CmoCh15G014950 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh15G014950
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionCLAVATA3/ESR (CLE)-related protein 12
LocationCmo_Chr15 : 10131020 .. 10131325 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACATTCAAAATCTCCCACTTCCTTTTTACCCTACTCTGGATCTCTCTTCTCCTCTTATTTCTTCATGAACTAAACCTCTTCAAACCCAAATTCAATCCAAAACCATCACCAACCATCACCTTTTCCTCAACAAGGAAGGTACTAGCCAACAAAGTAGACTTCACCCCCTTTGTCCATCACCGCGGAACGAATCGGCCTGCAAACCATTCCCATCCCACCACCGACGACAACGACGACATCGATCCCCGCTACGGTGTCGAGAAGCGACGAGTCCCAACCGGTCCAAACCCGTTGCACCATTGA

mRNA sequence

ATGACATTCAAAATCTCCCACTTCCTTTTTACCCTACTCTGGATCTCTCTTCTCCTCTTATTTCTTCATGAACTAAACCTCTTCAAACCCAAATTCAATCCAAAACCATCACCAACCATCACCTTTTCCTCAACAAGGAAGGTACTAGCCAACAAAGTAGACTTCACCCCCTTTGTCCATCACCGCGGAACGAATCGGCCTGCAAACCATTCCCATCCCACCACCGACGACAACGACGACATCGATCCCCGCTACGGTGTCGAGAAGCGACGAGTCCCAACCGGTCCAAACCCGTTGCACCATTGA

Coding sequence (CDS)

ATGACATTCAAAATCTCCCACTTCCTTTTTACCCTACTCTGGATCTCTCTTCTCCTCTTATTTCTTCATGAACTAAACCTCTTCAAACCCAAATTCAATCCAAAACCATCACCAACCATCACCTTTTCCTCAACAAGGAAGGTACTAGCCAACAAAGTAGACTTCACCCCCTTTGTCCATCACCGCGGAACGAATCGGCCTGCAAACCATTCCCATCCCACCACCGACGACAACGACGACATCGATCCCCGCTACGGTGTCGAGAAGCGACGAGTCCCAACCGGTCCAAACCCGTTGCACCATTGA
Homology
[Close]
BLAST of CmoCh15G014950 vs. Swiss-Prot
Match: CLE12_ARATH (CLAVATA3/ESR (CLE)-related protein 12 OS=Arabidopsis thaliana GN=CLE12 PE=2 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 1.5e-14
Identity = 51/112 (45.54%), Postives = 61/112 (54.46%), Query Frame = 1 

Query: 1   MTFKISHFLFTLLWISLLLLFLHEL-----------NLFKPKFNPKPSPTITFSSTRKVL 60
           M  K S  LF +LW+SL  L LH L           N  +P    +   +    S RKVL
Sbjct: 10  MALKFSQILFIVLWLSLFFLLLHHLYSLNFRRLYSLNAVEPSLLKQHYRSYRLVS-RKVL 69

Query: 61  ANKVDFTPFVHHRGTNRPANHSHPTTDDNDDIDPRYGVEKRRVPTGPNPLHH 102
           +++ DFTPF  H   N   NH      D D+IDPRYGVEKRRVP+GPNPLHH
Sbjct: 70  SDRFDFTPF--HSRDNSRHNHRSGEQYDGDEIDPRYGVEKRRVPSGPNPLHH 118

[Close]
BLAST of CmoCh15G014950 vs. Swiss-Prot
Match: CLE13_ARATH (CLAVATA3/ESR (CLE)-related protein 13 OS=Arabidopsis thaliana GN=CLE13 PE=2 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 1.1e-12
Identity = 51/108 (47.22%), Postives = 60/108 (55.56%), Query Frame = 1 

Query: 2   TFKISHFLFTLLWISLLLLFLHEL--NLFKPKFNPKPSPTITFSST-----RKVLANKV- 61
           T ++SH L  LLWISLL+     L  N      NP PSP IT  +      R+ LA K  
Sbjct: 3   TTRVSHVLGFLLWISLLIFVSIGLFGNFSSKPINPFPSPVITLPALYYRPGRRALAVKTF 62

Query: 62  DFTPFVHHRGTNRPANHSHPTTDDNDDIDPRYGVEKRRVPTGPNPLHH 102
           DFTPF+      R +NH         +IDPRYGVEKR VP+GPNPLHH
Sbjct: 63  DFTPFLKDL---RRSNHRKALPAGGSEIDPRYGVEKRLVPSGPNPLHH 107

