CmoCh04G010870 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh04G010870
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionNucleic acid-binding, OB-fold-like protein
LocationCmo_Chr04 : 5478265 .. 5483123 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TTTTTATTTAATTTTCTCTATAATTTTCATCGCCTTGGCACGCGCACCAGTCATCGGACATCATAACCAACGTATCTCACCTTTCTAAACCCTACCACCCACTGTACGCCGCCCCGCCGCACGCCGTTCCTGCCCGATAGTTTCTAAACCCTCGAGTTTGCAGCAGCTTAGAGCTTAAAAGGGTTGTTGGGTTTTTTTTTAGGGGTTTCAATCTCAGGGGCAAGATGAAGCAGGTAGTGGGGATGGTGGTCTCAAATAAAATGCAGAAATCGGTGGTCGTTGCAGTGGACAGATTGTTTTATCACAAGCTCTATAATCGCTACGTTAAGCGCACTTCTAAGTTCATGGCTCATGACGAGAACAACCAGTGCAATATTGGTGACAGGGTGAGAATTCAGTCCCATTTCTACTCCCCAATTAATTTTTTCTTTTTCATTCCAATTTAATCAACCATGTTTTCGACTCGATTTTGAGTTTCAGTTACAATATCGTGTAATTTGCTTGACTACACTGTAATACTGGATGAAATGGCTAATGTTCTCCGTATATTGAAGAATCTGGCATGTTTTCGCGAGTGTTCTTTGTGTTTGAAGAGTTTGTTCGTTCAATTTGCAAATGCATAATGTTCATTTATATTAATCTTGTCGCGTTTTTATTTCTCTGGAACTTGAACCGAGGGTACTTTAATATTTGAAAGTTTATAATTTCTAATCCACTGATGAAACAAATTGAATTTTATAATATCAGGTTAAACTAGACCCTTCTAGGCCGTTGAGCAAGCATAAACGTTGGGTGGTTGCTGAAATTTTGAGGAAAGCACGAATTTACCAACCACCATCACAAGAGAACCAGGTTGTTTCAGACAAAGGCAAAGTTTCAGCTCCTTCAACTACCTAAGGTTTGATTGAGACATTTGTTCGTTGTTTTATACTAAGCCAAACTTGTATTTTCTTTTTCTCTTTTTAATTTTTGGATTGTCTTATGAAATCATAATCACTTGAATACCTGATGACTATTTGTGTGATATTGTTGTTTAAACATTCTTTTGCCTCTATTTAGAGCACATTGCAGTTGATTACAAGAATACATCTTTAATGTTCTGTAAACAATATTTGATACTTAGCATCTTTCTTGATGGCATGATAGGTCCATGACTAGTTCTTGCTAATGTAATGACACAGCGCATCCAGCTAAGAAGATTTAGTAATAAAACTAAAATGAATTATTTTGGTAGTCTTGAAACTAATGTACTTAGGGTGGTGGCTTTCGCGCTACATTGACACATGTAATGTTTTACCTTGAATTGTTTTGTGGGAACTCAAGATGCCCTTCCCATGGTATTGTGATCATTTTTTTGGCGTTTGATGATTAGAGCCTTGTATTTTCTTTGCTTCATTAGGCTTCATTTAGGCATTTGTTTCATTTAAACGTTTGTTGTATCTTTTAATTTGGGGAAATTTGTATCCCCCCTCCCCGATAAAAAGGGAACATAACGATAGTAGTTATTGGAAGGTCCTTTCATAATAATTGATTTTATGTTCATTCTGCCCTCCAATTACTTGTTAATGTTTTGAATTATTCACCTTTTATCCAGATAATGCATTGCTTAGAATTCAGGGTTTTGATCAACCAGATAGCTGTCTTTAAAATACTTGTTGGTGATTGTTCAAATTTTTTATTTGAAGTTTGAGCTATAGGATGCTTGTCTTCCGAAAGTCCTATGTTGTTCCTAGCTATTGTGGTTGGAATAAGGTCAAAAACAATCTCTTTCACTTGTCATTTTAGAATTACTTGGAACCTTCAAAACCAACATGCATCAGGTAGCCATACACCAAAGATTTAAAATCATACAAGTTTGCTTGTCAACCAAATGTAGTGGGGTCAAATGGTTTGGACAGAAAACCGTCAATACCATGCTGGATTCTTTTGGAGGTTTAAATGGTATGATTGCATTAGCATGGTAAACTACACAGTGAGAGGGCTGAATCATGTGAATAAAATCAAGGTTAAAAGGAAAATTTAGTGGCTTTCTTTCAGTGAAAATAGAGTTTTCAAAGGTGCTGGTCCCAGCAACACTGTCCTTTTCTCCTCAGAGAGTTACATGGCTATTATGGAAACATGTCAGTGGATATTTGTTGATAGATGCTCTGTAATGTTCAACGAGTTTAATATACTATGCAAACCTTATATTCTCAATTAAAGGTGGAGAGGAAAGTTTCTTGGTCGTCCGAGGTTTCCTCAAAATAAGAAAAGGGAAATGGTTGATTTTATGAAGTCAAATCAATAGACTTTTCAACTTTTGACCACATTTCTTTGAAGGAGGAGATGTAAATACCTGTAGCACCTTGGATTCTTGAAAGTTGTAAGGTGCAAAGCAAACATTTTTCCGAAGGAGCTTTAAAGGTACTACTGTTTAATGAAGATTTAAATCTGTAGTACAAGTAGACATTTGAGAGATAGAGCTCACTGTGGTTTGGTTAGACACTTTATATAGTAATCTAATCCTAATTTTGTTATTGTCCAAGAAATAAAATTCAGAGAAGTTAATAGAAAATTAGTTGAATCTTCATGGAGTTCCAAGATCATTGCAAATGACTACTTTCAATGCATTGGGTCTATCGGGGCTTTTTTATTTTATTGAACAACCCTTATTTATGTTTTGATAGGTTTTCATGATTGTAACTGGGTCTTGGGAGTAATCTCAATGTGGTAAGATGATCGAGAGAATAATCTCAAGTAGTAATAGATTTACTTCCAGCATGAAGAATTCTATCTCTTTTTGACCCTCTAGAAAAGGAGGCCTTTTACATGGTCAAACATGAGAGCAAGCTCGTCTTTCTTGTTTGGTCAAATTCTTTCTCCTATGCTTTTCTGTACGAGTTTCTAAATTTTCATATGAGTGGGGTTGAATAGGAGCACATCTGACTATTATCCAATTTTCCTTGAAGTTGGTAATTTGGATGGGTGAACTCCCTTTCGTTTTGATTATGTTCAGTAGGTTCATGCTGAGTTCCTTCGTGTATGCAAAACATGGTGGAACCGTTTACTAGATATTAGGTTATTTGGGCCATTCTTCTATCTTAAAGCTGAAAGATCTAAAGGGAAAAATTAGAATGTGAAAGAAGAGTTTTGGAAATGTTAACAGTATTGCTACTCTGGATGCCTTAGATGAGGAAAGAAACTTATCTCAAAATGAAAGTAGCTCTACAACATTTATGAAAACAAATTGCTGAGATTATCCTCAAAGAGGATATGTTAGGAAGATCAAAGTGCCAACCAAAATGGCGAAAGAAGGGTGAGGAAAACTGTTACTTCTTTCACACTATAACTCCGCTACAAAGAAAAAGAGTTTCGTTTTGGAAATTCATTTGGAGGATGGCAGATGTCAGGTCATTGCTTAGCAAGTAGAAGGGAAATCAAATTTGCATCCTCTTCATCTTTATTTCCAAAGGGTCATAATTTAGTCCAATTTTTTTCCATTGGATACTGATTGGCTGTATATCCTATTGATAAGTTTTCGGGATGTTAACGACAAATGAGTTTTGTTTGTAAGGAATGGAGATTGGTGAAACTTAAATGAGCTCCATCTTATTGTCGTCAATGATTTTGGTTTGAACAAGGGAGAACTTCAATGAGCTTATCCCATTAATGATTTTGGTTTGAGTAAGAAATGGAAATTACTGAATATGATTTTTTTGTTTTTTTTTTTTTTGGTCCACAACTTTATGTATAAAGGCATTTTAAACTCTTAACATAAATGTGACCTTTTTTTCTTTAATTCCAAAAAATTTAGTGCCAAATGTTTGAGTTCAAGCCAATTTAGCCTTGCCTCCCATTTGCAGAAACTTTTCCTAATATGCTTTTTTGTTATCTTCCGGCTACTTTGTGTAGAGATCTGAGCTGAATATCCATAAAAGATGCCCCCAAACGTATCTTGACCTCAAGTGTTGCTTCTTGTTTAAGAATTATGTGGAAGGGAAGATTAGGATCATATGTTCTCGGGGTGCCCTTTGTTTCTATTTGGGAAGGTTTTGTGATAGTTTCAACTAATGGATTGTAGTCCCTACAAGATCTTGGATGATTCCTAACTTCTAGTAACACAAATATCTTTGTAGTAATTACCAATCTGAACATAGTTAGAGGCTTGAATCTCCACCCTTCATTTTTGTTGAACTTCTTATTTTTATTTATTTATTTTGCAGTAATAGGTCTGAACAGAAAATATTAGGTGCTTTGTTTTCAAGGTTTTCATGCTAGCTACCCTCTTAGGAGTTAGGTGGGATGAACTAGTAGATTCTTTAAAGATGAGTGATCCATGGATGATTCTGTAGTTAGCTATTGTTTTGCCTCTTCATGTGCCTTGTAATTTCCTTAAACAATCATTCAATTTTTTATGGTTCAACCTAATGGAACATTGCATGTATATAATTTCTTCACAACTCAGTTAAGTTGATTCCCTCTCCCTTCTATTGTTTTCTTTCATCAATGTGAACAACTGCTAATCTGTCTCACATTTATGCAAAGACTCTTACAAGAATATTTGTTTGCACATCAATTGATCAGGGGAAACTACTGCAAACCACATACGAGACCGAACCAGATAAAAAAAAAAAAACGAAATTGATCGAAAAAGCGAAGAACGAAATCTCTGGAAATGAACTACTACTGTAAGCAGTATGTATGTTTCTGATGCTAAAGATTTGTAGTTACATTAGCATTACGTTTTGTATTGATGTGTGAACCTATTTTTGTTCTCCCTATCAGGATTTATTTCCATAGTTTCTTTTTGTGAGGTTGTTGAAAGTGCATAATAAAGAACTCAAAAAGGTTTCATCTAATTTAATACTTGGATTGTGTTG

