CSPI05G20160 (gene) Wild cucumber (PI 183967)

NameCSPI05G20160
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionCLAVATA3/ESR (CLE)-related protein 12
LocationChr5 : 21338121 .. 21338629 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TTTCTCCACTGGAAAAAAGAAAAAAAAAACCATCTTTGAACTTTAATTTTTGATTGGCGTTTTAGTGCTCCGATCCATGCTTCCCTTTCAAATCTTTCCTCTTCTCTCTCCCCTTCTTTCTCCATGACATTGAAAATTTCCCACTTCCTTTTTACCATGCTTTGGATCTCTCTTCTTCTCTTATTACTTCATGAACTAAATATCTTCAAGGCCAAAATGAATCACAAACCAACACCAACCATCACATTTTCCTATTATTCTTCCTCCAACCATCCCTTGATAACAAGGAAAGTACTAACCAGCAAGGTAGACTTCACCCCCTTTTTCCGCCACCGCCACCCGAATCAACCACGAAAGCATTCGCACCCCACCGATACCAACGTCGTTGACGAACCAGCCCCCAGCGACATTGATCCTCGCTACGGCGTCGAGAAGCGACGAGTCCCGACCGGTCCAAACCCATTGCACCACTGATGCATACGAAAGGAAAAAGAAGAAAAGGTCCATAG

mRNA sequence

ATGACATTGAAAATTTCCCACTTCCTTTTTACCATGCTTTGGATCTCTCTTCTTCTCTTATTACTTCATGAACTAAATATCTTCAAGGCCAAAATGAATCACAAACCAACACCAACCATCACATTTTCCTATTATTCTTCCTCCAACCATCCCTTGATAACAAGGAAAGTACTAACCAGCAAGGTAGACTTCACCCCCTTTTTCCGCCACCGCCACCCGAATCAACCACGAAAGCATTCGCACCCCACCGATACCAACGTCGTTGACGAACCAGCCCCCAGCGACATTGATCCTCGCTACGGCGTCGAGAAGCGACGAGTCCCGACCGGTCCAAACCCATTGCACCACTGA

Coding sequence (CDS)

ATGACATTGAAAATTTCCCACTTCCTTTTTACCATGCTTTGGATCTCTCTTCTTCTCTTATTACTTCATGAACTAAATATCTTCAAGGCCAAAATGAATCACAAACCAACACCAACCATCACATTTTCCTATTATTCTTCCTCCAACCATCCCTTGATAACAAGGAAAGTACTAACCAGCAAGGTAGACTTCACCCCCTTTTTCCGCCACCGCCACCCGAATCAACCACGAAAGCATTCGCACCCCACCGATACCAACGTCGTTGACGAACCAGCCCCCAGCGACATTGATCCTCGCTACGGCGTCGAGAAGCGACGAGTCCCGACCGGTCCAAACCCATTGCACCACTGA
BLAST of CSPI05G20160 vs. Swiss-Prot
Match: CLE12_ARATH (CLAVATA3/ESR (CLE)-related protein 12 OS=Arabidopsis thaliana GN=CLE12 PE=2 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 2.7e-15
Identity = 52/119 (43.70%), Postives = 71/119 (59.66%), Query Frame = 1

Query: 1   MTLKISHFLFTMLWISLLLLLLHEL---NIFKAKMNHKPTPTITFSYYSSSNHPLITRKV 60
           M LK S  LF +LW+SL  LLLH L   N  +    +   P++   +Y S  + L++RKV
Sbjct: 10  MALKFSQILFIVLWLSLFFLLLHHLYSLNFRRLYSLNAVEPSLLKQHYRS--YRLVSRKV 69

Query: 61  LTSKVDFTPFFRHRHPNQPRKHSHPTDTNVVDEPAPSDIDPRYGVEKRRVPTGPNPLHH 117
           L+ + DFTPF    H     +H+H +     ++    +IDPRYGVEKRRVP+GPNPLHH
Sbjct: 70  LSDRFDFTPF----HSRDNSRHNHRSG----EQYDGDEIDPRYGVEKRRVPSGPNPLHH 118

BLAST of CSPI05G20160 vs. Swiss-Prot
Match: CLE13_ARATH (CLAVATA3/ESR (CLE)-related protein 13 OS=Arabidopsis thaliana GN=CLE13 PE=2 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 2.2e-09
Identity = 47/119 (39.50%), Postives = 59/119 (49.58%), Query Frame = 1