[Close]
BLAST of CmoCh15G014950 vs. TrEMBL
Match: A0A0A0KPQ3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G577440 PE=4 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 9.6e-32
Identity = 79/118 (66.95%), Postives = 85/118 (72.03%), Query Frame = 1 

Query: 1   MTFKISHFLFTLLWISLLLLFLHELNLFKPKFNPKPSPTITFS----------STRKVLA 60
           MT KISHFLFT+LWISLLLL LHELN+FK K N +P+PTITFS           TRKVL 
Sbjct: 1   MTLKISHFLFTMLWISLLLLLLHELNIFKAKMNHRPTPTITFSYYSSSSNHPLITRKVLT 60

Query: 61  NKVDFTPFVHHRGTNRPANHSHPTTDDN-------DDIDPRYGVEKRRVPTGPNPLHH 102
           +KVDFTPF  HR  N+P  HSHP TD N        DIDPRYGVEKRRVPTGPNPLHH
Sbjct: 61  SKVDFTPFFRHRHPNQPRKHSHP-TDTNVVDEPAPSDIDPRYGVEKRRVPTGPNPLHH 117

[Close]
BLAST of CmoCh15G014950 vs. TrEMBL
Match: A0A061EC34_THECC (Clavata3/esr-related 12, putative OS=Theobroma cacao GN=TCM_011877 PE=4 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 1.8e-17
Identity = 57/113 (50.44%), Postives = 72/113 (63.72%), Query Frame = 1 

Query: 1   MTFKISHFLF-TLLWISLLLLFLHELNLFKPKFNPKPSPTITFSS-------TRKVLANK 60
           M +K+SH +F T+LW+SLL L LHE + FK K N + + +ITFSS       +RKV+A K
Sbjct: 1   MAWKVSHLVFFTVLWLSLLFLLLHEFHSFKFKINGRQASSITFSSLSRNPLISRKVVAGK 60

Query: 61  VDFTPFVHHRGTNRPANHS----HPTTDDNDDIDPRYGVEKRRVPTGPNPLHH 102
            DFTPF  H    +   HS      +   + +IDPRYGVEKR VPTGPNPLHH
Sbjct: 61  FDFTPFQKHHQQEQQDKHSPDMKRQSQAADTEIDPRYGVEKRLVPTGPNPLHH 113

[Close]
BLAST of CmoCh15G014950 vs. TrEMBL
Match: V4TMC3_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10033717mg PE=4 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 4.8e-15
Identity = 57/124 (45.97%), Postives = 66/124 (53.23%), Query Frame = 1 

Query: 1   MTFKISHFLFTLLWISLLLLFLHELNLFKPKFNP--KPSPTITFSST------------R 60
           M  + SH +F  LW+SLLL   HEL  FK K N   K S T T S+T            R
Sbjct: 1   MALRFSHLIFITLWLSLLLFLFHELYNFKSKINTNTKQSITTTTSNTIHYSLSKYPLINR 60

Query: 61  KVLANKVDFTPFVHHRGTNRPANHSHP---------TTDDNDDIDPRYGVEKRRVPTGPN 102
           KVLA+K DFTPF  H   + P+    P             + +IDPRYGVEKR VPTGPN
Sbjct: 61  KVLASKFDFTPFQKHHEKSSPSQELQPKDHHQPAPAADHGSAEIDPRYGVEKRLVPTGPN 120

[Close]
BLAST of CmoCh15G014950 vs. TrEMBL
Match: V7BG00_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_007G101800g PE=4 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 8.2e-15
Identity = 58/110 (52.73%), Postives = 66/110 (60.00%), Query Frame = 1 

Query: 1   MTFKISHFLFTLLWISLLLLFLHELNLFKPKFNPKPS--PTITFSST------RKVLANK 60
           M FKIS  +  LL +SLLLL  HE    K K N   +  PT + SS+      RK LA K
Sbjct: 1   MAFKISQAVHILLLMSLLLLVFHEYYNLKSKINKNHTTQPTHSISSSHHLLVGRKFLATK 60

Query: 61  VDFTPFV-HHRGTNRPANHSHPTTDDNDDIDPRYGVEKRRVPTGPNPLHH 102
            DF+PF  HH   ++P    HP   D D IDPRYGVEKRRVPTGPNPLHH
Sbjct: 61  FDFSPFFKHHHKHHQPGVAVHPDPSDTD-IDPRYGVEKRRVPTGPNPLHH 109

