CSPI05G21260 (gene) Wild cucumber (PI 183967)

NameCSPI05G21260
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionDNA translocase FtsK
LocationChr5 : 22061005 .. 22062101 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ACTTGTTAATTTTCAGAGTGAAATCCATGAGTATCATAATTGTAAAGATAAATTTCCACTCCACTTGAAATTGAAATTGGGGTCCAGAGCTATATTGCCTTATCCACAACCGACCAATAGATTTCAATAACCATTCTCTAGAGAACCCCTATGGGATATCCTCTTTGAGAGTCTGTTGTTTACACATAAGAAATGTATTGCACAAAAGAAGAGAAAAAAAAGGTCTCTTCTATTCTAATATCATAAACCTCTCATATGGTGATGTGAGATTGAGAAACAATGGCACATTCACTATCTTCTGTATCGGCTACAGCCAATGTCACAGCCACTCTCTCGCGCTCTATCCGATTCAGCAACACACAATGTTCTTATCAAAGGCTTCCAAATCCACAAGCTTGCAGTAACGCTTGCAATGAAACTCAACATACCAATCTCATCTCACGCAGGTACAAGTCTAATGCAAGTGAATATGTACAACATTATATTATCAACGATAGATTCTGAGTTGGTTTTAAATTTCTTAATATCTACAAATTCTTTTGCATAATTGCTATTAGATGCAATTGACCCTAATAATAAGTTACATGCATTATAAATTTTTTGTGTTCAAATTCCTCTAAGATCATTAGCCACACATCCAATGTGGTGTGGCTCAAAATTGCAGAAACACTGCCTTGATCCTGACAGGGGTAATGCTGGGTGTGAATGTGGTTGACCGGAGGGCGGAGGCAGCGGCAAGAAGACCGCCACCACCTCCACCGCAAGAGAAGAAGGACCCCAATCTGAGTGGGGTTCAGGCAAAAGTGCTAGCTAGTAAAAAGAGAAAGGAAGCCCTTAAAGAAGCTACAGCTAAGCTAAGAGCGAAAGGGAAACCTGTTGACCAGCCACCACCTGAATAATTTATGTGAATCCCAAACTTTTTGATGTTTTCGCATTTCTCCCGTCGGATATTATGTTAATCCCCACCTGAATAAAGAGTGCATATTTATATTAACAACTCTAATATTCGTTTGTGAAGTAAGAAATATGATTAAGGCCATGTGGCCATTCTATTGATTGTACTCTATTCTATGAGTTAGCTATGAGTACCAAGAGCC

mRNA sequence

ATGGCACATTCACTATCTTCTGTATCGGCTACAGCCAATGTCACAGCCACTCTCTCGCGCTCTATCCGATTCAGCAACACACAATGTTCTTATCAAAGGCTTCCAAATCCACAAGCTTGCAGTAACGCTTGCAATGAAACTCAACATACCAATCTCATCTCACGCAGAAACACTGCCTTGATCCTGACAGGGGTAATGCTGGGTGTGAATGTGGTTGACCGGAGGGCGGAGGCAGCGGCAAGAAGACCGCCACCACCTCCACCGCAAGAGAAGAAGGACCCCAATCTGAGTGGGGTTCAGGCAAAAGTGCTAGCTAGTAAAAAGAGAAAGGAAGCCCTTAAAGAAGCTACAGCTAAGCTAAGAGCGAAAGGGAAACCTGTTGACCAGCCACCACCTGAATAA

Coding sequence (CDS)

ATGGCACATTCACTATCTTCTGTATCGGCTACAGCCAATGTCACAGCCACTCTCTCGCGCTCTATCCGATTCAGCAACACACAATGTTCTTATCAAAGGCTTCCAAATCCACAAGCTTGCAGTAACGCTTGCAATGAAACTCAACATACCAATCTCATCTCACGCAGAAACACTGCCTTGATCCTGACAGGGGTAATGCTGGGTGTGAATGTGGTTGACCGGAGGGCGGAGGCAGCGGCAAGAAGACCGCCACCACCTCCACCGCAAGAGAAGAAGGACCCCAATCTGAGTGGGGTTCAGGCAAAAGTGCTAGCTAGTAAAAAGAGAAAGGAAGCCCTTAAAGAAGCTACAGCTAAGCTAAGAGCGAAAGGGAAACCTGTTGACCAGCCACCACCTGAATAA
BLAST of CSPI05G21260 vs. TrEMBL
Match: A0A0A0KPU5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G588750 PE=4 SV=1)

