CmoCh04G019440 (gene) Cucurbita moschata (Rifu)

NameCmoCh04G019440
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionUnknown protein
LocationCmo_Chr04 : 9931340 .. 9932290 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATAGTTTTTTTGTTTAAGCACTAGAAATGATTGTATAATTTCATAAATGCCCGCATGGTAATGTGAGAGATTGAGAAACAATGGCACATTCACTATCTTCAATATCCGCCACTGCTAATGCCACAGCCGCCAGATTCAGCAACCCACGATGTTCCTCCTGTCTCAGGCTTCCAAATCTGCAGGCTCGCAGCCAAGCGTGCAATCAAACTGCACGTAGCCATCTCATCTCCCGCAGGTACAACCATTTGTTTCCTATCACTGTGCATCCAATGCGACTATCTGTTAGCCGTACTAGTCTCATTACTTGAATATATCGCAACAGTTTTTAGATTCAATGATGGTCTAACACGACAAATTCTGTGTTCAAATTCCTCTTCAAATTGCAGGAACGCTGCATTGATCTTGACAGGGGCAATCCTAGGACTGAATAATGTGGTTGTCCAGAGTGCAGAGGCGGCTGCCAGGAGGCCGCCGCCACCTCCCCCGCAAGAGAAGAAGGACCCCAATCTGAGTGGAGTTCAGGCAAAAGTGCTAGCTAGCAGAAAGAGGAAGGAAGCCATGAAAGAAGCTATGGCCAAGCTAAGAGAGAGAGGGAAGGCTGTTGACCAGCCACCTCCTGAATAATTTCTCTGAAACATAAAACACTTTTTGATGCTTTGCCTGTCTCCCTTCGGATAGTATGTTAGTCTACCTGAATAAAGAGTGCATATTGTATTAACAACTCCAAACAATTGTTATTCGTTTCATGTGATTAAGGCTATGACCTTGGATAGGATGTGTTCTATAGATTGTACTGAGTTCTAAGTGAAGGTCATGTGATTGAGATTATTCTAAGTTCGGTTTTTCAGATGGAATTAATTTCTGAATTCTATCATGAAAATCAAATCACTGAAATGATGAAGAAGAATCACTTACTATATAGAAATGGCATTACGAATATCATTCCTTTTC

mRNA sequence

ATAGTTTTTTTGTTTAAGCACTAGAAATGATTGTATAATTTCATAAATGCCCGCATGGTAATGTGAGAGATTGAGAAACAATGGCACATTCACTATCTTCAATATCCGCCACTGCTAATGCCACAGCCGCCAGATTCAGCAACCCACGATGTTCCTCCTGTCTCAGGCTTCCAAATCTGCAGGCTCGCAGCCAAGCGTGCAATCAAACTGCACGTAGCCATCTCATCTCCCGCAGGAACGCTGCATTGATCTTGACAGGGGCAATCCTAGGACTGAATAATGTGGTTGTCCAGAGTGCAGAGGCGGCTGCCAGGAGGCCGCCGCCACCTCCCCCGCAAGAGAAGAAGGACCCCAATCTGAGTGGAGTTCAGGCAAAAGTGCTAGCTAGCAGAAAGAGGAAGGAAGCCATGAAAGAAGCTATGGCCAAGCTAAGAGAGAGAGGGAAGGCTGTTGACCAGCCACCTCCTGAATAATTTCTCTGAAACATAAAACACTTTTTGATGCTTTGCCTGTCTCCCTTCGGATAGTATGTTAGTCTACCTGAATAAAGAGTGCATATTGTATTAACAACTCCAAACAATTGTTATTCGTTTCATGTGATTAAGGCTATGACCTTGGATAGGATGTGTTCTATAGATTGTACTGAGTTCTAAGTGAAGGTCATGTGATTGAGATTATTCTAAGTTCGGTTTTTCAGATGGAATTAATTTCTGAATTCTATCATGAAAATCAAATCACTGAAATGATGAAGAAGAATCACTTACTATATAGAAATGGCATTACGAATATCATTCCTTTTC

Coding sequence (CDS)

