CSPI05G20160 (gene) Wild cucumber (PI 183967)
The following sequences are available for this feature:
Legend: five_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.TTTCTCCACTGGAAAAAAGAAAAAAAAAACCATCTTTGAACTTTAATTTTTGATTGGCGTTTTAGTGCTCCGATCCATGCTTCCCTTTCAAATCTTTCCTCTTCTCTCTCCCCTTCTTTCTCCATGACATTGAAAATTTCCCACTTCCTTTTTACCATGCTTTGGATCTCTCTTCTTCTCTTATTACTTCATGAACTAAATATCTTCAAGGCCAAAATGAATCACAAACCAACACCAACCATCACATTTTCCTATTATTCTTCCTCCAACCATCCCTTGATAACAAGGAAAGTACTAACCAGCAAGGTAGACTTCACCCCCTTTTTCCGCCACCGCCACCCGAATCAACCACGAAAGCATTCGCACCCCACCGATACCAACGTCGTTGACGAACCAGCCCCCAGCGACATTGATCCTCGCTACGGCGTCGAGAAGCGACGAGTCCCGACCGGTCCAAACCCATTGCACCACTGATGCATACGAAAGGAAAAAGAAGAAAAGGTCCATAG ATGACATTGAAAATTTCCCACTTCCTTTTTACCATGCTTTGGATCTCTCTTCTTCTCTTATTACTTCATGAACTAAATATCTTCAAGGCCAAAATGAATCACAAACCAACACCAACCATCACATTTTCCTATTATTCTTCCTCCAACCATCCCTTGATAACAAGGAAAGTACTAACCAGCAAGGTAGACTTCACCCCCTTTTTCCGCCACCGCCACCCGAATCAACCACGAAAGCATTCGCACCCCACCGATACCAACGTCGTTGACGAACCAGCCCCCAGCGACATTGATCCTCGCTACGGCGTCGAGAAGCGACGAGTCCCGACCGGTCCAAACCCATTGCACCACTGA ATGACATTGAAAATTTCCCACTTCCTTTTTACCATGCTTTGGATCTCTCTTCTTCTCTTATTACTTCATGAACTAAATATCTTCAAGGCCAAAATGAATCACAAACCAACACCAACCATCACATTTTCCTATTATTCTTCCTCCAACCATCCCTTGATAACAAGGAAAGTACTAACCAGCAAGGTAGACTTCACCCCCTTTTTCCGCCACCGCCACCCGAATCAACCACGAAAGCATTCGCACCCCACCGATACCAACGTCGTTGACGAACCAGCCCCCAGCGACATTGATCCTCGCTACGGCGTCGAGAAGCGACGAGTCCCGACCGGTCCAAACCCATTGCACCACTGA
BLAST of CSPI05G20160 vs. Swiss-Prot
Match: CLE12_ARATH (CLAVATA3/ESR (CLE)-related protein 12 OS=Arabidopsis thaliana GN=CLE12 PE=2 SV=1) HSP 1 Score: 82.8 bits (203), Expect = 2.7e-15 Identity = 52/119 (43.70%), Postives = 71/119 (59.66%), Query Frame = 1
BLAST of CSPI05G20160 vs. Swiss-Prot
Match: CLE13_ARATH (CLAVATA3/ESR (CLE)-related protein 13 OS=Arabidopsis thaliana GN=CLE13 PE=2 SV=1) HSP 1 Score: 63.2 bits (152), Expect = 2.2e-09 Identity = 47/119 (39.50%), Postives = 59/119 (49.58%), Query Frame = 1
BLAST of CSPI05G20160 vs. TrEMBL
Match: A0A0A0KPQ3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G577440 PE=4 SV=1) HSP 1 Score: 232.6 bits (592), Expect = 2.4e-58 Identity = 115/117 (98.29%), Postives = 116/117 (99.15%), Query Frame = 1
BLAST of CSPI05G20160 vs. TrEMBL
Match: A0A061EC34_THECC (Clavata3/esr-related 12, putative OS=Theobroma cacao GN=TCM_011877 PE=4 SV=1) HSP 1 Score: 114.0 bits (284), Expect = 1.2e-22 Identity = 65/117 (55.56%), Postives = 80/117 (68.38%), Query Frame = 1
BLAST of CSPI05G20160 vs. TrEMBL
Match: V4TMC3_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10033717mg PE=4 SV=1) HSP 1 Score: 112.8 bits (281), Expect = 2.7e-22 Identity = 65/127 (51.18%), Postives = 81/127 (63.78%), Query Frame = 1
