Lsi09G006080 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi09G006080
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Clavata3/esr-related 12, putative
Location	chr09 : 6606696 .. 6607527 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATCACAAACCAACACCAATCATCACATTTTCCTATTCTTCTTCTTCCTCCTCCAACCATCCATTGATAACAAGGAAGGTACTAACCAGCAAGGTAGACTTCACCCCCTTTTTCCCACAGCGCCGGCCGAATCGACCACCGAAGCATTCTCGCCCCACCGACACCAACGACCAACCATCCCCCGCCGACATCGATCCTCGGTACGGCGTTGAGAAGCGACGAGTCCCTACCGGTCCAAATCCATTGCACCATTGATGTATATGAATGGAAAAAAGAAGAAAAGGTTCATAGTTAGTTAAAGTTTGAAATCCAATTATTTCTTTCATAAATGATAACATATTCATGTTGTTTGATGATATTGATAGCGTGAAAAATATTTGGTTTGTTTATATTGATAAGTAGAAATTCTATTTTACCTTTTAATGTGGTTTATTTTTAATGGTTGGATCAAATAAACCACATAAAAAAGTAAGTAGAAACTTTCTACTTATTGGTAAGTAAGCAAGTTTTGTTGATGATGACACTGTGAATTTGAGTTTGTACATTAATTTCGGGCAATGATATTAAAAAAATAGAGTGAATTTTTTTTAAGTACAGTAAAAGTCAGGATTCAAACCACCGACTTGTATAAAAGAGTGAATTTGATTGTTATTCTTTTTTATGATATATGTAATTATTAATTATATTTATGAGTAGTTATGATTGGCAATTAAAGGAGATAAGGAGTAGCTGAGAAGGCAAGGTAAATTGCACATTTCTTTGAAGATTAACAATAAAAAAAGCAAATTTTGCAGTGCAAGTGATGCGTTTGGTACCCACCGGCCCTTAG

mRNA sequence

ATGAATCACAAACCAACACCAATCATCACATTTTCCTATTCTTCTTCTTCCTCCTCCAACCATCCATTGATAACAAGGAAGGTACTAACCAGCAAGGTAGACTTCACCCCCTTTTTCCCACAGCGCCGGCCGAATCGACCACCGAAGCATTCTCGCCCCACCGACACCAACGACCAACCATCCCCCGCCGACATCGATCCTCGGTACGGCGTTGAGAAGCGACGAGTCCCTACCGTGCAAGTGATGCGTTTGGTACCCACCGGCCCTTAG

Coding sequence (CDS)

ATGAATCACAAACCAACACCAATCATCACATTTTCCTATTCTTCTTCTTCCTCCTCCAACCATCCATTGATAACAAGGAAGGTACTAACCAGCAAGGTAGACTTCACCCCCTTTTTCCCACAGCGCCGGCCGAATCGACCACCGAAGCATTCTCGCCCCACCGACACCAACGACCAACCATCCCCCGCCGACATCGATCCTCGGTACGGCGTTGAGAAGCGACGAGTCCCTACCGTGCAAGTGATGCGTTTGGTACCCACCGGCCCTTAG

Protein sequence

MNHKPTPIITFSYSSSSSSNHPLITRKVLTSKVDFTPFFPQRRPNRPPKHSRPTDTNDQPSPADIDPRYGVEKRRVPTVQVMRLVPTGP

Homology

[Close]

BLAST of Lsi09G006080 vs. TrEMBL
Match: A0A0A0KPQ3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G577440 PE=4 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 1.8e-26
Identity = 65/80 (81.25%), Postives = 70/80 (87.50%), Query Frame = 1


Query: 1   MNHKPTPIITFSYSSSSSSNHPLITRKVLTSKVDFTPFFPQRRPNRPPKHSRPTDTN--D 60
           MNH+PTP ITFSY SS SSNHPLITRKVLTSKVDFTPFF  R PN+P KHS PTDTN  D
Sbjct: 32  MNHRPTPTITFSYYSS-SSNHPLITRKVLTSKVDFTPFFRHRHPNQPRKHSHPTDTNVVD 91