ATGGCACATTCACTATCTTCAATATCCGCCACTGCTAATGCCACAGCCGCCAGATTCAGCAACCCACGATGTTCCTCCTGTCTCAGGCTTCCAAATCTGCAGGCTCGCAGCCAAGCGTGCAATCAAACTGCACGTAGCCATCTCATCTCCCGCAGGAACGCTGCATTGATCTTGACAGGGGCAATCCTAGGACTGAATAATGTGGTTGTCCAGAGTGCAGAGGCGGCTGCCAGGAGGCCGCCGCCACCTCCCCCGCAAGAGAAGAAGGACCCCAATCTGAGTGGAGTTCAGGCAAAAGTGCTAGCTAGCAGAAAGAGGAAGGAAGCCATGAAAGAAGCTATGGCCAAGCTAAGAGAGAGAGGGAAGGCTGTTGACCAGCCACCTCCTGAATAA
BLAST of CmoCh04G019440 vs. TrEMBL
Match: A0A0A0KPU5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G588750 PE=4 SV=1)

HSP 1 Score: 167.2 bits (422), Expect = 1.4e-38
Identity = 101/135 (74.81%), Postives = 111/135 (82.22%), Query Frame = 1

Query: 1   MAHSLSSISATANATAA-----RFSNPRCSSCLRLPNLQARSQACNQTARSHLISRRNAA 60
           MAHSLSSISATAN TA      RFSN +CS   RLPN QA S ACN+T  ++LISRRN A
Sbjct: 1   MAHSLSSISATANVTATLSRSIRFSNTQCSY-QRLPNPQACSNACNETQHTNLISRRNTA 60

Query: 61  LILTGAILGLNNVVVQSAEAAARRPPPPPPQEKKDPNLSGVQAKVLASRKRKEAMKEAMA 120
           LILTG +LG+N VV + AEAAARRPPPPPPQEKKDPNLSGVQAKVLAS+KRKEA+KEA A
Sbjct: 61  LILTGVMLGVN-VVDRRAEAAARRPPPPPPQEKKDPNLSGVQAKVLASKKRKEALKEATA 120

Query: 121 KLRERGKAVDQPPPE 131
           KLR +GK VDQPPPE
Sbjct: 121 KLRAKGKPVDQPPPE 133

BLAST of CmoCh04G019440 vs. TrEMBL
Match: V4TPT1_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10022842mg PE=4 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 9.8e-21
Identity = 69/128 (53.91%), Postives = 88/128 (68.75%), Query Frame = 1

Query: 1   MAHSLSSISATANATAARFSNPRCSS-CLRLPNLQARSQACNQTARSHLISRRNAALILT 60
           MAHSL++   T +   +  SN + ++  +    + A  Q   Q     LI RRN AL L 
Sbjct: 1   MAHSLTTAPPTTSTPISTKSNKKLNAPSVCFHRVWACDQHYEQAPDDKLIHRRNVALGLA 60

Query: 61  GAILGLNNVVVQSAEAAARRPPPPPPQEKKDPNLSGVQAKVLASRKRKEAMKEAMAKLRE 120
           GA+LGLN    ++A AAARRPPPP P+EKKDPN+SGVQAKVLAS+KRKEAMK+A+AKLRE
Sbjct: 61  GAVLGLNVTGDRNANAAARRPPPPQPEEKKDPNVSGVQAKVLASKKRKEAMKQAVAKLRE 120

Query: 121 RGKAVDQP 128
           +GK V+ P
Sbjct: 121 KGKPVNGP 128

BLAST of CmoCh04G019440 vs. TrEMBL
Match: A0A067DSG4_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g032923mg PE=4 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 1.7e-20
Identity = 71/132 (53.79%), Postives = 92/132 (69.70%), Query Frame = 1

Query: 1   MAHSLSSISATANATAARFSNPRCSSCLRLPNLQA-RSQACNQTARS----HLISRRNAA 60
           MAHSL++   T +   +  SN +    L +P++   R  AC+Q ++      LI RRN  
Sbjct: 1   MAHSLTTAPPTTSTPISTKSNKK----LNVPSVCFHRVWACDQHSKQALDDKLIHRRNVT 60

Query: 61  LILTGAILGLNNVVVQSAEAAARRPPPPPPQEKKDPNLSGVQAKVLASRKRKEAMKEAMA 120
           L L GA+LGLN    ++A AAARRPPPP P+EKKDPN+SGVQAKVLAS+KRKEAMK+A+A
Sbjct: 61  LGLAGAVLGLNVSGDRNANAAARRPPPPQPEEKKDPNVSGVQAKVLASKKRKEAMKQAVA 120

