Cucsa.075880 (gene) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.075880
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	DNA translocase FtsK
Location	scaffold00789 : 436692 .. 437494 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AGCTATATTGCCTTATCCACAACCGACCAATAGATTTCAATAACCATTCTCTAGAGAACCCCTATGCGATATCCTCTTTGAGAGTCTGTTGTTTACACATAAGAAATGTATTGCACAAAAGAAGAGAAAAAAAAGGTCTCTTCTATTCTAATATCATAAACCTCTCATATGGTGATGTGAGATTGAGAAACAATGGCACATTCACTATCTTCTATATCGGCTACAGCTAATGTCACAGCTACTCTATCGCGCTCTATCCGATTCAGCAACACACAATGTTCTTATCAAAGGCTTCCAAATCCACAAGCTTGCAGTAACGCTTGCAATGAAACTCAACATACCAATCTCATCTCACGCAGGTACAAGTCTAATACAAGTGAACATTATATTATCAACGATAGATTTTGAGTTGGTTTTAAATTTCGTAATATCTACAAATTCTTTTGCATAATTGCTATTAGATGCAATTGACCCTAATAATAAGTTACATGCATTATAAATTTTTTGTGTTCAAATTCCTCTAAGATCATTAGCCACACATCCAATGTGGTGTGGCTCAAAATTGCAGAAACACTGCCTTGATCCTGACAGGGGTAATGCTGGGTGTGAATGTGGTTGACCGGAGGGCGGAGGCAGCGGCAAGAAGACCGCCACCACCTCCACCGCAAGAGAAGAAGGACCCCAATCTGAGTGGGGTTCAGGCAAAAGTGCTAGCTAGTAAAAAGAGAAAGGAAGCCCTTAAAGAAGCTACAGCTAAGCTAAGAGCGAAAGGGAAACCTGTTGACCAGCCACCACCTGAATAA

mRNA sequence

AGCTATATTGCCTTATCCACAACCGACCAATAGATTTCAATAACCATTCTCTAGAGAACCCCTATGCGATATCCTCTTTGAGAGTCTGTTGTTTACACATAAGAAATGTATTGCACAAAAGAAGAGAAAAAAAAGGTCTCTTCTATTCTAATATCATAAACCTCTCATATGGGGTAATGCTGGGTGTGAATGTGGTTGACCGGAGGGCGGAGGCAGCGGCAAGAAGACCGCCACCACCTCCACCGCAAGAGAAGAAGGACCCCAATCTGAGTGGGGTTCAGGCAAAAGTGCTAGCTAGTAAAAAGAGAAAGGAAGCCCTTAAAGAAGCTACAGCTAAGCTAAGAGCGAAAGGGAAACCTGTTGACCAGCCACCACCTGAATAA

Coding sequence (CDS)

AGCTATATTGCCTTATCCACAACCGACCAATAGATTTCAATAACCATTCTCTAGAGAACCCCTATGCGATATCCTCTTTGAGAGTCTGTTGTTTACACATAAGAAATGTATTGCACAAAAGAAGAGAAAAAAAAGGTCTCTTCTATTCTAATATCATAAACCTCTCATATGGGGTAATGCTGGGTGTGAATGTGGTTGACCGGAGGGCGGAGGCAGCGGCAAGAAGACCGCCACCACCTCCACCGCAAGAGAAGAAGGACCCCAATCTGAGTGGGGTTCAGGCAAAAGTGCTAGCTAGTAAAAAGAGAAAGGAAGCCCTTAAAGAAGCTACAGCTAAGCTAAGAGCGAAAGGGAAACCTGTTGACCAGCCACCACCTGAATAA

Protein sequence

LYCLIHNRPIDFNNHSLENPYAISSLRVCCLHIRNVLHKRREKKGLFYSNIINLSYGVMLGVNVVDRRAEAAARRPPPPPPQEKKDPNLSGVQAKVLASKKRKEALKEATAKLRAKGKPVDQPPPE*