[Close]
BLAST of CmoCh15G014950 vs. TrEMBL
Match: A5B735_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_020013 PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 3.1e-14
Identity = 56/117 (47.86%), Postives = 67/117 (57.26%), Query Frame = 1 

Query: 4   KISHFLFTLLWISLLLLFLHELNLFKPKFNPKPSPTITFSS---------TRKVLANKVD 63
           +ISH LF LLW+S+LLLFLHE       +N KP     +SS         +RKVL++K D
Sbjct: 5   RISHLLFVLLWLSILLLFLHEY------YNVKPRSISYYSSSSVSRQPPISRKVLSSKFD 64

Query: 64  FTPFVHHRGTNRPANHSH----------PTTDDNDDIDPRYGVEKRRVPTGPNPLHH 102
           FTPF   R  +R  +HSH                 +IDPRYGVEKR VPTGPNPLHH
Sbjct: 65  FTPFQKQRHRHR-HHHSHRHGRSPNMQVQPEPAGTEIDPRYGVEKRLVPTGPNPLHH 114

[Close]
BLAST of CmoCh15G014950 vs. TAIR10
Match: AT1G68795.1 (AT1G68795.1 CLAVATA3/ESR-RELATED 12)

HSP 1 Score: 80.1 bits (196), Expect = 8.6e-16
Identity = 51/112 (45.54%), Postives = 61/112 (54.46%), Query Frame = 1 

Query: 1   MTFKISHFLFTLLWISLLLLFLHEL-----------NLFKPKFNPKPSPTITFSSTRKVL 60
           M  K S  LF +LW+SL  L LH L           N  +P    +   +    S RKVL
Sbjct: 10  MALKFSQILFIVLWLSLFFLLLHHLYSLNFRRLYSLNAVEPSLLKQHYRSYRLVS-RKVL 69

Query: 61  ANKVDFTPFVHHRGTNRPANHSHPTTDDNDDIDPRYGVEKRRVPTGPNPLHH 102
           +++ DFTPF  H   N   NH      D D+IDPRYGVEKRRVP+GPNPLHH
Sbjct: 70  SDRFDFTPF--HSRDNSRHNHRSGEQYDGDEIDPRYGVEKRRVPSGPNPLHH 118

[Close]
BLAST of CmoCh15G014950 vs. TAIR10
Match: AT1G73965.1 (AT1G73965.1 CLAVATA3/ESR-RELATED 13)

HSP 1 Score: 73.9 bits (180), Expect = 6.2e-14
Identity = 51/108 (47.22%), Postives = 60/108 (55.56%), Query Frame = 1 

Query: 2   TFKISHFLFTLLWISLLLLFLHEL--NLFKPKFNPKPSPTITFSST-----RKVLANKV- 61
           T ++SH L  LLWISLL+     L  N      NP PSP IT  +      R+ LA K  
Sbjct: 3   TTRVSHVLGFLLWISLLIFVSIGLFGNFSSKPINPFPSPVITLPALYYRPGRRALAVKTF 62

Query: 62  DFTPFVHHRGTNRPANHSHPTTDDNDDIDPRYGVEKRRVPTGPNPLHH 102
           DFTPF+      R +NH         +IDPRYGVEKR VP+GPNPLHH
Sbjct: 63  DFTPFLKDL---RRSNHRKALPAGGSEIDPRYGVEKRLVPSGPNPLHH 107

[Close]
BLAST of CmoCh15G014950 vs. NCBI nr
Match: gi|700196376|gb|KGN51553.1| (hypothetical protein Csa_5G577440 [Cucumis sativus])

HSP 1 Score: 144.1 bits (362), Expect = 1.4e-31
Identity = 79/118 (66.95%), Postives = 85/118 (72.03%), Query Frame = 1 

Query: 1   MTFKISHFLFTLLWISLLLLFLHELNLFKPKFNPKPSPTITFS----------STRKVLA 60
           MT KISHFLFT+LWISLLLL LHELN+FK K N +P+PTITFS           TRKVL 
Sbjct: 1   MTLKISHFLFTMLWISLLLLLLHELNIFKAKMNHRPTPTITFSYYSSSSNHPLITRKVLT 60