mRNA sequence

TTTTTATTTAATTTTCTCTATAATTTTCATCGCCTTGGCACGCGCACCAGTCATCGGACATCATAACCAACGTATCTCACCTTTCTAAACCCTACCACCCACTGTACGCCGCCCCGCCGCACGCCGTTCCTGCCCGATAGTTTCTAAACCCTCGAGTTTGCAGCAGCTTAGAGCTTAAAAGGGTTGTTGGGTTTTTTTTTAGGGGTTTCAATCTCAGGGGCAAGATGAAGCAGGTAGTGGGGATGGTGGTCTCAAATAAAATGCAGAAATCGGTGGTCGTTGCAGTGGACAGATTGTTTTATCACAAGCTCTATAATCGCTACGTTAAGCGCACTTCTAAGTTCATGGCTCATGACGAGAACAACCAGTGCAATATTGGTGACAGGGTTAAACTAGACCCTTCTAGGCCGTTGAGCAAGCATAAACGTTGGGTGGTTGCTGAAATTTTGAGGAAAGCACGAATTTACCAACCACCATCACAAGAGAACCAGGTTGTTTCAGACAAAGGCAAAGTTTCAGCTCCTTCAACTACCTAAGGGGAAACTACTGCAAACCACATACGAGACCGAACCAGATAAAAAAAAAAAAACGAAATTGATCGAAAAAGCGAAGAACGAAATCTCTGGAAATGAACTACTACTGTAAGCAGTATGTATGTTTCTGATGCTAAAGATTTGTAGTTACATTAGCATTACGTTTTGTATTGATGTGTGAACCTATTTTTGTTCTCCCTATCAGGATTTATTTCCATAGTTTCTTTTTGTGAGGTTGTTGAAAGTGCATAATAAAGAACTCAAAAAGGTTTCATCTAATTTAATACTTGGATTGTGTTG

Coding sequence (CDS)

ATGAAGCAGGTAGTGGGGATGGTGGTCTCAAATAAAATGCAGAAATCGGTGGTCGTTGCAGTGGACAGATTGTTTTATCACAAGCTCTATAATCGCTACGTTAAGCGCACTTCTAAGTTCATGGCTCATGACGAGAACAACCAGTGCAATATTGGTGACAGGGTTAAACTAGACCCTTCTAGGCCGTTGAGCAAGCATAAACGTTGGGTGGTTGCTGAAATTTTGAGGAAAGCACGAATTTACCAACCACCATCACAAGAGAACCAGGTTGTTTCAGACAAAGGCAAAGTTTCAGCTCCTTCAACTACCTAA
Homology
[Close]
BLAST of CmoCh04G010870 vs. Swiss-Prot
Match: RS17_DESAP (30S ribosomal protein S17 OS=Desulforudis audaxviator (strain MP104C) GN=rpsQ PE=3 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 2.2e-21
Identity = 49/75 (65.33%), Postives = 61/75 (81.33%), Query Frame = 1 

Query: 6  GMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSK 65
          G VVS+KM K+VVVAVD L  H LY R V+RT KFMAHDE+NQC IGD+VK+  +RPLS+
Sbjct: 11 GRVVSDKMDKTVVVAVDTLVKHPLYGRTVRRTRKFMAHDEDNQCRIGDKVKIAETRPLSR 70