Query: 2   TLKISHFLFTMLWISLLLLLLHEL--NIFKAKMNHKPTPTITFS--YYSSSNHPLITRKV 61
           T ++SH L  +LWISLL+ +   L  N     +N  P+P IT    YY      L  +  
Sbjct: 3   TTRVSHVLGFLLWISLLIFVSIGLFGNFSSKPINPFPSPVITLPALYYRPGRRALAVKTF 62

Query: 62  LTSKVDFTPFFRHRHPNQPRKHSHPTDTNVVDEPAPSDIDPRYGVEKRRVPTGPNPLHH 117
                DFTPF +    +  RK               S+IDPRYGVEKR VP+GPNPLHH
Sbjct: 63  -----DFTPFLKDLRRSNHRKAL---------PAGGSEIDPRYGVEKRLVPSGPNPLHH 107

BLAST of CSPI05G20160 vs. TrEMBL
Match: A0A0A0KPQ3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G577440 PE=4 SV=1)

HSP 1 Score: 232.6 bits (592), Expect = 2.4e-58
Identity = 115/117 (98.29%), Postives = 116/117 (99.15%), Query Frame = 1

Query: 1   MTLKISHFLFTMLWISLLLLLLHELNIFKAKMNHKPTPTITFSYYS-SSNHPLITRKVLT 60
           MTLKISHFLFTMLWISLLLLLLHELNIFKAKMNH+PTPTITFSYYS SSNHPLITRKVLT
Sbjct: 1   MTLKISHFLFTMLWISLLLLLLHELNIFKAKMNHRPTPTITFSYYSSSSNHPLITRKVLT 60

Query: 61  SKVDFTPFFRHRHPNQPRKHSHPTDTNVVDEPAPSDIDPRYGVEKRRVPTGPNPLHH 117
           SKVDFTPFFRHRHPNQPRKHSHPTDTNVVDEPAPSDIDPRYGVEKRRVPTGPNPLHH
Sbjct: 61  SKVDFTPFFRHRHPNQPRKHSHPTDTNVVDEPAPSDIDPRYGVEKRRVPTGPNPLHH 117

BLAST of CSPI05G20160 vs. TrEMBL
Match: A0A061EC34_THECC (Clavata3/esr-related 12, putative OS=Theobroma cacao GN=TCM_011877 PE=4 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 1.2e-22
Identity = 65/117 (55.56%), Postives = 80/117 (68.38%), Query Frame = 1

Query: 1   MTLKISHFLF-TMLWISLLLLLLHELNIFKAKMNHKPTPTITFSYYSSSNHPLITRKVLT 60
           M  K+SH +F T+LW+SLL LLLHE + FK K+N +   +ITFS  S S +PLI+RKV+ 
Sbjct: 1   MAWKVSHLVFFTVLWLSLLFLLLHEFHSFKFKINGRQASSITFS--SLSRNPLISRKVVA 60

Query: 61  SKVDFTPFFRHRHPNQPRKHSHPTDTNVVDEPAPSDIDPRYGVEKRRVPTGPNPLHH 117
            K DFTPF +H    Q  KHS   D     + A ++IDPRYGVEKR VPTGPNPLHH
Sbjct: 61  GKFDFTPFQKHHQQEQQDKHS--PDMKRQSQAADTEIDPRYGVEKRLVPTGPNPLHH 113

BLAST of CSPI05G20160 vs. TrEMBL
Match: V4TMC3_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10033717mg PE=4 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 2.7e-22
Identity = 65/127 (51.18%), Postives = 81/127 (63.78%), Query Frame = 1

Query: 1   MTLKISHFLFTMLWISLLLLLLHELNIFKAKMNHKPTPTITFS-----YYSSSNHPLITR 60
           M L+ SH +F  LW+SLLL L HEL  FK+K+N     +IT +     +YS S +PLI R
Sbjct: 1   MALRFSHLIFITLWLSLLLFLFHELYNFKSKINTNTKQSITTTTSNTIHYSLSKYPLINR 60

Query: 61  KVLTSKVDFTPFFRHRHPNQPRKHSHPTDTNVVDEPAPS------DIDPRYGVEKRRVPT 117
           KVL SK DFTPF +H   + P +   P D +   +PAP+      +IDPRYGVEKR VPT
Sbjct: 61  KVLASKFDFTPFQKHHEKSSPSQELQPKDHH---QPAPAADHGSAEIDPRYGVEKRLVPT 120

BLAST of CSPI05G20160 vs. TrEMBL
Match: A5B735_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_020013 PE=4 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 2.0e-20
Identity = 65/120 (54.17%), Postives = 78/120 (65.00%), Query Frame = 1