Query: 61  QPSPADIDPRYGVEKRRVPT 79
           +P+P+DIDPRYGVEKRRVPT
Sbjct: 92  EPAPSDIDPRYGVEKRRVPT 110

[Close]

BLAST of Lsi09G006080 vs. TrEMBL
Match: A5B735_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_020013 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 2.9e-08
Identity = 41/71 (57.75%), Postives = 47/71 (66.20%), Query Frame = 1


Query: 13  YSSSSSSNHPLITRKVLTSKVDFTPFFPQR---RPNRPPKHSRPTDTNDQPSPA--DIDP 72
           YSSSS S  P I+RKVL+SK DFTPF  QR   R +   +H R  +   QP PA  +IDP
Sbjct: 37  YSSSSVSRQPPISRKVLSSKFDFTPFQKQRHRHRHHHSHRHGRSPNMQVQPEPAGTEIDP 96

Query: 73  RYGVEKRRVPT 79
           RYGVEKR VPT
Sbjct: 97  RYGVEKRLVPT 107

[Close]

BLAST of Lsi09G006080 vs. TrEMBL
Match: V7BG00_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_007G101800g PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 1.2e-06
Identity = 35/65 (53.85%), Postives = 41/65 (63.08%), Query Frame = 1


Query: 15  SSSSSNHPLITRKVLTSKVDFTPFFPQRRPNRPPKHSRP-TDTNDQPSPADIDPRYGVEK 74
           S SSS+H L+ RK L +K DF+PFF         KH +P    +  PS  DIDPRYGVEK
Sbjct: 43  SISSSHHLLVGRKFLATKFDFSPFFKHHH-----KHHQPGVAVHPDPSDTDIDPRYGVEK 102

Query: 75  RRVPT 79
           RRVPT
Sbjct: 103 RRVPT 102

[Close]

BLAST of Lsi09G006080 vs. TrEMBL
Match: V4TMC3_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10033717mg PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 1.6e-06
Identity = 36/68 (52.94%), Postives = 43/68 (63.24%), Query Frame = 1


Query: 17  SSSNHPLITRKVLTSKVDFTPFFPQRRPNRPPKHSRPTDTNDQPSP------ADIDPRYG 76
           S S +PLI RKVL SK DFTPF      + P +  +P D + QP+P      A+IDPRYG
Sbjct: 51  SLSKYPLINRKVLASKFDFTPFQKHHEKSSPSQELQPKD-HHQPAPAADHGSAEIDPRYG 110

Query: 77  VEKRRVPT 79
           VEKR VPT
Sbjct: 111 VEKRLVPT 117

[Close]

BLAST of Lsi09G006080 vs. TrEMBL
Match: A0A061EC34_THECC (Clavata3/esr-related 12, putative OS=Theobroma cacao GN=TCM_011877 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 2.1e-06
Identity = 36/78 (46.15%), Postives = 45/78 (57.69%), Query Frame = 1


Query: 1   MNHKPTPIITFSYSSSSSSNHPLITRKVLTSKVDFTPFFPQRRPNRPPKHSRPTDTNDQP 60
           +N +    ITFS    S S +PLI+RKV+  K DFTPF    +  +  KHS       Q 
Sbjct: 33  INGRQASSITFS----SLSRNPLISRKVVAGKFDFTPFQKHHQQEQQDKHSPDMKRQSQA 92

Query: 61  SPADIDPRYGVEKRRVPT 79
           +  +IDPRYGVEKR VPT
Sbjct: 93  ADTEIDPRYGVEKRLVPT 106

[Close]

BLAST of Lsi09G006080 vs. NCBI nr
Match: gi|700196376|gb|KGN51553.1| (hypothetical protein Csa_5G577440 [Cucumis sativus])

HSP 1 Score: 126.3 bits (316), Expect = 2.6e-26
Identity = 65/80 (81.25%), Postives = 70/80 (87.50%), Query Frame = 1