Query: 61  NKVDFTPFVHHRGTNRPANHSHPTTDDN-------DDIDPRYGVEKRRVPTGPNPLHH 102
           +KVDFTPF  HR  N+P  HSHP TD N        DIDPRYGVEKRRVPTGPNPLHH
Sbjct: 61  SKVDFTPFFRHRHPNQPRKHSHP-TDTNVVDEPAPSDIDPRYGVEKRRVPTGPNPLHH 117

[Close]
BLAST of CmoCh15G014950 vs. NCBI nr
Match: gi|590701118|ref|XP_007046321.1| (Clavata3/esr-related 12, putative [Theobroma cacao])

HSP 1 Score: 96.7 bits (239), Expect = 2.5e-17
Identity = 57/113 (50.44%), Postives = 72/113 (63.72%), Query Frame = 1 

Query: 1   MTFKISHFLF-TLLWISLLLLFLHELNLFKPKFNPKPSPTITFSS-------TRKVLANK 60
           M +K+SH +F T+LW+SLL L LHE + FK K N + + +ITFSS       +RKV+A K
Sbjct: 1   MAWKVSHLVFFTVLWLSLLFLLLHEFHSFKFKINGRQASSITFSSLSRNPLISRKVVAGK 60

Query: 61  VDFTPFVHHRGTNRPANHS----HPTTDDNDDIDPRYGVEKRRVPTGPNPLHH 102
            DFTPF  H    +   HS      +   + +IDPRYGVEKR VPTGPNPLHH
Sbjct: 61  FDFTPFQKHHQQEQQDKHSPDMKRQSQAADTEIDPRYGVEKRLVPTGPNPLHH 113

[Close]
BLAST of CmoCh15G014950 vs. NCBI nr
Match: gi|567890451|ref|XP_006437746.1| (hypothetical protein CICLE_v10033717mg [Citrus clementina])

HSP 1 Score: 88.6 bits (218), Expect = 6.9e-15
Identity = 57/124 (45.97%), Postives = 66/124 (53.23%), Query Frame = 1 

Query: 1   MTFKISHFLFTLLWISLLLLFLHELNLFKPKFNP--KPSPTITFSST------------R 60
           M  + SH +F  LW+SLLL   HEL  FK K N   K S T T S+T            R
Sbjct: 1   MALRFSHLIFITLWLSLLLFLFHELYNFKSKINTNTKQSITTTTSNTIHYSLSKYPLINR 60

Query: 61  KVLANKVDFTPFVHHRGTNRPANHSHP---------TTDDNDDIDPRYGVEKRRVPTGPN 102
           KVLA+K DFTPF  H   + P+    P             + +IDPRYGVEKR VPTGPN
Sbjct: 61  KVLASKFDFTPFQKHHEKSSPSQELQPKDHHQPAPAADHGSAEIDPRYGVEKRLVPTGPN 120

[Close]
BLAST of CmoCh15G014950 vs. NCBI nr
Match: gi|593686236|ref|XP_007143789.1| (hypothetical protein PHAVU_007G101800g [Phaseolus vulgaris])

HSP 1 Score: 87.8 bits (216), Expect = 1.2e-14
Identity = 58/110 (52.73%), Postives = 66/110 (60.00%), Query Frame = 1 

Query: 1   MTFKISHFLFTLLWISLLLLFLHELNLFKPKFNPKPS--PTITFSST------RKVLANK 60
           M FKIS  +  LL +SLLLL  HE    K K N   +  PT + SS+      RK LA K
Sbjct: 1   MAFKISQAVHILLLMSLLLLVFHEYYNLKSKINKNHTTQPTHSISSSHHLLVGRKFLATK 60

Query: 61  VDFTPFV-HHRGTNRPANHSHPTTDDNDDIDPRYGVEKRRVPTGPNPLHH 102
            DF+PF  HH   ++P    HP   D D IDPRYGVEKRRVPTGPNPLHH
Sbjct: 61  FDFSPFFKHHHKHHQPGVAVHPDPSDTD-IDPRYGVEKRRVPTGPNPLHH 109

[Close]
BLAST of CmoCh15G014950 vs. NCBI nr
Match: gi|1021565090|ref|XP_016173912.1| (PREDICTED: CLAVATA3/ESR (CLE)-related protein 12, partial [Arachis ipaensis])