Query: 4   KISHFLFTMLWISLLLLLLHELNIFKAKMNHKPTPTITFSYYSSSN---HPLITRKVLTS 63
           +ISH LF +LW+S+LLL LHE        N KP    + SYYSSS+    P I+RKVL+S
Sbjct: 5   RISHLLFVLLWLSILLLFLHEY------YNVKPR---SISYYSSSSVSRQPPISRKVLSS 64

Query: 64  KVDFTPF----FRHRHPNQPRKHSHPTDTNVVDEPAPSDIDPRYGVEKRRVPTGPNPLHH 117
           K DFTPF     RHRH +   +H    +  V  EPA ++IDPRYGVEKR VPTGPNPLHH
Sbjct: 65  KFDFTPFQKQRHRHRH-HHSHRHGRSPNMQVQPEPAGTEIDPRYGVEKRLVPTGPNPLHH 114

BLAST of CSPI05G20160 vs. TrEMBL
Match: B9HIY0_POPTR (Clavata3/esr-related 12 family protein OS=Populus trichocarpa GN=POPTR_0008s11450g PE=4 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 1.7e-19
Identity = 62/117 (52.99%), Postives = 74/117 (63.25%), Query Frame = 1

Query: 1   MTLKISHFLFTMLWISLLLLLLHELNIFKAKMNHKPTPTITFSYYSSSNHPLITRKVLTS 60
           M LKISH    +L + LLLL  HEL  FK+K+N+        S  S S+HP   RKVL S
Sbjct: 1   MALKISHIPCALLCLYLLLLAFHELRNFKSKINNNKDQINNISSSSISHHPFHNRKVLVS 60

Query: 61  KVDFTPFFRHRHPNQPRKHSHP-TDTNVVDEPAPSDIDPRYGVEKRRVPTGPNPLHH 117
           K DFTPF +HR     ++H +P  D  V  + A S+IDPRYGVEKR VPTGPNPLHH
Sbjct: 61  KFDFTPFQKHRQ----QQHENPLPDEEVHKKAARSEIDPRYGVEKRLVPTGPNPLHH 113

BLAST of CSPI05G20160 vs. TAIR10
Match: AT1G68795.1 (AT1G68795.1 CLAVATA3/ESR-RELATED 12)

HSP 1 Score: 82.8 bits (203), Expect = 1.5e-16
Identity = 52/119 (43.70%), Postives = 71/119 (59.66%), Query Frame = 1

Query: 1   MTLKISHFLFTMLWISLLLLLLHEL---NIFKAKMNHKPTPTITFSYYSSSNHPLITRKV 60
           M LK S  LF +LW+SL  LLLH L   N  +    +   P++   +Y S  + L++RKV
Sbjct: 10  MALKFSQILFIVLWLSLFFLLLHHLYSLNFRRLYSLNAVEPSLLKQHYRS--YRLVSRKV 69

Query: 61  LTSKVDFTPFFRHRHPNQPRKHSHPTDTNVVDEPAPSDIDPRYGVEKRRVPTGPNPLHH 117
           L+ + DFTPF    H     +H+H +     ++    +IDPRYGVEKRRVP+GPNPLHH
Sbjct: 70  LSDRFDFTPF----HSRDNSRHNHRSG----EQYDGDEIDPRYGVEKRRVPSGPNPLHH 118

BLAST of CSPI05G20160 vs. TAIR10
Match: AT1G73965.1 (AT1G73965.1 CLAVATA3/ESR-RELATED 13)

HSP 1 Score: 63.2 bits (152), Expect = 1.3e-10
Identity = 47/119 (39.50%), Postives = 59/119 (49.58%), Query Frame = 1

Query: 2   TLKISHFLFTMLWISLLLLLLHEL--NIFKAKMNHKPTPTITFS--YYSSSNHPLITRKV 61
           T ++SH L  +LWISLL+ +   L  N     +N  P+P IT    YY      L  +  
Sbjct: 3   TTRVSHVLGFLLWISLLIFVSIGLFGNFSSKPINPFPSPVITLPALYYRPGRRALAVKTF 62

Query: 62  LTSKVDFTPFFRHRHPNQPRKHSHPTDTNVVDEPAPSDIDPRYGVEKRRVPTGPNPLHH 117
                DFTPF +    +  RK               S+IDPRYGVEKR VP+GPNPLHH
Sbjct: 63  -----DFTPFLKDLRRSNHRKAL---------PAGGSEIDPRYGVEKRLVPSGPNPLHH 107

BLAST of CSPI05G20160 vs. TAIR10
Match: AT1G26600.1 (AT1G26600.1 CLAVATA3/ESR-RELATED 9)

HSP 1 Score: 47.8 bits (112), Expect = 5.5e-06
Identity = 19/26 (73.08%), Postives = 23/26 (88.46%), Query Frame = 1

