CmaCh04G018490 (gene) Cucurbita maxima (Rimu)

NameCmaCh04G018490
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionDNA translocase FtsK
LocationCma_Chr04 : 9324022 .. 9324843 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GTTTGATTAAGCACTAGAAATGATTGTATAATTTCCTAAACTCCCGCATGGTAATGTGAGAGATTGAGAAACAATGGCACATTCACTATCTTCAATATCCGCCACTGCTAATGCCACAGCCGCCAGATTCAGCAACCCACGATGTTCCACCTGTCTCAGGCTTCCGAATCTGCAGGCTCGCAGCCACGCGTGCAATCAAACTGCACGTACCCATCTCATCTCCCGCAGGTACAACCATTTGTTTCCTATCACTGTGCATCCAATGCGACTATCTGTTAGTCGTACCAGTCATTACTTGAATATATCGCAACAGTTTTTAGATTCAAGGATGGTCTAACACGAAAAATTCTGTGTTCGAATTCCTCTTCAAATTGCAGGAACGCTGCATTGATCTTGACAGGGGCAATGCTTGGACTGAATAATGTGGTTGTCCAGAGTGCAGAGGCGGCTGCCAGGAGGCCGCCGCCACCTCCCCCGCAAGAGAAGAAGGACCCCAATCTGAGTGGAGTTCAGGCAAAAGTGCTAGCTAGCAGAAAGAGGAAGGAAGCCATGAAAGAAGCTATGGCCAAGCTAAGAGAGAGAGGGAAGGCTGTTGACCAGCCACCTCCTGAATAATTTCTCTGAAACATAAACACTTTTTGATGCTTTGCCTGTCCCTTCGGATTACTAGTCTACCTGAATAAAGAGTGCATATTGTATTAACAACTCCAAACAATTGTTTAAGGCTATGACCTTGGATAGGATGTGTTCTATAGATTGTACTGAGTTCTAAGTGTAAGTCATTTGATTGAGATTATTCTAAATTCGGTTTTTCAGATGGAA

mRNA sequence

GTTTGATTAAGCACTAGAAATGATTGTATAATTTCCTAAACTCCCGCATGGTAATGTGAGAGATTGAGAAACAATGGCACATTCACTATCTTCAATATCCGCCACTGCTAATGCCACAGCCGCCAGATTCAGCAACCCACGATGTTCCACCTGTCTCAGGCTTCCGAATCTGCAGGCTCGCAGCCACGCGTGCAATCAAACTGCACGTACCCATCTCATCTCCCGCAGGAACGCTGCATTGATCTTGACAGGGGCAATGCTTGGACTGAATAATGTGGTTGTCCAGAGTGCAGAGGCGGCTGCCAGGAGGCCGCCGCCACCTCCCCCGCAAGAGAAGAAGGACCCCAATCTGAGTGGAGTTCAGGCAAAAGTGCTAGCTAGCAGAAAGAGGAAGGAAGCCATGAAAGAAGCTATGGCCAAGCTAAGAGAGAGAGGGAAGGCTGTTGACCAGCCACCTCCTGAATAATTTCTCTGAAACATAAACACTTTTTGATGCTTTGCCTGTCCCTTCGGATTACTAGTCTACCTGAATAAAGAGTGCATATTGTATTAACAACTCCAAACAATTGTTTAAGGCTATGACCTTGGATAGGATGTGTTCTATAGATTGTACTGAGTTCTAAGTGTAAGTCATTTGATTGAGATTATTCTAAATTCGGTTTTTCAGATGGAA

Coding sequence (CDS)

ATGGCACATTCACTATCTTCAATATCCGCCACTGCTAATGCCACAGCCGCCAGATTCAGCAACCCACGATGTTCCACCTGTCTCAGGCTTCCGAATCTGCAGGCTCGCAGCCACGCGTGCAATCAAACTGCACGTACCCATCTCATCTCCCGCAGGAACGCTGCATTGATCTTGACAGGGGCAATGCTTGGACTGAATAATGTGGTTGTCCAGAGTGCAGAGGCGGCTGCCAGGAGGCCGCCGCCACCTCCCCCGCAAGAGAAGAAGGACCCCAATCTGAGTGGAGTTCAGGCAAAAGTGCTAGCTAGCAGAAAGAGGAAGGAAGCCATGAAAGAAGCTATGGCCAAGCTAAGAGAGAGAGGGAAGGCTGTTGACCAGCCACCTCCTGAATAA

