Cla022947 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla022947
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Unknown Protein (AHRD V1)
Location	Chr11 : 15850852 .. 15851386 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCACATTCACTATCTTCTATACCGGCGACTGCCAATGTCATAGCCGCTCTCTCATGCTCTACCAGATTCAGCAACAGGCGATGTTCTTATCAAAGGCTTCCAAATCTGCAGGCTCGTAGCGACCCATGCAACGAAACGCCACAACATAGCCATCACATCTCCCGCAGGTACAAGTCCAATGCGAGTAATATCCGTTGGCCATATTTAATGGTAAATTGAGTTTTTTGTGTTCAAATTCCTCTCGAATTATCAGCCACATCTAACAAATGTGGTGTCATTCGTGGCTTGAAATTGCAGAAACGCTGCCTTGATCTTGACAGGGGCAATGCTGGGAGTGAATGTGGTCGACCGGAGTGCAGAGGCGGCTGCCAGAAGGCCGCCACCACCTCCACCGCAAGAGAAGAAGGATCCCAATCTGAGTGGAGTTCAGGCAAAAGTGCTAGCTAGTAAAAAGAGGAAGGAAGCACTGAAAGAAGCTACGGCCAAGCTAAGAGCGAAAGGGAAGCCTGTTGACCAACCACCACCTGAATAA

mRNA sequence

ATGGCACATTCACTATCTTCTATACCGGCGACTGCCAATGTCATAGCCGCTCTCTCATGCTCTACCAGATTCAGCAACAGGCGATGTTCTTATCAAAGGCTTCCAAATCTGCAGGCTCGTAGCGACCCATGCAACGAAACGCCACAACATAGCCATCACATCTCCCGCAGAAACGCTGCCTTGATCTTGACAGGGGCAATGCTGGGAGTGAATGTGGTCGACCGGAGTGCAGAGGCGGCTGCCAGAAGGCCGCCACCACCTCCACCGCAAGAGAAGAAGGATCCCAATCTGAGTGGAGTTCAGGCAAAAGTGCTAGCTAGTAAAAAGAGGAAGGAAGCACTGAAAGAAGCTACGGCCAAGCTAAGAGCGAAAGGGAAGCCTGTTGACCAACCACCACCTGAATAA

Coding sequence (CDS)

ATGGCACATTCACTATCTTCTATACCGGCGACTGCCAATGTCATAGCCGCTCTCTCATGCTCTACCAGATTCAGCAACAGGCGATGTTCTTATCAAAGGCTTCCAAATCTGCAGGCTCGTAGCGACCCATGCAACGAAACGCCACAACATAGCCATCACATCTCCCGCAGAAACGCTGCCTTGATCTTGACAGGGGCAATGCTGGGAGTGAATGTGGTCGACCGGAGTGCAGAGGCGGCTGCCAGAAGGCCGCCACCACCTCCACCGCAAGAGAAGAAGGATCCCAATCTGAGTGGAGTTCAGGCAAAAGTGCTAGCTAGTAAAAAGAGGAAGGAAGCACTGAAAGAAGCTACGGCCAAGCTAAGAGCGAAAGGGAAGCCTGTTGACCAACCACCACCTGAATAA

Protein sequence

MAHSLSSIPATANVIAALSCSTRFSNRRCSYQRLPNLQARSDPCNETPQHSHHISRRNAALILTGAMLGVNVVDRSAEAAARRPPPPPPQEKKDPNLSGVQAKVLASKKRKEALKEATAKLRAKGKPVDQPPPE

Homology

[Close]

BLAST of Cla022947 vs. TrEMBL
Match: A0A0A0KPU5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G588750 PE=4 SV=1)

HSP 1 Score: 221.1 bits (562), Expect = 8.2e-55
Identity = 116/134 (86.57%), Postives = 120/134 (89.55%), Query Frame = 1


Query: 1   MAHSLSSIPATANVIAALSCSTRFSNRRCSYQRLPNLQARSDPCNETPQHSHHISRRNAA 60
           MAHSLSSI ATANV A LS S RFSN +CSYQRLPN QA S+ CNET QH++ ISRRN A
Sbjct: 1   MAHSLSSISATANVTATLSRSIRFSNTQCSYQRLPNPQACSNACNET-QHTNLISRRNTA 60