Query: 91  PAPSDIDPRYGVEKRRVPTGPNPLHH 117
           P P +IDPRYGV+KR VP+GPNPLH+
Sbjct: 95  PPPPEIDPRYGVDKRLVPSGPNPLHN 120

BLAST of CSPI05G20160 vs. NCBI nr
Match: gi|700196376|gb|KGN51553.1| (hypothetical protein Csa_5G577440 [Cucumis sativus])

HSP 1 Score: 232.6 bits (592), Expect = 3.4e-58
Identity = 115/117 (98.29%), Postives = 116/117 (99.15%), Query Frame = 1

Query: 1   MTLKISHFLFTMLWISLLLLLLHELNIFKAKMNHKPTPTITFSYYS-SSNHPLITRKVLT 60
           MTLKISHFLFTMLWISLLLLLLHELNIFKAKMNH+PTPTITFSYYS SSNHPLITRKVLT
Sbjct: 1   MTLKISHFLFTMLWISLLLLLLHELNIFKAKMNHRPTPTITFSYYSSSSNHPLITRKVLT 60

Query: 61  SKVDFTPFFRHRHPNQPRKHSHPTDTNVVDEPAPSDIDPRYGVEKRRVPTGPNPLHH 117
           SKVDFTPFFRHRHPNQPRKHSHPTDTNVVDEPAPSDIDPRYGVEKRRVPTGPNPLHH
Sbjct: 61  SKVDFTPFFRHRHPNQPRKHSHPTDTNVVDEPAPSDIDPRYGVEKRRVPTGPNPLHH 117

BLAST of CSPI05G20160 vs. NCBI nr
Match: gi|590701118|ref|XP_007046321.1| (Clavata3/esr-related 12, putative [Theobroma cacao])

HSP 1 Score: 114.0 bits (284), Expect = 1.8e-22
Identity = 65/117 (55.56%), Postives = 80/117 (68.38%), Query Frame = 1

Query: 1   MTLKISHFLF-TMLWISLLLLLLHELNIFKAKMNHKPTPTITFSYYSSSNHPLITRKVLT 60
           M  K+SH +F T+LW+SLL LLLHE + FK K+N +   +ITFS  S S +PLI+RKV+ 
Sbjct: 1   MAWKVSHLVFFTVLWLSLLFLLLHEFHSFKFKINGRQASSITFS--SLSRNPLISRKVVA 60

Query: 61  SKVDFTPFFRHRHPNQPRKHSHPTDTNVVDEPAPSDIDPRYGVEKRRVPTGPNPLHH 117
            K DFTPF +H    Q  KHS   D     + A ++IDPRYGVEKR VPTGPNPLHH
Sbjct: 61  GKFDFTPFQKHHQQEQQDKHS--PDMKRQSQAADTEIDPRYGVEKRLVPTGPNPLHH 113

BLAST of CSPI05G20160 vs. NCBI nr
Match: gi|567890451|ref|XP_006437746.1| (hypothetical protein CICLE_v10033717mg [Citrus clementina])

HSP 1 Score: 112.8 bits (281), Expect = 3.9e-22
Identity = 65/127 (51.18%), Postives = 81/127 (63.78%), Query Frame = 1

Query: 1   MTLKISHFLFTMLWISLLLLLLHELNIFKAKMNHKPTPTITFS-----YYSSSNHPLITR 60
           M L+ SH +F  LW+SLLL L HEL  FK+K+N     +IT +     +YS S +PLI R
Sbjct: 1   MALRFSHLIFITLWLSLLLFLFHELYNFKSKINTNTKQSITTTTSNTIHYSLSKYPLINR 60

Query: 61  KVLTSKVDFTPFFRHRHPNQPRKHSHPTDTNVVDEPAPS------DIDPRYGVEKRRVPT 117
           KVL SK DFTPF +H   + P +   P D +   +PAP+      +IDPRYGVEKR VPT
Sbjct: 61  KVLASKFDFTPFQKHHEKSSPSQELQPKDHH---QPAPAADHGSAEIDPRYGVEKRLVPT 120

BLAST of CSPI05G20160 vs. NCBI nr
Match: gi|731370673|ref|XP_010648002.1| (PREDICTED: CLAVATA3/ESR (CLE)-related protein 12 [Vitis vinifera])

HSP 1 Score: 106.7 bits (265), Expect = 2.8e-20
Identity = 65/120 (54.17%), Postives = 78/120 (65.00%), Query Frame = 1

