCKSISNITFSYSSSSNHPFTTRKVLASKVDFTPFFPRPKPNRPRKHSRP--AVKLEPP 60
           +N K I+  +      S+H F +RK LA+K DF+PFF         KH +P  AV  +P 
Sbjct: 37  INKKQITQTSHYSLLPSHHHFMSRKFLATKFDFSPFF-----RHHHKHHQPGGAVHHDPS 96

Query: 61  DSAADDVDPLYGVEKRRVPNGPNPLHN 86
           D+   ++DP YGVEKRRVP GPNPLH+
Sbjct: 97  DT---EIDPRYGVEKRRVPTGPNPLHH 115

[Close]
BLAST of CmaCh04G019960 vs. TAIR10
Match: AT1G68795.1 (AT1G68795.1 CLAVATA3/ESR-RELATED 12)

HSP 1 Score: 58.5 bits (140), Expect = 2.3e-09
Identity = 30/68 (44.12%), Postives = 43/68 (63.24%), Query Frame = 1 

Query: 18  NHPFTTRKVLASKVDFTPFFPRPKPNRPRKHSRPAVKLEPPDSAADDVDPLYGVEKRRVP 77
           ++   +RKVL+ + DFTPF  R   +  R + R   + +      D++DP YGVEKRRVP
Sbjct: 59  SYRLVSRKVLSDRFDFTPFHSR---DNSRHNHRSGEQYD-----GDEIDPRYGVEKRRVP 118

Query: 78  NGPNPLHN 86
           +GPNPLH+
Sbjct: 119 SGPNPLHH 118

[Close]
BLAST of CmaCh04G019960 vs. TAIR10
Match: AT1G73965.1 (AT1G73965.1 CLAVATA3/ESR-RELATED 13)

HSP 1 Score: 46.6 bits (109), Expect = 8.9e-06
Identity = 29/63 (46.03%), Postives = 37/63 (58.73%), Query Frame = 1 

Query: 24  RKVLASKV-DFTPFFPRPKPNRPRKHSRPAVKLEPPDSAADDVDPLYGVEKRRVPNGPNP 83
           R+ LA K  DFTPF    + +  RK + PA           ++DP YGVEKR VP+GPNP
Sbjct: 54  RRALAVKTFDFTPFLKDLRRSNHRK-ALPA--------GGSEIDPRYGVEKRLVPSGPNP 107

Query: 84  LHN 86
           LH+
Sbjct: 114 LHH 107

[Close]
BLAST of CmaCh04G019960 vs. NCBI nr
Match: gi|700196376|gb|KGN51553.1| (hypothetical protein Csa_5G577440 [Cucumis sativus])

HSP 1 Score: 104.0 bits (258), Expect = 1.3e-19
Identity = 55/86 (63.95%), Postives = 60/86 (69.77%), Query Frame = 1 

Query: 1   MNCKSISNITFSY-SSSSNHPFTTRKVLASKVDFTPFFPRPKPNRPRKHSRPAVKLEPPD 60
           MN +    ITFSY SSSSNHP  TRKVL SKVDFTPFF    PN+PRKHS P       +
Sbjct: 32  MNHRPTPTITFSYYSSSSNHPLITRKVLTSKVDFTPFFRHRHPNQPRKHSHPTDTNVVDE 91

Query: 61  SAADDVDPLYGVEKRRVPNGPNPLHN 86
            A  D+DP YGVEKRRVP GPNPLH+
Sbjct: 92  PAPSDIDPRYGVEKRRVPTGPNPLHH 117

[Close]
BLAST of CmaCh04G019960 vs. NCBI nr
Match: gi|593686236|ref|XP_007143789.1| (hypothetical protein PHAVU_007G101800g [Phaseolus vulgaris])

HSP 1 Score: 72.8 bits (177), Expect = 3.3e-10
Identity = 38/71 (53.52%), Postives = 46/71 (64.79%), Query Frame = 1 

Query: 15  SSSNHPFTTRKVLASKVDFTPFFPRPKPNRPRKHSRPAVKLEPPDSAADDVDPLYGVEKR 74
           SSS+H    RK LA+K DF+PFF         KH +P V + P D +  D+DP YGVEKR
Sbjct: 45  SSSHHLLVGRKFLATKFDFSPFF-----KHHHKHHQPGVAVHP-DPSDTDIDPRYGVEKR 104

Query: 75  RVPNGPNPLHN 86
           RVP GPNPLH+
Sbjct: 105 RVPTGPNPLHH 109

[Close]
BLAST of CmaCh04G019960 vs. NCBI nr
Match: gi|224101673|ref|XP_002312377.1| (clavata3/esr-related 12 family protein [Populus trichocarpa])

HSP 1 Score: 70.9 bits (172), Expect = 1.2e-09
Identity = 44/85 (51.76%), Postives = 53/85 (62.35%), Query Frame = 1 

Query: 2   NCKSISNITFSYSSSSNHPFTTRKVLASKVDFTPFFPRPKPNRPRKHSRPAVKLEPPDSA 61
           N   I+NI  S SS S+HPF  RKVL SK DFTPF    + +R ++H  P    E    A
Sbjct: 35  NKDQINNI--SSSSISHHPFHNRKVLVSKFDFTPF----QKHRQQQHENPLPDEEVHKKA 94