Query: 61  LILTGAMLGVNVVDRSAEAAARRPPPPPPQEKKDPNLSGVQAKVLASKKRKEALKEATAK 120
           LILTG MLGVNVVDR AEAAARRPPPPPPQEKKDPNLSGVQAKVLASKKRKEALKEATAK
Sbjct: 61  LILTGVMLGVNVVDRRAEAAARRPPPPPPQEKKDPNLSGVQAKVLASKKRKEALKEATAK 120

Query: 121 LRAKGKPVDQPPPE 135
           LRAKGKPVDQPPPE
Sbjct: 121 LRAKGKPVDQPPPE 133

[Close]

BLAST of Cla022947 vs. TrEMBL
Match: A0A0D2T7H3_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_011G133600 PE=4 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 8.0e-26
Identity = 72/140 (51.43%), Postives = 95/140 (67.86%), Query Frame = 1


Query: 1   MAHSLSSIPATANVIAALSCSTRFSNRRCSYQRLPNLQARSDPCN-ETPQH---SHHISR 60
           MAHSL+ +PAT+  I  ++ ST+ ++       +P L+ ++   + +TP H      + R
Sbjct: 1   MAHSLTPVPATS--ITPIAKSTKLASH------IPTLRLQTVSASYQTPHHVLDDKLVHR 60

Query: 61  RNAALILTGAMLGVNVVDRSAEAAARRPPPPPPQEKKDPNLSGVQAKVLASKKRKEALKE 120
           R   L L GAML +NV D+    AARRPPPPPP+EKKDP++SGVQAKVLASKKRKEA+K+
Sbjct: 61  RTVTLSLAGAMLSLNVGDQRQANAARRPPPPPPEEKKDPSVSGVQAKVLASKKRKEAMKQ 120

Query: 121 ATAKLRAKGKPVD--QPPPE 135
           A AK+R KGKPVD   PP E
Sbjct: 121 AMAKMREKGKPVDGTSPPSE 132

[Close]

BLAST of Cla022947 vs. TrEMBL
Match: A0A0B0NRC8_GOSAR (DNA translocase FtsK OS=Gossypium arboreum GN=F383_17943 PE=4 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 2.3e-25
Identity = 74/140 (52.86%), Postives = 93/140 (66.43%), Query Frame = 1


Query: 1   MAHSLSSIPATANVIAALSCSTRFSNRRCSYQRLPNLQARSDPCN-ETPQH---SHHISR 60
           MAHSL+ +PATA    A S      N+  S+  +P L+ ++   + +TP H      + R
Sbjct: 1   MAHSLTPVPATAITPIAKS------NKLASH--IPTLRLQTVSASYQTPHHVLDDKLVHR 60

Query: 61  RNAALILTGAMLGVNVVDRSAEAAARRPPPPPPQEKKDPNLSGVQAKVLASKKRKEALKE 120
           R   L L GAML +NV D+    AARRPPPPPP+EKKDP++SGVQAKVLASKKRKEA+K+
Sbjct: 61  RAVTLSLAGAMLSLNVGDQRQANAARRPPPPPPEEKKDPSVSGVQAKVLASKKRKEAMKQ 120

Query: 121 ATAKLRAKGKPVD--QPPPE 135
           A AK+R KGKPVD   PP E
Sbjct: 121 AMAKMREKGKPVDGTSPPSE 132

[Close]

BLAST of Cla022947 vs. TrEMBL
Match: V4TPT1_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10022842mg PE=4 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 3.0e-25
Identity = 70/132 (53.03%), Postives = 87/132 (65.91%), Query Frame = 1


Query: 1   MAHSLSSIPATANVIAALSCSTRFSNRRCSYQRLPNLQARSDPCNETPQHSHHISRRNAA 60
           MAHSL++ P T +   +   + + +     + R+       D   E       I RRN A
Sbjct: 1   MAHSLTTAPPTTSTPISTKSNKKLNAPSVCFHRV----WACDQHYEQAPDDKLIHRRNVA 60