Query: 1   MNHKPTPIITFSYSSSSSSNHPLITRKVLTSKVDFTPFFPQRRPNRPPKHSRPTDTN--D 60
           MNH+PTP ITFSY SS SSNHPLITRKVLTSKVDFTPFF  R PN+P KHS PTDTN  D
Sbjct: 32  MNHRPTPTITFSYYSS-SSNHPLITRKVLTSKVDFTPFFRHRHPNQPRKHSHPTDTNVVD 91

Query: 61  QPSPADIDPRYGVEKRRVPT 79
           +P+P+DIDPRYGVEKRRVPT
Sbjct: 92  EPAPSDIDPRYGVEKRRVPT 110

[Close]

BLAST of Lsi09G006080 vs. NCBI nr
Match: gi|731370673|ref|XP_010648002.1| (PREDICTED: CLAVATA3/ESR (CLE)-related protein 12 [Vitis vinifera])

HSP 1 Score: 65.9 bits (159), Expect = 4.2e-08
Identity = 41/71 (57.75%), Postives = 47/71 (66.20%), Query Frame = 1


Query: 13  YSSSSSSNHPLITRKVLTSKVDFTPFFPQR---RPNRPPKHSRPTDTNDQPSPA--DIDP 72
           YSSSS S  P I+RKVL+SK DFTPF  QR   R +   +H R  +   QP PA  +IDP
Sbjct: 37  YSSSSVSRQPPISRKVLSSKFDFTPFQKQRHRHRHHHSHRHGRSPNMQVQPEPAGTEIDP 96

Query: 73  RYGVEKRRVPT 79
           RYGVEKR VPT
Sbjct: 97  RYGVEKRLVPT 107

[Close]

BLAST of Lsi09G006080 vs. NCBI nr
Match: gi|593686236|ref|XP_007143789.1| (hypothetical protein PHAVU_007G101800g [Phaseolus vulgaris])

HSP 1 Score: 60.5 bits (145), Expect = 1.8e-06
Identity = 35/65 (53.85%), Postives = 41/65 (63.08%), Query Frame = 1


Query: 15  SSSSSNHPLITRKVLTSKVDFTPFFPQRRPNRPPKHSRP-TDTNDQPSPADIDPRYGVEK 74
           S SSS+H L+ RK L +K DF+PFF         KH +P    +  PS  DIDPRYGVEK
Sbjct: 43  SISSSHHLLVGRKFLATKFDFSPFFKHHH-----KHHQPGVAVHPDPSDTDIDPRYGVEK 102

Query: 75  RRVPT 79
           RRVPT
Sbjct: 103 RRVPT 102

[Close]

BLAST of Lsi09G006080 vs. NCBI nr
Match: gi|567890451|ref|XP_006437746.1| (hypothetical protein CICLE_v10033717mg [Citrus clementina])

HSP 1 Score: 60.1 bits (144), Expect = 2.3e-06
Identity = 36/68 (52.94%), Postives = 43/68 (63.24%), Query Frame = 1


Query: 17  SSSNHPLITRKVLTSKVDFTPFFPQRRPNRPPKHSRPTDTNDQPSP------ADIDPRYG 76
           S S +PLI RKVL SK DFTPF      + P +  +P D + QP+P      A+IDPRYG
Sbjct: 51  SLSKYPLINRKVLASKFDFTPFQKHHEKSSPSQELQPKD-HHQPAPAADHGSAEIDPRYG 110

Query: 77  VEKRRVPT 79
           VEKR VPT
Sbjct: 111 VEKRLVPT 117

[Close]

BLAST of Lsi09G006080 vs. NCBI nr
Match: gi|590701118|ref|XP_007046321.1| (Clavata3/esr-related 12, putative [Theobroma cacao])

HSP 1 Score: 59.7 bits (143), Expect = 3.0e-06
Identity = 36/78 (46.15%), Postives = 45/78 (57.69%), Query Frame = 1


Query: 1   MNHKPTPIITFSYSSSSSSNHPLITRKVLTSKVDFTPFFPQRRPNRPPKHSRPTDTNDQP 60
           +N +    ITFS    S S +PLI+RKV+  K DFTPF    +  +  KHS       Q 
Sbjct: 33  INGRQASSITFS----SLSRNPLISRKVVAGKFDFTPFQKHHQQEQQDKHSPDMKRQSQA 92