Query: 4   KISHFLFTMLWISLLLLLLHELNIFKAKMNHKPTPTITFSYYSSSN---HPLITRKVLTS 63
           +ISH LF +LW+S+LLL LHE        N KP    + SYYSSS+    P I+RKVL+S
Sbjct: 5   RISHLLFVLLWLSILLLFLHEY------YNVKPR---SISYYSSSSVSRQPPISRKVLSS 64

Query: 64  KVDFTPF----FRHRHPNQPRKHSHPTDTNVVDEPAPSDIDPRYGVEKRRVPTGPNPLHH 117
           K DFTPF     RHRH +   +H    +  V  EPA ++IDPRYGVEKR VPTGPNPLHH
Sbjct: 65  KFDFTPFQKQRHRHRH-HHSHRHGRSPNMQVQPEPAGTEIDPRYGVEKRLVPTGPNPLHH 114

BLAST of CSPI05G20160 vs. NCBI nr
Match: gi|224101673|ref|XP_002312377.1| (clavata3/esr-related 12 family protein [Populus trichocarpa])

HSP 1 Score: 103.6 bits (257), Expect = 2.4e-19
Identity = 62/117 (52.99%), Postives = 74/117 (63.25%), Query Frame = 1

Query: 1   MTLKISHFLFTMLWISLLLLLLHELNIFKAKMNHKPTPTITFSYYSSSNHPLITRKVLTS 60
           M LKISH    +L + LLLL  HEL  FK+K+N+        S  S S+HP   RKVL S
Sbjct: 1   MALKISHIPCALLCLYLLLLAFHELRNFKSKINNNKDQINNISSSSISHHPFHNRKVLVS 60

Query: 61  KVDFTPFFRHRHPNQPRKHSHP-TDTNVVDEPAPSDIDPRYGVEKRRVPTGPNPLHH 117
           K DFTPF +HR     ++H +P  D  V  + A S+IDPRYGVEKR VPTGPNPLHH
Sbjct: 61  KFDFTPFQKHRQ----QQHENPLPDEEVHKKAARSEIDPRYGVEKRLVPTGPNPLHH 113

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
CLE12_ARATH2.7e-1543.70CLAVATA3/ESR (CLE)-related protein 12 OS=Arabidopsis thaliana GN=CLE12 PE=2 SV=1[more]
CLE13_ARATH2.2e-0939.50CLAVATA3/ESR (CLE)-related protein 13 OS=Arabidopsis thaliana GN=CLE13 PE=2 SV=1[more]
Match NameE-valueIdentityDescription
A0A0A0KPQ3_CUCSA2.4e-5898.29Uncharacterized protein OS=Cucumis sativus GN=Csa_5G577440 PE=4 SV=1[more]
A0A061EC34_THECC1.2e-2255.56Clavata3/esr-related 12, putative OS=Theobroma cacao GN=TCM_011877 PE=4 SV=1[more]
V4TMC3_9ROSI2.7e-2251.18Uncharacterized protein OS=Citrus clementina GN=CICLE_v10033717mg PE=4 SV=1[more]
A5B735_VITVI2.0e-2054.17Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_020013 PE=4 SV=1[more]
B9HIY0_POPTR1.7e-1952.99Clavata3/esr-related 12 family protein OS=Populus trichocarpa GN=POPTR_0008s1145... [more]
Match NameE-valueIdentityDescription
AT1G68795.11.5e-1643.70 CLAVATA3/ESR-RELATED 12[more]
AT1G73965.11.3e-1039.50 CLAVATA3/ESR-RELATED 13[more]
AT1G26600.15.5e-0673.08 CLAVATA3/ESR-RELATED 9[more]
Match NameE-valueIdentityDescription
gi|700196376|gb|KGN51553.1|3.4e-5898.29hypothetical protein Csa_5G577440 [Cucumis sativus][more]
gi|590701118|ref|XP_007046321.1|1.8e-2255.56Clavata3/esr-related 12, putative [Theobroma cacao][more]
gi|567890451|ref|XP_006437746.1|3.9e-2251.18hypothetical protein CICLE_v10033717mg [Citrus clementina][more]
gi|731370673|ref|XP_010648002.1|2.8e-2054.17PREDICTED: CLAVATA3/ESR (CLE)-related protein 12 [Vitis vinifera][more]
gi|224101673|ref|XP_002312377.1|2.4e-1952.99clavata3/esr-related 12 family protein [Populus trichocarpa][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI05G20160.1CSPI05G20160.1mRNA


Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR34359FAMILY NOT NAMEDcoord: 1..116
score: 3.0
NoneNo IPR availablePANTHERPTHR34359:SF1CLAVATA3/ESR (CLE)-RELATED PROTEIN 11-RELATEDcoord: 1..116
score: 3.0