HSP 1 Score: 249.2 bits (635), Expect = 2.8e-63
Identity = 132/133 (99.25%), Postives = 133/133 (100.00%), Query Frame = 1

Query: 1   MAHSLSSVSATANVTATLSRSIRFSNTQCSYQRLPNPQACSNACNETQHTNLISRRNTAL 60
           MAHSLSS+SATANVTATLSRSIRFSNTQCSYQRLPNPQACSNACNETQHTNLISRRNTAL
Sbjct: 1   MAHSLSSISATANVTATLSRSIRFSNTQCSYQRLPNPQACSNACNETQHTNLISRRNTAL 60

Query: 61  ILTGVMLGVNVVDRRAEAAARRPPPPPPQEKKDPNLSGVQAKVLASKKRKEALKEATAKL 120
           ILTGVMLGVNVVDRRAEAAARRPPPPPPQEKKDPNLSGVQAKVLASKKRKEALKEATAKL
Sbjct: 61  ILTGVMLGVNVVDRRAEAAARRPPPPPPQEKKDPNLSGVQAKVLASKKRKEALKEATAKL 120

Query: 121 RAKGKPVDQPPPE 134
           RAKGKPVDQPPPE
Sbjct: 121 RAKGKPVDQPPPE 133

BLAST of CSPI05G21260 vs. TrEMBL
Match: V4TPT1_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10022842mg PE=4 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 7.0e-22
Identity = 69/131 (52.67%), Postives = 86/131 (65.65%), Query Frame = 1

Query: 1   MAHSLSSVSATANVTATLSRSIRFSNTQCSYQRLPNPQACSNACNETQHTNLISRRNTAL 60
           MAHSL++   T +   +   + + +     + R+    AC     +     LI RRN AL
Sbjct: 1   MAHSLTTAPPTTSTPISTKSNKKLNAPSVCFHRV---WACDQHYEQAPDDKLIHRRNVAL 60

Query: 61  ILTGVMLGVNVV-DRRAEAAARRPPPPPPQEKKDPNLSGVQAKVLASKKRKEALKEATAK 120
            L G +LG+NV  DR A AAARRPPPP P+EKKDPN+SGVQAKVLASKKRKEA+K+A AK
Sbjct: 61  GLAGAVLGLNVTGDRNANAAARRPPPPQPEEKKDPNVSGVQAKVLASKKRKEAMKQAVAK 120

Query: 121 LRAKGKPVDQP 131
           LR KGKPV+ P
Sbjct: 121 LREKGKPVNGP 128

BLAST of CSPI05G21260 vs. TrEMBL
Match: A0A067DSG4_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g032923mg PE=4 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 4.5e-21
Identity = 68/131 (51.91%), Postives = 85/131 (64.89%), Query Frame = 1

Query: 1   MAHSLSSVSATANVTATLSRSIRFSNTQCSYQRLPNPQACSNACNETQHTNLISRRNTAL 60
           MAHSL++   T +   +   + + +     + R+    AC     +     LI RRN  L
Sbjct: 1   MAHSLTTAPPTTSTPISTKSNKKLNVPSVCFHRV---WACDQHSKQALDDKLIHRRNVTL 60

Query: 61  ILTGVMLGVNVV-DRRAEAAARRPPPPPPQEKKDPNLSGVQAKVLASKKRKEALKEATAK 120
            L G +LG+NV  DR A AAARRPPPP P+EKKDPN+SGVQAKVLASKKRKEA+K+A AK
Sbjct: 61  GLAGAVLGLNVSGDRNANAAARRPPPPQPEEKKDPNVSGVQAKVLASKKRKEAMKQAVAK 120

Query: 121 LRAKGKPVDQP 131
           LR KGKPV+ P
Sbjct: 121 LREKGKPVNGP 128

BLAST of CSPI05G21260 vs. TrEMBL
Match: W9RQQ1_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_020379 PE=4 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 7.7e-21
Identity = 70/136 (51.47%), Postives = 88/136 (64.71%), Query Frame = 1