Query: 61  LILTGAMLGVNVV-DRSAEAAARRPPPPPPQEKKDPNLSGVQAKVLASKKRKEALKEATA 120
           L L GA+LG+NV  DR+A AAARRPPPP P+EKKDPN+SGVQAKVLASKKRKEA+K+A A
Sbjct: 61  LGLAGAVLGLNVTGDRNANAAARRPPPPQPEEKKDPNVSGVQAKVLASKKRKEAMKQAVA 120

Query: 121 KLRAKGKPVDQP 132
           KLR KGKPV+ P
Sbjct: 121 KLREKGKPVNGP 128

[Close]

BLAST of Cla022947 vs. TrEMBL
Match: W9RQQ1_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_020379 PE=4 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 4.0e-25
Identity = 71/136 (52.21%), Postives = 88/136 (64.71%), Query Frame = 1


Query: 1   MAHSLSSIPATANVIAALSCSTRFSNRRCSYQRLPNLQARSDPCNETPQHSHH--ISRRN 60
           MAHSL+  PA A+     S +++ +N          ++A     N  P  +H+  I+RR 
Sbjct: 1   MAHSLT--PAAASATTPFSTTSKRNNTNFPSPTFLRVRASHQAQNVAPDDNHNNIINRRT 60

Query: 61  AALILTGAMLGVNVVDRSAEAAARRPPPPPPQEKKDPNLSGVQAKVLASKKRKEALKEAT 120
            +L L GA+L +N  D SA AA RRPPPPPP+EKKD NLSGVQAKVLASKKRKEA+KE  
Sbjct: 61  LSLGLAGAVLSLNGGDGSARAAGRRPPPPPPEEKKDLNLSGVQAKVLASKKRKEAMKEEI 120

Query: 121 AKLRAKGKPVDQPPPE 135
           AKLR KGK V +PP E
Sbjct: 121 AKLREKGKAVIKPPSE 134

[Close]

BLAST of Cla022947 vs. NCBI nr
Match: gi|449435109|ref|XP_004135338.1| (PREDICTED: uncharacterized protein LOC101217329 [Cucumis sativus])

HSP 1 Score: 221.1 bits (562), Expect = 1.2e-54
Identity = 116/134 (86.57%), Postives = 120/134 (89.55%), Query Frame = 1


Query: 1   MAHSLSSIPATANVIAALSCSTRFSNRRCSYQRLPNLQARSDPCNETPQHSHHISRRNAA 60
           MAHSLSSI ATANV A LS S RFSN +CSYQRLPN QA S+ CNET QH++ ISRRN A
Sbjct: 1   MAHSLSSISATANVTATLSRSIRFSNTQCSYQRLPNPQACSNACNET-QHTNLISRRNTA 60

Query: 61  LILTGAMLGVNVVDRSAEAAARRPPPPPPQEKKDPNLSGVQAKVLASKKRKEALKEATAK 120
           LILTG MLGVNVVDR AEAAARRPPPPPPQEKKDPNLSGVQAKVLASKKRKEALKEATAK
Sbjct: 61  LILTGVMLGVNVVDRRAEAAARRPPPPPPQEKKDPNLSGVQAKVLASKKRKEALKEATAK 120

Query: 121 LRAKGKPVDQPPPE 135
           LRAKGKPVDQPPPE
Sbjct: 121 LRAKGKPVDQPPPE 133

[Close]

BLAST of Cla022947 vs. NCBI nr
Match: gi|659090434|ref|XP_008446014.1| (PREDICTED: uncharacterized protein LOC103488868 [Cucumis melo])

HSP 1 Score: 210.7 bits (535), Expect = 1.6e-51
Identity = 111/134 (82.84%), Postives = 119/134 (88.81%), Query Frame = 1


Query: 1   MAHSLSSIPATANVIAALSCSTRFSNRRCSYQRLPNLQARSDPCNETPQHSHHISRRNAA 60
           MAHSLSSI ATANV A +S S RFSN +CSY RLPN QARS+  N++ + S+ ISRRN A
Sbjct: 1   MAHSLSSISATANVTATISRSIRFSNTQCSYHRLPNPQARSNARNQS-EPSNLISRRNTA 60