Protein sequence

MAHSLSSISATANATAARFSNPRCSTCLRLPNLQARSHACNQTARTHLISRRNAALILTGAMLGLNNVVVQSAEAAARRPPPPPPQEKKDPNLSGVQAKVLASRKRKEAMKEAMAKLRERGKAVDQPPPE
BLAST of CmaCh04G018490 vs. TrEMBL
Match: A0A0A0KPU5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G588750 PE=4 SV=1)

HSP 1 Score: 171.0 bits (432), Expect = 9.4e-40
Identity = 103/135 (76.30%), Postives = 112/135 (82.96%), Query Frame = 1

Query: 1   MAHSLSSISATANATAA-----RFSNPRCSTCLRLPNLQARSHACNQTARTHLISRRNAA 60
           MAHSLSSISATAN TA      RFSN +CS   RLPN QA S+ACN+T  T+LISRRN A
Sbjct: 1   MAHSLSSISATANVTATLSRSIRFSNTQCSY-QRLPNPQACSNACNETQHTNLISRRNTA 60

Query: 61  LILTGAMLGLNNVVVQSAEAAARRPPPPPPQEKKDPNLSGVQAKVLASRKRKEAMKEAMA 120
           LILTG MLG+N VV + AEAAARRPPPPPPQEKKDPNLSGVQAKVLAS+KRKEA+KEA A
Sbjct: 61  LILTGVMLGVN-VVDRRAEAAARRPPPPPPQEKKDPNLSGVQAKVLASKKRKEALKEATA 120

Query: 121 KLRERGKAVDQPPPE 131
           KLR +GK VDQPPPE
Sbjct: 121 KLRAKGKPVDQPPPE 133

BLAST of CmaCh04G018490 vs. TrEMBL
Match: A0A067DSG4_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g032923mg PE=4 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 2.9e-20
Identity = 71/132 (53.79%), Postives = 92/132 (69.70%), Query Frame = 1

Query: 1   MAHSLSSISATANATAARFSNPRCSTCLRLPNLQA-RSHACNQTART----HLISRRNAA 60
           MAHSL++   T +   +  SN +    L +P++   R  AC+Q ++      LI RRN  
Sbjct: 1   MAHSLTTAPPTTSTPISTKSNKK----LNVPSVCFHRVWACDQHSKQALDDKLIHRRNVT 60

Query: 61  LILTGAMLGLNNVVVQSAEAAARRPPPPPPQEKKDPNLSGVQAKVLASRKRKEAMKEAMA 120
           L L GA+LGLN    ++A AAARRPPPP P+EKKDPN+SGVQAKVLAS+KRKEAMK+A+A
Sbjct: 61  LGLAGAVLGLNVSGDRNANAAARRPPPPQPEEKKDPNVSGVQAKVLASKKRKEAMKQAVA 120

Query: 121 KLRERGKAVDQP 128
           KLRE+GK V+ P
Sbjct: 121 KLREKGKPVNGP 128

BLAST of CmaCh04G018490 vs. TrEMBL
Match: V4TPT1_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10022842mg PE=4 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 6.4e-20
Identity = 70/130 (53.85%), Postives = 86/130 (66.15%), Query Frame = 1

Query: 1   MAHSLSSISATANATAARFSNPRC---STCLRLPNLQARSHACNQTARTHLISRRNAALI 60
           MAHSL++   T +   +  SN +    S C     + A      Q     LI RRN AL 
Sbjct: 1   MAHSLTTAPPTTSTPISTKSNKKLNAPSVCFH--RVWACDQHYEQAPDDKLIHRRNVALG 60

Query: 61  LTGAMLGLNNVVVQSAEAAARRPPPPPPQEKKDPNLSGVQAKVLASRKRKEAMKEAMAKL 120
           L GA+LGLN    ++A AAARRPPPP P+EKKDPN+SGVQAKVLAS+KRKEAMK+A+AKL
Sbjct: 61  LAGAVLGLNVTGDRNANAAARRPPPPQPEEKKDPNVSGVQAKVLASKKRKEAMKQAVAKL 120