Query: 1   MAHSLSSVSATANVTATLSRSIRFSNTQC---SYQRLPNPQACSNACNETQHTNLISRRN 60
           MAHSL+  +A+A  T   S + + +NT     ++ R+       N   +  H N+I+RR 
Sbjct: 1   MAHSLTPAAASA--TTPFSTTSKRNNTNFPSPTFLRVRASHQAQNVAPDDNHNNIINRRT 60

Query: 61  TALILTGVMLGVNVVDRRAEAAARRPPPPPPQEKKDPNLSGVQAKVLASKKRKEALKEAT 120
            +L L G +L +N  D  A AA RRPPPPPP+EKKD NLSGVQAKVLASKKRKEA+KE  
Sbjct: 61  LSLGLAGAVLSLNGGDGSARAAGRRPPPPPPEEKKDLNLSGVQAKVLASKKRKEAMKEEI 120

Query: 121 AKLRAKGKPVDQPPPE 134
           AKLR KGK V +PP E
Sbjct: 121 AKLREKGKAVIKPPSE 134

BLAST of CSPI05G21260 vs. TrEMBL
Match: A0A0B0NRC8_GOSAR (DNA translocase FtsK OS=Gossypium arboreum GN=F383_17943 PE=4 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 3.8e-20
Identity = 70/135 (51.85%), Postives = 83/135 (61.48%), Query Frame = 1

Query: 1   MAHSLSSVSATANVTATLSRSIRFSNTQCSYQRLPNPQACSNACNETQHTNLISRRNTAL 60
           MAHSL+ V ATA      S  +    +     RL    A     +      L+ RR   L
Sbjct: 1   MAHSLTPVPATAITPIAKSNKLA---SHIPTLRLQTVSASYQTPHHVLDDKLVHRRAVTL 60

Query: 61  ILTGVMLGVNVVDRRAEAAARRPPPPPPQEKKDPNLSGVQAKVLASKKRKEALKEATAKL 120
            L G ML +NV D+R   AARRPPPPPP+EKKDP++SGVQAKVLASKKRKEA+K+A AK+
Sbjct: 61  SLAGAMLSLNVGDQRQANAARRPPPPPPEEKKDPSVSGVQAKVLASKKRKEAMKQAMAKM 120

Query: 121 RAKGKPVD--QPPPE 134
           R KGKPVD   PP E
Sbjct: 121 REKGKPVDGTSPPSE 132

BLAST of CSPI05G21260 vs. TAIR10
Match: AT1G21500.1 (AT1G21500.1 unknown protein)

HSP 1 Score: 78.6 bits (192), Expect = 3.3e-15
Identity = 58/134 (43.28%), Postives = 75/134 (55.97%), Query Frame = 1

Query: 1   MAHSLSSVSATANVTATLSRSIRFSNTQCSYQRLPNPQACSNACNETQHTNLISRRNTAL 60
           +AHSL  +S  A+     S               P+P++   A         I+RR   +
Sbjct: 2   VAHSLVPLSPAAHAARLSS---------------PSPRSLPQAPPVVLAVPPINRRTILV 61

Query: 61  ILTGVMLGVNVVDRRAEA--AARRPPPPPPQEKKDPNLSGVQAKVLASKKRKEALKEATA 120
            L G +   N +  + EA  AARRPPPPPP+EKKDP ++GVQAKVLASKKRKE +K + A
Sbjct: 62  GLGGALWSWNALAAKEEAMAAARRPPPPPPKEKKDPTVTGVQAKVLASKKRKEEMKASIA 120

Query: 121 KLRAKGKPVDQPPP 133
           KLR KGKPV +  P
Sbjct: 122 KLREKGKPVVEAKP 120

BLAST of CSPI05G21260 vs. NCBI nr
Match: gi|449435109|ref|XP_004135338.1| (PREDICTED: uncharacterized protein LOC101217329 [Cucumis sativus])

HSP 1 Score: 249.2 bits (635), Expect = 4.0e-63
Identity = 132/133 (99.25%), Postives = 133/133 (100.00%), Query Frame = 1