Query: 61  LILTGAMLGVNVVDRSAEAAARRPPPPPPQEKKDPNLSGVQAKVLASKKRKEALKEATAK 120
           LILTG MLGVNVVDRSAEAAARRPPPPPP+EKKDPNLSGVQAKVLASKKRKEALKEATAK
Sbjct: 61  LILTGVMLGVNVVDRSAEAAARRPPPPPPKEKKDPNLSGVQAKVLASKKRKEALKEATAK 120

Query: 121 LRAKGKPVDQPPPE 135
           LRAKGKPVDQPPPE
Sbjct: 121 LRAKGKPVDQPPPE 133

[Close]

BLAST of Cla022947 vs. NCBI nr
Match: gi|823246793|ref|XP_012456073.1| (PREDICTED: uncharacterized protein LOC105777371 [Gossypium raimondii])

HSP 1 Score: 124.8 bits (312), Expect = 1.1e-25
Identity = 72/140 (51.43%), Postives = 95/140 (67.86%), Query Frame = 1


Query: 1   MAHSLSSIPATANVIAALSCSTRFSNRRCSYQRLPNLQARSDPCN-ETPQH---SHHISR 60
           MAHSL+ +PAT+  I  ++ ST+ ++       +P L+ ++   + +TP H      + R
Sbjct: 1   MAHSLTPVPATS--ITPIAKSTKLASH------IPTLRLQTVSASYQTPHHVLDDKLVHR 60

Query: 61  RNAALILTGAMLGVNVVDRSAEAAARRPPPPPPQEKKDPNLSGVQAKVLASKKRKEALKE 120
           R   L L GAML +NV D+    AARRPPPPPP+EKKDP++SGVQAKVLASKKRKEA+K+
Sbjct: 61  RTVTLSLAGAMLSLNVGDQRQANAARRPPPPPPEEKKDPSVSGVQAKVLASKKRKEAMKQ 120

Query: 121 ATAKLRAKGKPVD--QPPPE 135
           A AK+R KGKPVD   PP E
Sbjct: 121 AMAKMREKGKPVDGTSPPSE 132

[Close]

BLAST of Cla022947 vs. NCBI nr
Match: gi|728834886|gb|KHG14329.1| (DNA translocase FtsK [Gossypium arboreum])

HSP 1 Score: 123.2 bits (308), Expect = 3.3e-25
Identity = 74/140 (52.86%), Postives = 93/140 (66.43%), Query Frame = 1


Query: 1   MAHSLSSIPATANVIAALSCSTRFSNRRCSYQRLPNLQARSDPCN-ETPQH---SHHISR 60
           MAHSL+ +PATA    A S      N+  S+  +P L+ ++   + +TP H      + R
Sbjct: 1   MAHSLTPVPATAITPIAKS------NKLASH--IPTLRLQTVSASYQTPHHVLDDKLVHR 60

Query: 61  RNAALILTGAMLGVNVVDRSAEAAARRPPPPPPQEKKDPNLSGVQAKVLASKKRKEALKE 120
           R   L L GAML +NV D+    AARRPPPPPP+EKKDP++SGVQAKVLASKKRKEA+K+
Sbjct: 61  RAVTLSLAGAMLSLNVGDQRQANAARRPPPPPPEEKKDPSVSGVQAKVLASKKRKEAMKQ 120

Query: 121 ATAKLRAKGKPVD--QPPPE 135
           A AK+R KGKPVD   PP E
Sbjct: 121 AMAKMREKGKPVDGTSPPSE 132

[Close]

BLAST of Cla022947 vs. NCBI nr
Match: gi|567899408|ref|XP_006442192.1| (hypothetical protein CICLE_v10022842mg [Citrus clementina])

HSP 1 Score: 122.9 bits (307), Expect = 4.4e-25
Identity = 70/132 (53.03%), Postives = 87/132 (65.91%), Query Frame = 1


Query: 1   MAHSLSSIPATANVIAALSCSTRFSNRRCSYQRLPNLQARSDPCNETPQHSHHISRRNAA 60
           MAHSL++ P T +   +   + + +     + R+       D   E       I RRN A
Sbjct: 1   MAHSLTTAPPTTSTPISTKSNKKLNAPSVCFHRV----WACDQHYEQAPDDKLIHRRNVA 60