Query: 121 KLRERGKAVDQP 128
           KLRE+GK V+ P
Sbjct: 121 KLREKGKPVNGP 128

BLAST of CmoCh04G019440 vs. TrEMBL
Match: D7T2H4_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_05s0094g00880 PE=4 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 6.4e-20
Identity = 63/90 (70.00%), Postives = 73/90 (81.11%), Query Frame = 1

Query: 38  QACNQTARSHLISRRNAALILTGAILGLNNVVVQSAEAAARRPPPPPPQEKKDPNLSGVQ 97
           Q+  Q     LI RRN +L L GA+LGL++   QSA AA RRPPPPPPQEK+DPNLSGVQ
Sbjct: 40  QSSAQALDDRLIHRRNISLGLLGAVLGLSSGN-QSARAA-RRPPPPPPQEKQDPNLSGVQ 99

Query: 98  AKVLASRKRKEAMKEAMAKLRERGKAVDQP 128
           AKVLAS+KRKEAMKE MAKLRE+GKA++QP
Sbjct: 100 AKVLASKKRKEAMKETMAKLREQGKAINQP 127

BLAST of CmoCh04G019440 vs. TrEMBL
Match: A0A0B0NRC8_GOSAR (DNA translocase FtsK OS=Gossypium arboreum GN=F383_17943 PE=4 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 1.9e-19
Identity = 74/134 (55.22%), Postives = 88/134 (65.67%), Query Frame = 1

Query: 1   MAHSLSSISATANATAARFSNPRCSSC--LRLPNLQARSQACNQTARSHLISRRNAALIL 60
           MAHSL+ + ATA    A+ SN   S    LRL  + A  Q  +      L+ RR   L L
Sbjct: 1   MAHSLTPVPATAITPIAK-SNKLASHIPTLRLQTVSASYQTPHHVLDDKLVHRRAVTLSL 60

Query: 61  TGAILGLNNVVVQSAEAAARRPPPPPPQEKKDPNLSGVQAKVLASRKRKEAMKEAMAKLR 120
            GA+L LN V  Q    AARRPPPPPP+EKKDP++SGVQAKVLAS+KRKEAMK+AMAK+R
Sbjct: 61  AGAMLSLN-VGDQRQANAARRPPPPPPEEKKDPSVSGVQAKVLASKKRKEAMKQAMAKMR 120

Query: 121 ERGKAVD--QPPPE 131
           E+GK VD   PP E
Sbjct: 121 EKGKPVDGTSPPSE 132

BLAST of CmoCh04G019440 vs. TAIR10
Match: AT1G21500.1 (AT1G21500.1 unknown protein)

HSP 1 Score: 81.6 bits (200), Expect = 3.8e-16
Identity = 61/130 (46.92%), Postives = 79/130 (60.77%), Query Frame = 1

Query: 1   MAHSLSSISATANATAARFSNPRCSSCLRLPNLQARSQACNQTARSHLISRRNAALILTG 60
           +AHSL  +S  A+A  AR S+P   S  + P +       N         RR   + L G
Sbjct: 2   VAHSLVPLSPAAHA--ARLSSPSPRSLPQAPPVVLAVPPIN---------RRTILVGLGG 61

Query: 61  AILGLNNVVV-QSAEAAARRPPPPPPQEKKDPNLSGVQAKVLASRKRKEAMKEAMAKLRE 120
           A+   N +   + A AAARRPPPPPP+EKKDP ++GVQAKVLAS+KRKE MK ++AKLRE
Sbjct: 62  ALWSWNALAAKEEAMAAARRPPPPPPKEKKDPTVTGVQAKVLASKKRKEEMKASIAKLRE 120

Query: 121 RGKAVDQPPP 130
           +GK V +  P
Sbjct: 122 KGKPVVEAKP 120

BLAST of CmoCh04G019440 vs. NCBI nr
Match: gi|449435109|ref|XP_004135338.1| (PREDICTED: uncharacterized protein LOC101217329 [Cucumis sativus])