Homology

[Close]

BLAST of Cucsa.075880 vs. TrEMBL
Match: A0A0A0KPU5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G588750 PE=4 SV=1)

HSP 1 Score: 142.9 bits (359), Expect = 2.7e-31
Identity = 81/125 (64.80%), Postives = 88/125 (70.40%), Query Frame = 1


Query: 7   NRPIDFNN-----HSLENPYAISSLRVCCLHIRNVLHKRREKKGLFYSNIINLSYGVMLG 66
           +R I F+N       L NP A S          N  ++ +    +   N   +  GVMLG
Sbjct: 19  SRSIRFSNTQCSYQRLPNPQACS----------NACNETQHTNLISRRNTALILTGVMLG 78

Query: 67  VNVVDRRAEAAARRPPPPPPQEKKDPNLSGVQAKVLASKKRKEALKEATAKLRAKGKPVD 126
           VNVVDRRAEAAARRPPPPPPQEKKDPNLSGVQAKVLASKKRKEALKEATAKLRAKGKPVD
Sbjct: 79  VNVVDRRAEAAARRPPPPPPQEKKDPNLSGVQAKVLASKKRKEALKEATAKLRAKGKPVD 133

[Close]

BLAST of Cucsa.075880 vs. TrEMBL
Match: A0A0B0NRC8_GOSAR (DNA translocase FtsK OS=Gossypium arboreum GN=F383_17943 PE=4 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 4.8e-20
Identity = 55/84 (65.48%), Postives = 65/84 (77.38%), Query Frame = 1


Query: 46  LFYSNIINLSY-GVMLGVNVVDRRAEAAARRPPPPPPQEKKDPNLSGVQAKVLASKKRKE 105
           L +   + LS  G ML +NV D+R   AARRPPPPPP+EKKDP++SGVQAKVLASKKRKE
Sbjct: 49  LVHRRAVTLSLAGAMLSLNVGDQRQANAARRPPPPPPEEKKDPSVSGVQAKVLASKKRKE 108

Query: 106 ALKEATAKLRAKGKPVD--QPPPE 127
           A+K+A AK+R KGKPVD   PP E
Sbjct: 109 AMKQAMAKMREKGKPVDGTSPPSE 132

[Close]

BLAST of Cucsa.075880 vs. TrEMBL
Match: A0A0D2T7H3_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_011G133600 PE=4 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 4.8e-20
Identity = 55/84 (65.48%), Postives = 65/84 (77.38%), Query Frame = 1


Query: 46  LFYSNIINLSY-GVMLGVNVVDRRAEAAARRPPPPPPQEKKDPNLSGVQAKVLASKKRKE 105
           L +   + LS  G ML +NV D+R   AARRPPPPPP+EKKDP++SGVQAKVLASKKRKE
Sbjct: 49  LVHRRTVTLSLAGAMLSLNVGDQRQANAARRPPPPPPEEKKDPSVSGVQAKVLASKKRKE 108

Query: 106 ALKEATAKLRAKGKPVD--QPPPE 127
           A+K+A AK+R KGKPVD   PP E
Sbjct: 109 AMKQAMAKMREKGKPVDGTSPPSE 132

[Close]

BLAST of Cucsa.075880 vs. TrEMBL
Match: V4TPT1_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10022842mg PE=4 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 6.2e-20
Identity = 56/89 (62.92%), Postives = 66/89 (74.16%), Query Frame = 1


Query: 36  VLHKRREKKGLFYSNIINLSYGVMLGVNVV-DRRAEAAARRPPPPPPQEKKDPNLSGVQA 95
           ++H+R    GL          G +LG+NV  DR A AAARRPPPP P+EKKDPN+SGVQA
Sbjct: 49  LIHRRNVALGLA---------GAVLGLNVTGDRNANAAARRPPPPQPEEKKDPNVSGVQA 108