Query: 1   MAHSLSSVSATANVTATLSRSIRFSNTQCSYQRLPNPQACSNACNETQHTNLISRRNTAL 60
           MAHSLSS+SATANVTATLSRSIRFSNTQCSYQRLPNPQACSNACNETQHTNLISRRNTAL
Sbjct: 1   MAHSLSSISATANVTATLSRSIRFSNTQCSYQRLPNPQACSNACNETQHTNLISRRNTAL 60

Query: 61  ILTGVMLGVNVVDRRAEAAARRPPPPPPQEKKDPNLSGVQAKVLASKKRKEALKEATAKL 120
           ILTGVMLGVNVVDRRAEAAARRPPPPPPQEKKDPNLSGVQAKVLASKKRKEALKEATAKL
Sbjct: 61  ILTGVMLGVNVVDRRAEAAARRPPPPPPQEKKDPNLSGVQAKVLASKKRKEALKEATAKL 120

Query: 121 RAKGKPVDQPPPE 134
           RAKGKPVDQPPPE
Sbjct: 121 RAKGKPVDQPPPE 133

BLAST of CSPI05G21260 vs. NCBI nr
Match: gi|659090434|ref|XP_008446014.1| (PREDICTED: uncharacterized protein LOC103488868 [Cucumis melo])

HSP 1 Score: 224.2 bits (570), Expect = 1.4e-55
Identity = 121/133 (90.98%), Postives = 128/133 (96.24%), Query Frame = 1

Query: 1   MAHSLSSVSATANVTATLSRSIRFSNTQCSYQRLPNPQACSNACNETQHTNLISRRNTAL 60
           MAHSLSS+SATANVTAT+SRSIRFSNTQCSY RLPNPQA SNA N+++ +NLISRRNTAL
Sbjct: 1   MAHSLSSISATANVTATISRSIRFSNTQCSYHRLPNPQARSNARNQSEPSNLISRRNTAL 60

Query: 61  ILTGVMLGVNVVDRRAEAAARRPPPPPPQEKKDPNLSGVQAKVLASKKRKEALKEATAKL 120
           ILTGVMLGVNVVDR AEAAARRPPPPPP+EKKDPNLSGVQAKVLASKKRKEALKEATAKL
Sbjct: 61  ILTGVMLGVNVVDRSAEAAARRPPPPPPKEKKDPNLSGVQAKVLASKKRKEALKEATAKL 120

Query: 121 RAKGKPVDQPPPE 134
           RAKGKPVDQPPPE
Sbjct: 121 RAKGKPVDQPPPE 133

BLAST of CSPI05G21260 vs. NCBI nr
Match: gi|567899408|ref|XP_006442192.1| (hypothetical protein CICLE_v10022842mg [Citrus clementina])

HSP 1 Score: 111.7 bits (278), Expect = 1.0e-21
Identity = 69/131 (52.67%), Postives = 86/131 (65.65%), Query Frame = 1

Query: 1   MAHSLSSVSATANVTATLSRSIRFSNTQCSYQRLPNPQACSNACNETQHTNLISRRNTAL 60
           MAHSL++   T +   +   + + +     + R+    AC     +     LI RRN AL
Sbjct: 1   MAHSLTTAPPTTSTPISTKSNKKLNAPSVCFHRV---WACDQHYEQAPDDKLIHRRNVAL 60

Query: 61  ILTGVMLGVNVV-DRRAEAAARRPPPPPPQEKKDPNLSGVQAKVLASKKRKEALKEATAK 120
            L G +LG+NV  DR A AAARRPPPP P+EKKDPN+SGVQAKVLASKKRKEA+K+A AK
Sbjct: 61  GLAGAVLGLNVTGDRNANAAARRPPPPQPEEKKDPNVSGVQAKVLASKKRKEAMKQAVAK 120

Query: 121 LRAKGKPVDQP 131
           LR KGKPV+ P
Sbjct: 121 LREKGKPVNGP 128

BLAST of CSPI05G21260 vs. NCBI nr
Match: gi|568879703|ref|XP_006492785.1| (PREDICTED: uncharacterized protein LOC102627820 [Citrus sinensis])

HSP 1 Score: 109.0 bits (271), Expect = 6.5e-21
Identity = 68/131 (51.91%), Postives = 85/131 (64.89%), Query Frame = 1