BLAST of CSPI05G20160 vs. TrEMBL
Match: A5B735_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_020013 PE=4 SV=1) HSP 1 Score: 106.7 bits (265), Expect = 2.0e-20 Identity = 65/120 (54.17%), Postives = 78/120 (65.00%), Query Frame = 1
BLAST of CSPI05G20160 vs. TrEMBL
Match: B9HIY0_POPTR (Clavata3/esr-related 12 family protein OS=Populus trichocarpa GN=POPTR_0008s11450g PE=4 SV=1) HSP 1 Score: 103.6 bits (257), Expect = 1.7e-19 Identity = 62/117 (52.99%), Postives = 74/117 (63.25%), Query Frame = 1
BLAST of CSPI05G20160 vs. TAIR10
Match: AT1G68795.1 (AT1G68795.1 CLAVATA3/ESR-RELATED 12) HSP 1 Score: 82.8 bits (203), Expect = 1.5e-16 Identity = 52/119 (43.70%), Postives = 71/119 (59.66%), Query Frame = 1
BLAST of CSPI05G20160 vs. TAIR10
Match: AT1G73965.1 (AT1G73965.1 CLAVATA3/ESR-RELATED 13) HSP 1 Score: 63.2 bits (152), Expect = 1.3e-10 Identity = 47/119 (39.50%), Postives = 59/119 (49.58%), Query Frame = 1
BLAST of CSPI05G20160 vs. TAIR10
Match: AT1G26600.1 (AT1G26600.1 CLAVATA3/ESR-RELATED 9) HSP 1 Score: 47.8 bits (112), Expect = 5.5e-06 Identity = 19/26 (73.08%), Postives = 23/26 (88.46%), Query Frame = 1
BLAST of CSPI05G20160 vs. NCBI nr
Match: gi|700196376|gb|KGN51553.1| (hypothetical protein Csa_5G577440 [Cucumis sativus]) HSP 1 Score: 232.6 bits (592), Expect = 3.4e-58 Identity = 115/117 (98.29%), Postives = 116/117 (99.15%), Query Frame = 1
BLAST of CSPI05G20160 vs. NCBI nr
Match: gi|590701118|ref|XP_007046321.1| (Clavata3/esr-related 12, putative [Theobroma cacao]) HSP 1 Score: 114.0 bits (284), Expect = 1.8e-22 Identity = 65/117 (55.56%), Postives = 80/117 (68.38%), Query Frame = 1
BLAST of CSPI05G20160 vs. NCBI nr
Match: gi|567890451|ref|XP_006437746.1| (hypothetical protein CICLE_v10033717mg [Citrus clementina]) HSP 1 Score: 112.8 bits (281), Expect = 3.9e-22 Identity = 65/127 (51.18%), Postives = 81/127 (63.78%), Query Frame = 1
BLAST of CSPI05G20160 vs. NCBI nr
Match: gi|731370673|ref|XP_010648002.1| (PREDICTED: CLAVATA3/ESR (CLE)-related protein 12 [Vitis vinifera]) HSP 1 Score: 106.7 bits (265), Expect = 2.8e-20 Identity = 65/120 (54.17%), Postives = 78/120 (65.00%), Query Frame = 1
BLAST of CSPI05G20160 vs. NCBI nr
Match: gi|224101673|ref|XP_002312377.1| (clavata3/esr-related 12 family protein [Populus trichocarpa]) HSP 1 Score: 103.6 bits (257), Expect = 2.4e-19 Identity = 62/117 (52.99%), Postives = 74/117 (63.25%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene:
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