Query: 121 RERGKAVDQP 128
           RE+GK V+ P
Sbjct: 121 REKGKPVNGP 128

BLAST of CmaCh04G018490 vs. TrEMBL
Match: A0A0B0NRC8_GOSAR (DNA translocase FtsK OS=Gossypium arboreum GN=F383_17943 PE=4 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 2.4e-19
Identity = 74/134 (55.22%), Postives = 87/134 (64.93%), Query Frame = 1

Query: 1   MAHSLSSISATANATAARFSNPRCS--TCLRLPNLQARSHACNQTARTHLISRRNAALIL 60
           MAHSL+ + ATA    A+ SN   S    LRL  + A     +      L+ RR   L L
Sbjct: 1   MAHSLTPVPATAITPIAK-SNKLASHIPTLRLQTVSASYQTPHHVLDDKLVHRRAVTLSL 60

Query: 61  TGAMLGLNNVVVQSAEAAARRPPPPPPQEKKDPNLSGVQAKVLASRKRKEAMKEAMAKLR 120
            GAML LN V  Q    AARRPPPPPP+EKKDP++SGVQAKVLAS+KRKEAMK+AMAK+R
Sbjct: 61  AGAMLSLN-VGDQRQANAARRPPPPPPEEKKDPSVSGVQAKVLASKKRKEAMKQAMAKMR 120

Query: 121 ERGKAVD--QPPPE 131
           E+GK VD   PP E
Sbjct: 121 EKGKPVDGTSPPSE 132

BLAST of CmaCh04G018490 vs. TrEMBL
Match: A0A0D2T7H3_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_011G133600 PE=4 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 1.2e-18
Identity = 70/133 (52.63%), Postives = 85/133 (63.91%), Query Frame = 1

Query: 1   MAHSLSSISATANATAARFSNPRCST-CLRLPNLQARSHACNQTARTHLISRRNAALILT 60
           MAHSL+ + AT+    A+ +        LRL  + A     +      L+ RR   L L 
Sbjct: 1   MAHSLTPVPATSITPIAKSTKLASHIPTLRLQTVSASYQTPHHVLDDKLVHRRTVTLSLA 60

Query: 61  GAMLGLNNVVVQSAEAAARRPPPPPPQEKKDPNLSGVQAKVLASRKRKEAMKEAMAKLRE 120
           GAML LN V  Q    AARRPPPPPP+EKKDP++SGVQAKVLAS+KRKEAMK+AMAK+RE
Sbjct: 61  GAMLSLN-VGDQRQANAARRPPPPPPEEKKDPSVSGVQAKVLASKKRKEAMKQAMAKMRE 120

Query: 121 RGKAVD--QPPPE 131
           +GK VD   PP E
Sbjct: 121 KGKPVDGTSPPSE 132

BLAST of CmaCh04G018490 vs. TAIR10
Match: AT1G21500.1 (AT1G21500.1 unknown protein)

HSP 1 Score: 81.6 bits (200), Expect = 3.8e-16
Identity = 60/130 (46.15%), Postives = 80/130 (61.54%), Query Frame = 1

Query: 1   MAHSLSSISATANATAARFSNPRCSTCLRLPNLQARSHACNQTARTHLISRRNAALILTG 60
           +AHSL  +S  A+A  AR S+P   +  + P +               I+RR   + L G
Sbjct: 2   VAHSLVPLSPAAHA--ARLSSPSPRSLPQAPPV---------VLAVPPINRRTILVGLGG 61

Query: 61  AMLGLNNVVV-QSAEAAARRPPPPPPQEKKDPNLSGVQAKVLASRKRKEAMKEAMAKLRE 120
           A+   N +   + A AAARRPPPPPP+EKKDP ++GVQAKVLAS+KRKE MK ++AKLRE
Sbjct: 62  ALWSWNALAAKEEAMAAARRPPPPPPKEKKDPTVTGVQAKVLASKKRKEEMKASIAKLRE 120

Query: 121 RGKAVDQPPP 130
           +GK V +  P
Sbjct: 122 KGKPVVEAKP 120

BLAST of CmaCh04G018490 vs. NCBI nr
Match: gi|449435109|ref|XP_004135338.1| (PREDICTED: uncharacterized protein LOC101217329 [Cucumis sativus])

HSP 1 Score: 171.0 bits (432), Expect = 1.4e-39
Identity = 103/135 (76.30%), Postives = 112/135 (82.96%), Query Frame = 1