HSP 1 Score: 167.2 bits (422), Expect = 2.0e-38
Identity = 101/135 (74.81%), Postives = 111/135 (82.22%), Query Frame = 1

Query: 1   MAHSLSSISATANATAA-----RFSNPRCSSCLRLPNLQARSQACNQTARSHLISRRNAA 60
           MAHSLSSISATAN TA      RFSN +CS   RLPN QA S ACN+T  ++LISRRN A
Sbjct: 1   MAHSLSSISATANVTATLSRSIRFSNTQCSY-QRLPNPQACSNACNETQHTNLISRRNTA 60

Query: 61  LILTGAILGLNNVVVQSAEAAARRPPPPPPQEKKDPNLSGVQAKVLASRKRKEAMKEAMA 120
           LILTG +LG+N VV + AEAAARRPPPPPPQEKKDPNLSGVQAKVLAS+KRKEA+KEA A
Sbjct: 61  LILTGVMLGVN-VVDRRAEAAARRPPPPPPQEKKDPNLSGVQAKVLASKKRKEALKEATA 120

Query: 121 KLRERGKAVDQPPPE 131
           KLR +GK VDQPPPE
Sbjct: 121 KLRAKGKPVDQPPPE 133

BLAST of CmoCh04G019440 vs. NCBI nr
Match: gi|659090434|ref|XP_008446014.1| (PREDICTED: uncharacterized protein LOC103488868 [Cucumis melo])

HSP 1 Score: 165.2 bits (417), Expect = 7.4e-38
Identity = 102/135 (75.56%), Postives = 112/135 (82.96%), Query Frame = 1

Query: 1   MAHSLSSISATANATAA-----RFSNPRCSSCLRLPNLQARSQACNQTARSHLISRRNAA 60
           MAHSLSSISATAN TA      RFSN +CS   RLPN QARS A NQ+  S+LISRRN A
Sbjct: 1   MAHSLSSISATANVTATISRSIRFSNTQCSYH-RLPNPQARSNARNQSEPSNLISRRNTA 60

Query: 61  LILTGAILGLNNVVVQSAEAAARRPPPPPPQEKKDPNLSGVQAKVLASRKRKEAMKEAMA 120
           LILTG +LG+N VV +SAEAAARRPPPPPP+EKKDPNLSGVQAKVLAS+KRKEA+KEA A
Sbjct: 61  LILTGVMLGVN-VVDRSAEAAARRPPPPPPKEKKDPNLSGVQAKVLASKKRKEALKEATA 120

Query: 121 KLRERGKAVDQPPPE 131
           KLR +GK VDQPPPE
Sbjct: 121 KLRAKGKPVDQPPPE 133

BLAST of CmoCh04G019440 vs. NCBI nr
Match: gi|567899408|ref|XP_006442192.1| (hypothetical protein CICLE_v10022842mg [Citrus clementina])

HSP 1 Score: 107.8 bits (268), Expect = 1.4e-20
Identity = 69/128 (53.91%), Postives = 88/128 (68.75%), Query Frame = 1

Query: 1   MAHSLSSISATANATAARFSNPRCSS-CLRLPNLQARSQACNQTARSHLISRRNAALILT 60
           MAHSL++   T +   +  SN + ++  +    + A  Q   Q     LI RRN AL L 
Sbjct: 1   MAHSLTTAPPTTSTPISTKSNKKLNAPSVCFHRVWACDQHYEQAPDDKLIHRRNVALGLA 60

Query: 61  GAILGLNNVVVQSAEAAARRPPPPPPQEKKDPNLSGVQAKVLASRKRKEAMKEAMAKLRE 120
           GA+LGLN    ++A AAARRPPPP P+EKKDPN+SGVQAKVLAS+KRKEAMK+A+AKLRE
Sbjct: 61  GAVLGLNVTGDRNANAAARRPPPPQPEEKKDPNVSGVQAKVLASKKRKEAMKQAVAKLRE 120

Query: 121 RGKAVDQP 128
           +GK V+ P
Sbjct: 121 KGKPVNGP 128

BLAST of CmoCh04G019440 vs. NCBI nr
Match: gi|568879703|ref|XP_006492785.1| (PREDICTED: uncharacterized protein LOC102627820 [Citrus sinensis])

HSP 1 Score: 107.1 bits (266), Expect = 2.4e-20
Identity = 71/132 (53.79%), Postives = 92/132 (69.70%), Query Frame = 1