Query: 1   MAHSLSSVSATANVTATLSRSIRFSNTQCSYQRLPNPQACSNACNETQHTNLISRRNTAL 60
           MAHSL++   T +   +   + + +     + R+    AC     +     LI RRN  L
Sbjct: 1   MAHSLTTAPPTTSTPISTKSNKKLNVPSVCFHRV---WACDQHSKQALDDKLIHRRNVTL 60

Query: 61  ILTGVMLGVNVV-DRRAEAAARRPPPPPPQEKKDPNLSGVQAKVLASKKRKEALKEATAK 120
            L G +LG+NV  DR A AAARRPPPP P+EKKDPN+SGVQAKVLASKKRKEA+K+A AK
Sbjct: 61  GLAGAVLGLNVSGDRNANAAARRPPPPQPEEKKDPNVSGVQAKVLASKKRKEAMKQAVAK 120

Query: 121 LRAKGKPVDQP 131
           LR KGKPV+ P
Sbjct: 121 LREKGKPVNGP 128

BLAST of CSPI05G21260 vs. NCBI nr
Match: gi|703117377|ref|XP_010101364.1| (hypothetical protein L484_020379 [Morus notabilis])

HSP 1 Score: 108.2 bits (269), Expect = 1.1e-20
Identity = 70/136 (51.47%), Postives = 88/136 (64.71%), Query Frame = 1

Query: 1   MAHSLSSVSATANVTATLSRSIRFSNTQC---SYQRLPNPQACSNACNETQHTNLISRRN 60
           MAHSL+  +A+A  T   S + + +NT     ++ R+       N   +  H N+I+RR 
Sbjct: 1   MAHSLTPAAASA--TTPFSTTSKRNNTNFPSPTFLRVRASHQAQNVAPDDNHNNIINRRT 60

Query: 61  TALILTGVMLGVNVVDRRAEAAARRPPPPPPQEKKDPNLSGVQAKVLASKKRKEALKEAT 120
            +L L G +L +N  D  A AA RRPPPPPP+EKKD NLSGVQAKVLASKKRKEA+KE  
Sbjct: 61  LSLGLAGAVLSLNGGDGSARAAGRRPPPPPPEEKKDLNLSGVQAKVLASKKRKEAMKEEI 120

Query: 121 AKLRAKGKPVDQPPPE 134
           AKLR KGK V +PP E
Sbjct: 121 AKLREKGKAVIKPPSE 134

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KPU5_CUCSA2.8e-6399.25Uncharacterized protein OS=Cucumis sativus GN=Csa_5G588750 PE=4 SV=1[more]
V4TPT1_9ROSI7.0e-2252.67Uncharacterized protein OS=Citrus clementina GN=CICLE_v10022842mg PE=4 SV=1[more]
A0A067DSG4_CITSI4.5e-2151.91Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g032923mg PE=4 SV=1[more]
W9RQQ1_9ROSA7.7e-2151.47Uncharacterized protein OS=Morus notabilis GN=L484_020379 PE=4 SV=1[more]
A0A0B0NRC8_GOSAR3.8e-2051.85DNA translocase FtsK OS=Gossypium arboreum GN=F383_17943 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT1G21500.13.3e-1543.28 unknown protein[more]
Match NameE-valueIdentityDescription
gi|449435109|ref|XP_004135338.1|4.0e-6399.25PREDICTED: uncharacterized protein LOC101217329 [Cucumis sativus][more]
gi|659090434|ref|XP_008446014.1|1.4e-5590.98PREDICTED: uncharacterized protein LOC103488868 [Cucumis melo][more]
gi|567899408|ref|XP_006442192.1|1.0e-2152.67hypothetical protein CICLE_v10022842mg [Citrus clementina][more]
gi|568879703|ref|XP_006492785.1|6.5e-2151.91PREDICTED: uncharacterized protein LOC102627820 [Citrus sinensis][more]
gi|703117377|ref|XP_010101364.1|1.1e-2051.47hypothetical protein L484_020379 [Morus notabilis][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI05G21260.1CSPI05G21260.1mRNA


Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR37182FAMILY NOT NAMEDcoord: 2..133
score: 1.5

The following gene(s) are paralogous to this gene:

None