Query: 1   MAHSLSSISATANATAA-----RFSNPRCSTCLRLPNLQARSHACNQTARTHLISRRNAA 60
           MAHSLSSISATAN TA      RFSN +CS   RLPN QA S+ACN+T  T+LISRRN A
Sbjct: 1   MAHSLSSISATANVTATLSRSIRFSNTQCSY-QRLPNPQACSNACNETQHTNLISRRNTA 60

Query: 61  LILTGAMLGLNNVVVQSAEAAARRPPPPPPQEKKDPNLSGVQAKVLASRKRKEAMKEAMA 120
           LILTG MLG+N VV + AEAAARRPPPPPPQEKKDPNLSGVQAKVLAS+KRKEA+KEA A
Sbjct: 61  LILTGVMLGVN-VVDRRAEAAARRPPPPPPQEKKDPNLSGVQAKVLASKKRKEALKEATA 120

Query: 121 KLRERGKAVDQPPPE 131
           KLR +GK VDQPPPE
Sbjct: 121 KLRAKGKPVDQPPPE 133

BLAST of CmaCh04G018490 vs. NCBI nr
Match: gi|659090434|ref|XP_008446014.1| (PREDICTED: uncharacterized protein LOC103488868 [Cucumis melo])

HSP 1 Score: 166.4 bits (420), Expect = 3.3e-38
Identity = 102/135 (75.56%), Postives = 113/135 (83.70%), Query Frame = 1

Query: 1   MAHSLSSISATANATAA-----RFSNPRCSTCLRLPNLQARSHACNQTARTHLISRRNAA 60
           MAHSLSSISATAN TA      RFSN +CS   RLPN QARS+A NQ+  ++LISRRN A
Sbjct: 1   MAHSLSSISATANVTATISRSIRFSNTQCSYH-RLPNPQARSNARNQSEPSNLISRRNTA 60

Query: 61  LILTGAMLGLNNVVVQSAEAAARRPPPPPPQEKKDPNLSGVQAKVLASRKRKEAMKEAMA 120
           LILTG MLG+N VV +SAEAAARRPPPPPP+EKKDPNLSGVQAKVLAS+KRKEA+KEA A
Sbjct: 61  LILTGVMLGVN-VVDRSAEAAARRPPPPPPKEKKDPNLSGVQAKVLASKKRKEALKEATA 120

Query: 121 KLRERGKAVDQPPPE 131
           KLR +GK VDQPPPE
Sbjct: 121 KLRAKGKPVDQPPPE 133

BLAST of CmaCh04G018490 vs. NCBI nr
Match: gi|568879703|ref|XP_006492785.1| (PREDICTED: uncharacterized protein LOC102627820 [Citrus sinensis])

HSP 1 Score: 106.3 bits (264), Expect = 4.1e-20
Identity = 71/132 (53.79%), Postives = 92/132 (69.70%), Query Frame = 1

Query: 1   MAHSLSSISATANATAARFSNPRCSTCLRLPNLQA-RSHACNQTART----HLISRRNAA 60
           MAHSL++   T +   +  SN +    L +P++   R  AC+Q ++      LI RRN  
Sbjct: 1   MAHSLTTAPPTTSTPISTKSNKK----LNVPSVCFHRVWACDQHSKQALDDKLIHRRNVT 60

Query: 61  LILTGAMLGLNNVVVQSAEAAARRPPPPPPQEKKDPNLSGVQAKVLASRKRKEAMKEAMA 120
           L L GA+LGLN    ++A AAARRPPPP P+EKKDPN+SGVQAKVLAS+KRKEAMK+A+A
Sbjct: 61  LGLAGAVLGLNVSGDRNANAAARRPPPPQPEEKKDPNVSGVQAKVLASKKRKEAMKQAVA 120

Query: 121 KLRERGKAVDQP 128
           KLRE+GK V+ P
Sbjct: 121 KLREKGKPVNGP 128

BLAST of CmaCh04G018490 vs. NCBI nr
Match: gi|567899408|ref|XP_006442192.1| (hypothetical protein CICLE_v10022842mg [Citrus clementina])

HSP 1 Score: 105.1 bits (261), Expect = 9.1e-20
Identity = 70/130 (53.85%), Postives = 86/130 (66.15%), Query Frame = 1