Query: 1   MAHSLSSISATANATAARFSNPRCSSCLRLPNLQA-RSQACNQTARS----HLISRRNAA 60
           MAHSL++   T +   +  SN +    L +P++   R  AC+Q ++      LI RRN  
Sbjct: 1   MAHSLTTAPPTTSTPISTKSNKK----LNVPSVCFHRVWACDQHSKQALDDKLIHRRNVT 60

Query: 61  LILTGAILGLNNVVVQSAEAAARRPPPPPPQEKKDPNLSGVQAKVLASRKRKEAMKEAMA 120
           L L GA+LGLN    ++A AAARRPPPP P+EKKDPN+SGVQAKVLAS+KRKEAMK+A+A
Sbjct: 61  LGLAGAVLGLNVSGDRNANAAARRPPPPQPEEKKDPNVSGVQAKVLASKKRKEAMKQAVA 120

Query: 121 KLRERGKAVDQP 128
           KLRE+GK V+ P
Sbjct: 121 KLREKGKPVNGP 128

BLAST of CmoCh04G019440 vs. NCBI nr
Match: gi|225434148|ref|XP_002277983.1| (PREDICTED: uncharacterized protein LOC100252564 [Vitis vinifera])

HSP 1 Score: 105.1 bits (261), Expect = 9.1e-20
Identity = 63/90 (70.00%), Postives = 73/90 (81.11%), Query Frame = 1

Query: 38  QACNQTARSHLISRRNAALILTGAILGLNNVVVQSAEAAARRPPPPPPQEKKDPNLSGVQ 97
           Q+  Q     LI RRN +L L GA+LGL++   QSA AA RRPPPPPPQEK+DPNLSGVQ
Sbjct: 40  QSSAQALDDRLIHRRNISLGLLGAVLGLSSGN-QSARAA-RRPPPPPPQEKQDPNLSGVQ 99

Query: 98  AKVLASRKRKEAMKEAMAKLRERGKAVDQP 128
           AKVLAS+KRKEAMKE MAKLRE+GKA++QP
Sbjct: 100 AKVLASKKRKEAMKETMAKLREQGKAINQP 127

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KPU5_CUCSA1.4e-3874.81Uncharacterized protein OS=Cucumis sativus GN=Csa_5G588750 PE=4 SV=1[more]
V4TPT1_9ROSI9.8e-2153.91Uncharacterized protein OS=Citrus clementina GN=CICLE_v10022842mg PE=4 SV=1[more]
A0A067DSG4_CITSI1.7e-2053.79Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g032923mg PE=4 SV=1[more]
D7T2H4_VITVI6.4e-2070.00Putative uncharacterized protein OS=Vitis vinifera GN=VIT_05s0094g00880 PE=4 SV=... [more]
A0A0B0NRC8_GOSAR1.9e-1955.22DNA translocase FtsK OS=Gossypium arboreum GN=F383_17943 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT1G21500.13.8e-1646.92 unknown protein[more]
Match NameE-valueIdentityDescription
gi|449435109|ref|XP_004135338.1|2.0e-3874.81PREDICTED: uncharacterized protein LOC101217329 [Cucumis sativus][more]
gi|659090434|ref|XP_008446014.1|7.4e-3875.56PREDICTED: uncharacterized protein LOC103488868 [Cucumis melo][more]
gi|567899408|ref|XP_006442192.1|1.4e-2053.91hypothetical protein CICLE_v10022842mg [Citrus clementina][more]
gi|568879703|ref|XP_006492785.1|2.4e-2053.79PREDICTED: uncharacterized protein LOC102627820 [Citrus sinensis][more]
gi|225434148|ref|XP_002277983.1|9.1e-2070.00PREDICTED: uncharacterized protein LOC100252564 [Vitis vinifera][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
cellular_component GO:0009534 chloroplast thylakoid
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh04G019440.1CmoCh04G019440.1mRNA


Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableunknownCoilCoilcoord: 100..120
scor
NoneNo IPR availablePANTHERPTHR37182FAMILY NOT NAMEDcoord: 2..130
score: 4.6
NoneNo IPR availablePANTHERPTHR37182:SF1F24J8.11 PROTEINcoord: 2..130
score: 4.6