Query: 61  LILTGAMLGVNVV-DRSAEAAARRPPPPPPQEKKDPNLSGVQAKVLASKKRKEALKEATA 120
           L L GA+LG+NV  DR+A AAARRPPPP P+EKKDPN+SGVQAKVLASKKRKEA+K+A A
Sbjct: 61  LGLAGAVLGLNVTGDRNANAAARRPPPPQPEEKKDPNVSGVQAKVLASKKRKEAMKQAVA 120

Query: 121 KLRAKGKPVDQP 132
           KLR KGKPV+ P
Sbjct: 121 KLREKGKPVNGP 128

The following BLAST results are available for this feature:

BLAST of Cla022947 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KPU5_CUCSA	8.2e-55	86.57	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G588750 PE=4 SV=1	[more]
A0A0D2T7H3_GOSRA	8.0e-26	51.43	Uncharacterized protein OS=Gossypium raimondii GN=B456_011G133600 PE=4 SV=1	[more]
A0A0B0NRC8_GOSAR	2.3e-25	52.86	DNA translocase FtsK OS=Gossypium arboreum GN=F383_17943 PE=4 SV=1	[more]
V4TPT1_9ROSI	3.0e-25	53.03	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10022842mg PE=4 SV=1	[more]
W9RQQ1_9ROSA	4.0e-25	52.21	Uncharacterized protein OS=Morus notabilis GN=L484_020379 PE=4 SV=1	[more]

BLAST of Cla022947 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449435109\|ref\|XP_004135338.1\|	1.2e-54	86.57	PREDICTED: uncharacterized protein LOC101217329 [Cucumis sativus]	[more]
gi\|659090434\|ref\|XP_008446014.1\|	1.6e-51	82.84	PREDICTED: uncharacterized protein LOC103488868 [Cucumis melo]	[more]
gi\|823246793\|ref\|XP_012456073.1\|	1.1e-25	51.43	PREDICTED: uncharacterized protein LOC105777371 [Gossypium raimondii]	[more]
gi\|728834886\|gb\|KHG14329.1\|	3.3e-25	52.86	DNA translocase FtsK [Gossypium arboreum]	[more]
gi\|567899408\|ref\|XP_006442192.1\|	4.4e-25	53.03	hypothetical protein CICLE_v10022842mg [Citrus clementina]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0048193	Golgi vesicle transport
biological_process	GO:0016192	vesicle-mediated transport
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0009534	chloroplast thylakoid
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0016020	membrane
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0042578	phosphoric ester hydrolase activity

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
WMU62693	watermelon EST collection version 2.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla022947	Cla022947.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
WMU62693	WMU62693	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR37182	FAMILY NOT NAMED	coord: 2..134 score: 6.4

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla022947	Cla97C11G219400	Watermelon (97103) v2	wmwmbB358
Cla022947	Csa5G588750	Cucumber (Chinese Long) v2	cuwmB432
Cla022947	MELO3C011848	Melon (DHL92) v3.5.1	mewmB077
Cla022947	CSPI05G21260	Wild cucumber (PI 183967)	cpiwmB444
Cla022947	Cucsa.075880	Cucumber (Gy14) v1	cgywmB080
Cla022947	CmaCh04G018490	Cucurbita maxima (Rimu)	cmawmB738
Cla022947	CmoCh04G019440	Cucurbita moschata (Rifu)	cmowmB732
Cla022947	CsGy5G020790	Cucumber (Gy14) v2	cgybwmB405
Cla022947	MELO3C011848.2	Melon (DHL92) v3.6.1	medwmB076
Cla022947	Carg24406	Silver-seed gourd	carwmB0131
Cla022947	CsaV3_5G030090	Cucumber (Chinese Long) v3	cucwmB458
Cla022947	BhiUN916G9	Wax gourd	wgowmB114

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla022947	Cucurbita moschata (Rifu)	cmowmB393
Cla022947	Wild cucumber (PI 183967)	cpiwmB452
Cla022947	Watermelon (Charleston Gray)	wcgwmB103
Cla022947	Cucurbita pepo (Zucchini)	cpewmB056
Cla022947	Cucurbita pepo (Zucchini)	cpewmB463
Cla022947	Bottle gourd (USVL1VR-Ls)	lsiwmB339
Cla022947	Silver-seed gourd	carwmB0687
Cla022947	Cucurbita maxima (Rimu)	cmawmB398