Query: 62  A-DDVDPLYGVEKRRVPNGPNPLHN 86
           A  ++DP YGVEKR VP GPNPLH+
Sbjct: 95  ARSEIDPRYGVEKRLVPTGPNPLHH 113

[Close]
BLAST of CmaCh04G019960 vs. NCBI nr
Match: gi|1000981895|ref|XP_015583984.1| (PREDICTED: CLAVATA3/ESR (CLE)-related protein 12 [Ricinus communis])

HSP 1 Score: 69.3 bits (168), Expect = 3.6e-09
Identity = 36/72 (50.00%), Postives = 48/72 (66.67%), Query Frame = 1 

Query: 15  SSSNHP-FTTRKVLASKVDFTPFFPRPKPNRPRKHSRPAVKLEPPDSAADDVDPLYGVEK 74
           SSS+HP F++RK+LASK DF PF  +   +RP  H     +++P   A  ++DP YG EK
Sbjct: 48  SSSHHPSFSSRKMLASKFDFAPFLNKHHRHRPHYH-----RMKPESPAGAEIDPRYGAEK 107

Query: 75  RRVPNGPNPLHN 86
           R VP GPNPLH+
Sbjct: 108 RLVPTGPNPLHH 114

[Close]
BLAST of CmaCh04G019960 vs. NCBI nr
Match: gi|697184081|ref|XP_009601067.1| (PREDICTED: CLAVATA3/ESR (CLE)-related protein 13-like [Nicotiana tomentosiformis])

HSP 1 Score: 69.3 bits (168), Expect = 3.6e-09
Identity = 43/79 (54.43%), Postives = 51/79 (64.56%), Query Frame = 1 

Query: 10  TFSYSSSSNHP-FTTRKVL-ASKVDFTPFFP-RPKPNRPRKHSRPAVKLEPPDSAADDVD 69
           + +YS S+NHP FT RK L AS  DFTPF   R   +  RKHS P    E P+ A  ++D
Sbjct: 34  SIAYSPSNNHPLFTQRKALIASNFDFTPFVKNRHHHHHHRKHS-PVDVPERPEPAGSEID 93

Query: 70  PLYGVEKRRVPNGPNPLHN 86
           P YGVEKR VP GPNPLH+
Sbjct: 94  PRYGVEKRLVPTGPNPLHH 111

The following BLAST results are available for this feature:
BLAST of CmaCh04G019960 vs. Swiss-Prot
Match NameE-valueIdentityDescription
CLE12_ARATH4.0e-0844.12CLAVATA3/ESR (CLE)-related protein 12 OS=Arabidopsis thaliana GN=CLE12 PE=2 SV=1[more]
BLAST of CmaCh04G019960 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KPQ3_CUCSA9.3e-2063.95Uncharacterized protein OS=Cucumis sativus GN=Csa_5G577440 PE=4 SV=1[more]
V7BG00_PHAVU2.3e-1053.52Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_007G101800g PE=4 SV=1[more]
B9HIY0_POPTR8.7e-1051.76Clavata3/esr-related 12 family protein OS=Populus trichocarpa GN=POPTR_0008s1145... [more]
A0A061EC34_THECC7.4e-0948.24Clavata3/esr-related 12, putative OS=Theobroma cacao GN=TCM_011877 PE=4 SV=1[more]
A0A0B2RZK0_GLYSO1.3e-0845.98CLAVATA3/ESR (CLE)-related protein 12 (Fragment) OS=Glycine soja GN=glysoja_0169... [more]
BLAST of CmaCh04G019960 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G68795.12.3e-0944.12 CLAVATA3/ESR-RELATED 12[more]
AT1G73965.18.9e-0646.03 CLAVATA3/ESR-RELATED 13[more]
BLAST of CmaCh04G019960 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700196376|gb|KGN51553.1|1.3e-1963.95hypothetical protein Csa_5G577440 [Cucumis sativus][more]
gi|593686236|ref|XP_007143789.1|3.3e-1053.52hypothetical protein PHAVU_007G101800g [Phaseolus vulgaris][more]
gi|224101673|ref|XP_002312377.1|1.2e-0951.76clavata3/esr-related 12 family protein [Populus trichocarpa][more]
gi|1000981895|ref|XP_015583984.1|3.6e-0950.00PREDICTED: CLAVATA3/ESR (CLE)-related protein 12 [Ricinus communis][more]
gi|697184081|ref|XP_009601067.1|3.6e-0954.43PREDICTED: CLAVATA3/ESR (CLE)-related protein 13-like [Nicotiana tomentosiformis... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh04G019960.1CmaCh04G019960.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR34359FAMILY NOT NAMEDcoord: 12..85
score: 1.4
NoneNo IPR availablePANTHERPTHR34359:SF1CLAVATA3/ESR (CLE)-RELATED PROTEIN 11-RELATEDcoord: 12..85
score: 1.4

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmaCh04G019960CmoCh04G021180Cucurbita moschata (Rifu)cmacmoB729
CmaCh04G019960Carg27162Silver-seed gourdcarcmaB0703
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh04G019960Watermelon (97103) v2cmawmbB768
CmaCh04G019960Cucurbita maxima (Rimu)cmacmaB018
CmaCh04G019960Cucurbita moschata (Rifu)cmacmoB679
CmaCh04G019960Cucurbita pepo (Zucchini)cmacpeB721
CmaCh04G019960Cucumber (Gy14) v2cgybcmaB657
CmaCh04G019960Melon (DHL92) v3.6.1cmamedB747