HSP 1 Score: 86.7 bits (213), Expect = 2.6e-14
Identity = 57/108 (52.78%), Postives = 66/108 (61.11%), Query Frame = 1 

Query: 1   MTFKISHFLFTLLWISLLLLFL-HELNLFKPKFN----PKPSPTITFSSTRKVL-ANKVD 60
           MT KIS  L  LLW+SL+L  L HE      K N    PK      F++ RKVL A+K D
Sbjct: 4   MTLKISQLLHILLWLSLILFLLFHEYCNLNSKINKPTNPKNHHHHPFNNGRKVLLASKFD 63

Query: 61  FTPFVHHRGTNRPANHSHPTTDDND-DIDPRYGVEKRRVPTGPNPLHH 102
           F+PF +H        H HP  D +D +IDPRYGVEKRRVPTGPNPLHH
Sbjct: 64  FSPFFNHHH-----RHKHPPPDPSDTEIDPRYGVEKRRVPTGPNPLHH 106

The following BLAST results are available for this feature:
BLAST of CmoCh15G014950 vs. Swiss-Prot
Match NameE-valueIdentityDescription
CLE12_ARATH1.5e-1445.54CLAVATA3/ESR (CLE)-related protein 12 OS=Arabidopsis thaliana GN=CLE12 PE=2 SV=1[more]
CLE13_ARATH1.1e-1247.22CLAVATA3/ESR (CLE)-related protein 13 OS=Arabidopsis thaliana GN=CLE13 PE=2 SV=1[more]
BLAST of CmoCh15G014950 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KPQ3_CUCSA9.6e-3266.95Uncharacterized protein OS=Cucumis sativus GN=Csa_5G577440 PE=4 SV=1[more]
A0A061EC34_THECC1.8e-1750.44Clavata3/esr-related 12, putative OS=Theobroma cacao GN=TCM_011877 PE=4 SV=1[more]
V4TMC3_9ROSI4.8e-1545.97Uncharacterized protein OS=Citrus clementina GN=CICLE_v10033717mg PE=4 SV=1[more]
V7BG00_PHAVU8.2e-1552.73Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_007G101800g PE=4 SV=1[more]
A5B735_VITVI3.1e-1447.86Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_020013 PE=4 SV=1[more]
BLAST of CmoCh15G014950 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G68795.18.6e-1645.54 CLAVATA3/ESR-RELATED 12[more]
AT1G73965.16.2e-1447.22 CLAVATA3/ESR-RELATED 13[more]
BLAST of CmoCh15G014950 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700196376|gb|KGN51553.1|1.4e-3166.95hypothetical protein Csa_5G577440 [Cucumis sativus][more]
gi|590701118|ref|XP_007046321.1|2.5e-1750.44Clavata3/esr-related 12, putative [Theobroma cacao][more]
gi|567890451|ref|XP_006437746.1|6.9e-1545.97hypothetical protein CICLE_v10033717mg [Citrus clementina][more]
gi|593686236|ref|XP_007143789.1|1.2e-1452.73hypothetical protein PHAVU_007G101800g [Phaseolus vulgaris][more]
gi|1021565090|ref|XP_016173912.1|2.6e-1452.78PREDICTED: CLAVATA3/ESR (CLE)-related protein 12, partial [Arachis ipaensis][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh15G014950.1CmoCh15G014950.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR34359FAMILY NOT NAMEDcoord: 1..101
score: 3.8
NoneNo IPR availablePANTHERPTHR34359:SF1CLAVATA3/ESR (CLE)-RELATED PROTEIN 11-RELATEDcoord: 1..101
score: 3.8

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh15G014950Cla002321Watermelon (97103) v1cmowmB264
CmoCh15G014950MELO3C005357Melon (DHL92) v3.5.1cmomeB244
CmoCh15G014950ClCG01G005730Watermelon (Charleston Gray)cmowcgB244
CmoCh15G014950Lsi09G006080Bottle gourd (USVL1VR-Ls)cmolsiB248
CmoCh15G014950MELO3C005357.2Melon (DHL92) v3.6.1cmomedB277
CmoCh15G014950Cla97C01G006000Watermelon (97103) v2cmowmbB267
CmoCh15G014950Bhi12G000711Wax gourdcmowgoB0364
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh15G014950Cucurbita maxima (Rimu)cmacmoB287
CmoCh15G014950Cucurbita pepo (Zucchini)cmocpeB269
CmoCh15G014950Silver-seed gourdcarcmoB1004