Query: 96  KVLASKKRKEALKEATAKLRAKGKPVDQP 124
           KVLASKKRKEA+K+A AKLR KGKPV+ P
Sbjct: 109 KVLASKKRKEAMKQAVAKLREKGKPVNGP 128

[Close]

BLAST of Cucsa.075880 vs. TrEMBL
Match: A0A067DSG4_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g032923mg PE=4 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 1.1e-19
Identity = 56/89 (62.92%), Postives = 66/89 (74.16%), Query Frame = 1


Query: 36  VLHKRREKKGLFYSNIINLSYGVMLGVNVV-DRRAEAAARRPPPPPPQEKKDPNLSGVQA 95
           ++H+R    GL          G +LG+NV  DR A AAARRPPPP P+EKKDPN+SGVQA
Sbjct: 49  LIHRRNVTLGLA---------GAVLGLNVSGDRNANAAARRPPPPQPEEKKDPNVSGVQA 108

Query: 96  KVLASKKRKEALKEATAKLRAKGKPVDQP 124
           KVLASKKRKEA+K+A AKLR KGKPV+ P
Sbjct: 109 KVLASKKRKEAMKQAVAKLREKGKPVNGP 128

[Close]

BLAST of Cucsa.075880 vs. TAIR10
Match: AT1G21500.1 (AT1G21500.1 unknown protein)

HSP 1 Score: 87.4 bits (215), Expect = 6.8e-18
Identity = 42/57 (73.68%), Postives = 48/57 (84.21%), Query Frame = 1


Query: 69  AEAAARRPPPPPPQEKKDPNLSGVQAKVLASKKRKEALKEATAKLRAKGKPVDQPPP 126
           A AAARRPPPPPP+EKKDP ++GVQAKVLASKKRKE +K + AKLR KGKPV +  P
Sbjct: 64  AMAAARRPPPPPPKEKKDPTVTGVQAKVLASKKRKEEMKASIAKLREKGKPVVEAKP 120

[Close]

BLAST of Cucsa.075880 vs. NCBI nr
Match: gi|449435109|ref|XP_004135338.1| (PREDICTED: uncharacterized protein LOC101217329 [Cucumis sativus])

HSP 1 Score: 142.9 bits (359), Expect = 3.9e-31
Identity = 81/125 (64.80%), Postives = 88/125 (70.40%), Query Frame = 1


Query: 7   NRPIDFNN-----HSLENPYAISSLRVCCLHIRNVLHKRREKKGLFYSNIINLSYGVMLG 66
           +R I F+N       L NP A S          N  ++ +    +   N   +  GVMLG
Sbjct: 19  SRSIRFSNTQCSYQRLPNPQACS----------NACNETQHTNLISRRNTALILTGVMLG 78

Query: 67  VNVVDRRAEAAARRPPPPPPQEKKDPNLSGVQAKVLASKKRKEALKEATAKLRAKGKPVD 126
           VNVVDRRAEAAARRPPPPPPQEKKDPNLSGVQAKVLASKKRKEALKEATAKLRAKGKPVD
Sbjct: 79  VNVVDRRAEAAARRPPPPPPQEKKDPNLSGVQAKVLASKKRKEALKEATAKLRAKGKPVD 133

[Close]

BLAST of Cucsa.075880 vs. NCBI nr
Match: gi|659090434|ref|XP_008446014.1| (PREDICTED: uncharacterized protein LOC103488868 [Cucumis melo])

HSP 1 Score: 141.0 bits (354), Expect = 1.5e-30
Identity = 82/125 (65.60%), Postives = 90/125 (72.00%), Query Frame = 1


Query: 7   NRPIDFNN-----HSLENPYAISSLRVCCLHIRNVLHKRREKKGLFYSNIINLSYGVMLG 66
           +R I F+N     H L NP A S+ R       N++ +R         N   +  GVMLG
Sbjct: 19  SRSIRFSNTQCSYHRLPNPQARSNARNQS-EPSNLISRR---------NTALILTGVMLG 78