Query: 1   MAHSLSSISATANATAARFSNPRC---STCLRLPNLQARSHACNQTARTHLISRRNAALI 60
           MAHSL++   T +   +  SN +    S C     + A      Q     LI RRN AL 
Sbjct: 1   MAHSLTTAPPTTSTPISTKSNKKLNAPSVCFH--RVWACDQHYEQAPDDKLIHRRNVALG 60

Query: 61  LTGAMLGLNNVVVQSAEAAARRPPPPPPQEKKDPNLSGVQAKVLASRKRKEAMKEAMAKL 120
           L GA+LGLN    ++A AAARRPPPP P+EKKDPN+SGVQAKVLAS+KRKEAMK+A+AKL
Sbjct: 61  LAGAVLGLNVTGDRNANAAARRPPPPQPEEKKDPNVSGVQAKVLASKKRKEAMKQAVAKL 120

Query: 121 RERGKAVDQP 128
           RE+GK V+ P
Sbjct: 121 REKGKPVNGP 128

BLAST of CmaCh04G018490 vs. NCBI nr
Match: gi|728834886|gb|KHG14329.1| (DNA translocase FtsK [Gossypium arboreum])

HSP 1 Score: 103.2 bits (256), Expect = 3.5e-19
Identity = 74/134 (55.22%), Postives = 87/134 (64.93%), Query Frame = 1

Query: 1   MAHSLSSISATANATAARFSNPRCS--TCLRLPNLQARSHACNQTARTHLISRRNAALIL 60
           MAHSL+ + ATA    A+ SN   S    LRL  + A     +      L+ RR   L L
Sbjct: 1   MAHSLTPVPATAITPIAK-SNKLASHIPTLRLQTVSASYQTPHHVLDDKLVHRRAVTLSL 60

Query: 61  TGAMLGLNNVVVQSAEAAARRPPPPPPQEKKDPNLSGVQAKVLASRKRKEAMKEAMAKLR 120
            GAML LN V  Q    AARRPPPPPP+EKKDP++SGVQAKVLAS+KRKEAMK+AMAK+R
Sbjct: 61  AGAMLSLN-VGDQRQANAARRPPPPPPEEKKDPSVSGVQAKVLASKKRKEAMKQAMAKMR 120

Query: 121 ERGKAVD--QPPPE 131
           E+GK VD   PP E
Sbjct: 121 EKGKPVDGTSPPSE 132

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KPU5_CUCSA9.4e-4076.30Uncharacterized protein OS=Cucumis sativus GN=Csa_5G588750 PE=4 SV=1[more]
A0A067DSG4_CITSI2.9e-2053.79Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g032923mg PE=4 SV=1[more]
V4TPT1_9ROSI6.4e-2053.85Uncharacterized protein OS=Citrus clementina GN=CICLE_v10022842mg PE=4 SV=1[more]
A0A0B0NRC8_GOSAR2.4e-1955.22DNA translocase FtsK OS=Gossypium arboreum GN=F383_17943 PE=4 SV=1[more]
A0A0D2T7H3_GOSRA1.2e-1852.63Uncharacterized protein OS=Gossypium raimondii GN=B456_011G133600 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT1G21500.13.8e-1646.15 unknown protein[more]
Match NameE-valueIdentityDescription
gi|449435109|ref|XP_004135338.1|1.4e-3976.30PREDICTED: uncharacterized protein LOC101217329 [Cucumis sativus][more]
gi|659090434|ref|XP_008446014.1|3.3e-3875.56PREDICTED: uncharacterized protein LOC103488868 [Cucumis melo][more]
gi|568879703|ref|XP_006492785.1|4.1e-2053.79PREDICTED: uncharacterized protein LOC102627820 [Citrus sinensis][more]
gi|567899408|ref|XP_006442192.1|9.1e-2053.85hypothetical protein CICLE_v10022842mg [Citrus clementina][more]
gi|728834886|gb|KHG14329.1|3.5e-1955.22DNA translocase FtsK [Gossypium arboreum][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
cellular_component GO:0009534 chloroplast thylakoid
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh04G018490.1CmaCh04G018490.1mRNA


Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableunknownCoilCoilcoord: 100..120
scor
NoneNo IPR availablePANTHERPTHR37182FAMILY NOT NAMEDcoord: 48..130
score: 2.9
NoneNo IPR availablePANTHERPTHR37182:SF1F24J8.11 PROTEINcoord: 48..130
score: 2.9