Query: 61  SPADIDPRYGVEKRRVPT 79
           +  +IDPRYGVEKR VPT
Sbjct: 93  ADTEIDPRYGVEKRLVPT 106

The following BLAST results are available for this feature:

BLAST of Lsi09G006080 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Lsi09G006080 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KPQ3_CUCSA	1.8e-26	81.25	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G577440 PE=4 SV=1	[more]
A5B735_VITVI	2.9e-08	57.75	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_020013 PE=4 SV=1	[more]
V7BG00_PHAVU	1.2e-06	53.85	Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_007G101800g PE=4 SV=1	[more]
V4TMC3_9ROSI	1.6e-06	52.94	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10033717mg PE=4 SV=1	[more]
A0A061EC34_THECC	2.1e-06	46.15	Clavata3/esr-related 12, putative OS=Theobroma cacao GN=TCM_011877 PE=4 SV=1	[more]

BLAST of Lsi09G006080 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Lsi09G006080 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700196376\|gb\|KGN51553.1\|	2.6e-26	81.25	hypothetical protein Csa_5G577440 [Cucumis sativus]	[more]
gi\|731370673\|ref\|XP_010648002.1\|	4.2e-08	57.75	PREDICTED: CLAVATA3/ESR (CLE)-related protein 12 [Vitis vinifera]	[more]
gi\|593686236\|ref\|XP_007143789.1\|	1.8e-06	53.85	hypothetical protein PHAVU_007G101800g [Phaseolus vulgaris]	[more]
gi\|567890451\|ref\|XP_006437746.1\|	2.3e-06	52.94	hypothetical protein CICLE_v10033717mg [Citrus clementina]	[more]
gi\|590701118\|ref\|XP_007046321.1\|	3.0e-06	46.15	Clavata3/esr-related 12, putative [Theobroma cacao]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi09G006080.1	Lsi09G006080.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34359	FAMILY NOT NAMED	coord: 14..78 score: 8.9
None	No IPR available	PANTHER	PTHR34359:SF1	CLAVATA3/ESR (CLE)-RELATED PROTEIN 11-RELATED	coord: 14..78 score: 8.9

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi09G006080	Csa5G577440	Cucumber (Chinese Long) v2	culsiB329
Lsi09G006080	CSPI05G20160	Wild cucumber (PI 183967)	cpilsiB329
Lsi09G006080	Cucsa.280870	Cucumber (Gy14) v1	cgylsiB452
Lsi09G006080	CmoCh15G014950	Cucurbita moschata (Rifu)	cmolsiB248
Lsi09G006080	CmoCh04G021180	Cucurbita moschata (Rifu)	cmolsiB613
Lsi09G006080	Cla002321	Watermelon (97103) v1	lsiwmB030
Lsi09G006080	MELO3C005357	Melon (DHL92) v3.5.1	lsimeB013
Lsi09G006080	ClCG01G005730	Watermelon (Charleston Gray)	lsiwcgB008
Lsi09G006080	MELO3C005357.2	Melon (DHL92) v3.6.1	lsimedB013
Lsi09G006080	Cla97C01G006000	Watermelon (97103) v2	lsiwmbB007
Lsi09G006080	Bhi12G000711	Wax gourd	lsiwgoB006

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi09G006080	Cucurbita maxima (Rimu)	cmalsiB261
Lsi09G006080	Cucurbita pepo (Zucchini)	cpelsiB133
Lsi09G006080	Cucumber (Gy14) v2	cgyblsiB301
Lsi09G006080	Melon (DHL92) v3.6.1	lsimedB017
Lsi09G006080	Silver-seed gourd	carlsiB676
Lsi09G006080	Cucumber (Chinese Long) v3	cuclsiB352
Lsi09G006080	Cucumber (Chinese Long) v3	cuclsiB357
Lsi09G006080	Watermelon (97103) v2	lsiwmbB017
Lsi09G006080	Wax gourd	lsiwgoB055