Query: 67  VNVVDRRAEAAARRPPPPPPQEKKDPNLSGVQAKVLASKKRKEALKEATAKLRAKGKPVD 126
           VNVVDR AEAAARRPPPPPP+EKKDPNLSGVQAKVLASKKRKEALKEATAKLRAKGKPVD
Sbjct: 79  VNVVDRSAEAAARRPPPPPPKEKKDPNLSGVQAKVLASKKRKEALKEATAKLRAKGKPVD 133

[Close]

BLAST of Cucsa.075880 vs. NCBI nr
Match: gi|823246793|ref|XP_012456073.1| (PREDICTED: uncharacterized protein LOC105777371 [Gossypium raimondii])

HSP 1 Score: 105.5 bits (262), Expect = 6.8e-20
Identity = 55/84 (65.48%), Postives = 65/84 (77.38%), Query Frame = 1


Query: 46  LFYSNIINLSY-GVMLGVNVVDRRAEAAARRPPPPPPQEKKDPNLSGVQAKVLASKKRKE 105
           L +   + LS  G ML +NV D+R   AARRPPPPPP+EKKDP++SGVQAKVLASKKRKE
Sbjct: 49  LVHRRTVTLSLAGAMLSLNVGDQRQANAARRPPPPPPEEKKDPSVSGVQAKVLASKKRKE 108

Query: 106 ALKEATAKLRAKGKPVD--QPPPE 127
           A+K+A AK+R KGKPVD   PP E
Sbjct: 109 AMKQAMAKMREKGKPVDGTSPPSE 132

[Close]

BLAST of Cucsa.075880 vs. NCBI nr
Match: gi|728834886|gb|KHG14329.1| (DNA translocase FtsK [Gossypium arboreum])

HSP 1 Score: 105.5 bits (262), Expect = 6.8e-20
Identity = 55/84 (65.48%), Postives = 65/84 (77.38%), Query Frame = 1


Query: 46  LFYSNIINLSY-GVMLGVNVVDRRAEAAARRPPPPPPQEKKDPNLSGVQAKVLASKKRKE 105
           L +   + LS  G ML +NV D+R   AARRPPPPPP+EKKDP++SGVQAKVLASKKRKE
Sbjct: 49  LVHRRAVTLSLAGAMLSLNVGDQRQANAARRPPPPPPEEKKDPSVSGVQAKVLASKKRKE 108

Query: 106 ALKEATAKLRAKGKPVD--QPPPE 127
           A+K+A AK+R KGKPVD   PP E
Sbjct: 109 AMKQAMAKMREKGKPVDGTSPPSE 132

[Close]

BLAST of Cucsa.075880 vs. NCBI nr
Match: gi|567899408|ref|XP_006442192.1| (hypothetical protein CICLE_v10022842mg [Citrus clementina])

HSP 1 Score: 105.1 bits (261), Expect = 8.9e-20
Identity = 56/89 (62.92%), Postives = 66/89 (74.16%), Query Frame = 1


Query: 36  VLHKRREKKGLFYSNIINLSYGVMLGVNVV-DRRAEAAARRPPPPPPQEKKDPNLSGVQA 95
           ++H+R    GL          G +LG+NV  DR A AAARRPPPP P+EKKDPN+SGVQA
Sbjct: 49  LIHRRNVALGLA---------GAVLGLNVTGDRNANAAARRPPPPQPEEKKDPNVSGVQA 108

Query: 96  KVLASKKRKEALKEATAKLRAKGKPVDQP 124
           KVLASKKRKEA+K+A AKLR KGKPV+ P
Sbjct: 109 KVLASKKRKEAMKQAVAKLREKGKPVNGP 128

The following BLAST results are available for this feature:

BLAST of Cucsa.075880 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KPU5_CUCSA	2.7e-31	64.80	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G588750 PE=4 SV=1	[more]
A0A0B0NRC8_GOSAR	4.8e-20	65.48	DNA translocase FtsK OS=Gossypium arboreum GN=F383_17943 PE=4 SV=1	[more]
A0A0D2T7H3_GOSRA	4.8e-20	65.48	Uncharacterized protein OS=Gossypium raimondii GN=B456_011G133600 PE=4 SV=1	[more]
V4TPT1_9ROSI	6.2e-20	62.92	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10022842mg PE=4 SV=1	[more]
A0A067DSG4_CITSI	1.1e-19	62.92	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g032923mg PE=4 SV=1	[more]

BLAST of Cucsa.075880 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G21500.1	6.8e-18	73.68	unknown protein	[more]

BLAST of Cucsa.075880 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449435109\|ref\|XP_004135338.1\|	3.9e-31	64.80	PREDICTED: uncharacterized protein LOC101217329 [Cucumis sativus]	[more]
gi\|659090434\|ref\|XP_008446014.1\|	1.5e-30	65.60	PREDICTED: uncharacterized protein LOC103488868 [Cucumis melo]	[more]
gi\|823246793\|ref\|XP_012456073.1\|	6.8e-20	65.48	PREDICTED: uncharacterized protein LOC105777371 [Gossypium raimondii]	[more]
gi\|728834886\|gb\|KHG14329.1\|	6.8e-20	65.48	DNA translocase FtsK [Gossypium arboreum]	[more]
gi\|567899408\|ref\|XP_006442192.1\|	8.9e-20	62.92	hypothetical protein CICLE_v10022842mg [Citrus clementina]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0009534	chloroplast thylakoid
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsa.075880.1	Cucsa.075880.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR37182	FAMILY NOT NAMED	coord: 56..126 score: 8.8

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cucsa.075880	Cla022947	Watermelon (97103) v1	cgywmB080
Cucsa.075880	MELO3C011848	Melon (DHL92) v3.5.1	cgymeB077
Cucsa.075880	ClCG11G013470	Watermelon (Charleston Gray)	cgywcgB076
Cucsa.075880	CmaCh04G018490	Cucurbita maxima (Rimu)	cgycmaB0126
Cucsa.075880	CmoCh04G019440	Cucurbita moschata (Rifu)	cgycmoB0123
Cucsa.075880	Lsi04G007030	Bottle gourd (USVL1VR-Ls)	cgylsiB076
Cucsa.075880	Cp4.1LG01g16460	Cucurbita pepo (Zucchini)	cgycpeB0123
Cucsa.075880	MELO3C011848.2	Melon (DHL92) v3.6.1	cgymedB076
Cucsa.075880	CsaV3_5G030090	Cucumber (Chinese Long) v3	cgycucB076
Cucsa.075880	Cla97C11G219400	Watermelon (97103) v2	cgywmbB072
Cucsa.075880	BhiUN916G9	Wax gourd	cgywgoB085
Cucsa.075880	Carg24406	Silver-seed gourd	carcgyB0166

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cucsa.075880	Cucurbita maxima (Rimu)	cgycmaB0123
Cucsa.075880	Cucurbita maxima (Rimu)	cgycmaB0125
Cucsa.075880	Cucurbita moschata (Rifu)	cgycmoB0119
Cucsa.075880	Cucurbita moschata (Rifu)	cgycmoB0120
Cucsa.075880	Wild cucumber (PI 183967)	cgycpiB074
Cucsa.075880	Wild cucumber (PI 183967)	cgycpiB076
Cucsa.075880	Cucumber (Chinese Long) v2	cgycuB073
Cucsa.075880	Cucurbita pepo (Zucchini)	cgycpeB0120
Cucsa.075880	Cucurbita pepo (Zucchini)	cgycpeB0125
Cucsa.075880	Silver-seed gourd	carcgyB0772
Cucsa.075880	Cucumber (Chinese Long) v3	cgycucB077