Query: 66 HKRWVVAEILRKARI 81
          HKRW VAE+L +++I
Sbjct: 71 HKRWRVAEVLERSQI 85

[Close]
BLAST of CmoCh04G010870 vs. Swiss-Prot
Match: RS17_FERNB (30S ribosomal protein S17 OS=Fervidobacterium nodosum (strain ATCC 35602 / DSM 5306 / Rt17-B1) GN=rpsQ PE=3 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 1.5e-20
Identity = 48/94 (51.06%), Postives = 67/94 (71.28%), Query Frame = 1 

Query: 2  KQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSR 61
          K++VG+VVS+KM K+V V V+RL  H  + +YVKRT KF AHDENN C +GD V+++ SR
Sbjct: 4  KRLVGVVVSDKMDKTVTVKVERLVKHAKFGKYVKRTKKFYAHDENNACRVGDVVEIEESR 63

Query: 62 PLSKHKRWVVAEILRKARIYQPPSQENQVVSDKG 96
          PLSK KRWVV  IL ++++ + P  E  +  + G
Sbjct: 64 PLSKLKRWVVVNILERSKLSETPEIEETIDIEGG 97

[Close]
BLAST of CmoCh04G010870 vs. Swiss-Prot
Match: RS17_CALS4 (30S ribosomal protein S17 OS=Caldanaerobacter subterraneus subsp. tengcongensis (strain DSM 15242 / JCM 11007 / NBRC 100824 / MB4) GN=rpsQ PE=3 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 3.6e-19
Identity = 44/74 (59.46%), Postives = 57/74 (77.03%), Query Frame = 1 

Query: 5  VGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLS 64
          +G VVSNKMQK++VVAV+  F H LY + VKRT K+  HDENN CN+GD VK+  +RPLS
Sbjct: 10 IGTVVSNKMQKTIVVAVEDKFRHPLYGKIVKRTKKYKVHDENNICNVGDVVKIMETRPLS 69

Query: 65 KHKRWVVAEILRKA 79
          K KRW + E+++KA
Sbjct: 70 KEKRWRLVEVIKKA 83

[Close]
BLAST of CmoCh04G010870 vs. Swiss-Prot
Match: RS17_CALBD (30S ribosomal protein S17 OS=Caldicellulosiruptor bescii (strain ATCC BAA-1888 / DSM 6725 / Z-1320) GN=rpsQ PE=3 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 1.0e-18
Identity = 45/78 (57.69%), Postives = 60/78 (76.92%), Query Frame = 1 

Query: 2  KQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSR 61
          K  VG+VVS+KM K+VVVAV+R   H LY + +KRT+KF AHDENN+C +GD+V +  +R
Sbjct: 9  KTRVGVVVSDKMDKTVVVAVERHVQHPLYKKTIKRTTKFKAHDENNECRVGDKVLIMETR 68

Query: 62 PLSKHKRWVVAEILRKAR 80
          PLSK KRW V +IL +A+
Sbjct: 69 PLSKEKRWRVVQILERAK 86

[Close]
BLAST of CmoCh04G010870 vs. Swiss-Prot
Match: RS17_CALS8 (30S ribosomal protein S17 OS=Caldicellulosiruptor saccharolyticus (strain ATCC 43494 / DSM 8903 / Tp8T 6331) GN=rpsQ PE=3 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 1.0e-18
Identity = 44/78 (56.41%), Postives = 60/78 (76.92%), Query Frame = 1 

Query: 2  KQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSR 61
          K  +G+VVS+KM K+VVVAV+ L  H LY + +KRT+KF AHDENN+C +GD+V +  +R
Sbjct: 9  KTRIGVVVSDKMDKTVVVAVETLVQHPLYKKTIKRTTKFKAHDENNECRVGDKVLIMETR 68

Query: 62 PLSKHKRWVVAEILRKAR 80
          PLSK KRW V +IL +A+
Sbjct: 69 PLSKEKRWRVVQILERAK 86

[Close]
BLAST of CmoCh04G010870 vs. TrEMBL
Match: A0A067F623_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g034020mg PE=3 SV=1)

HSP 1 Score: 159.8 bits (403), Expect = 1.7e-36
Identity = 77/88 (87.50%), Postives = 83/88 (94.32%), Query Frame = 1 

Query: 1  MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPS 60
          MK VVG+VVSNKMQKSVVVAVDRLF+HK+YNRYVKRTSKFMAHDENNQCNIGDRV+LDPS
Sbjct: 1  MKSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVRLDPS 60

Query: 61 RPLSKHKRWVVAEILRKARIYQPPSQEN 89
          RPLSKHK W VAEIL+KARIY PPS +N
Sbjct: 61 RPLSKHKHWAVAEILKKARIYVPPSADN 88

[Close]
BLAST of CmoCh04G010870 vs. TrEMBL
Match: V4RMK3_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10006280mg PE=3 SV=1)

HSP 1 Score: 159.8 bits (403), Expect = 1.7e-36
Identity = 77/88 (87.50%), Postives = 83/88 (94.32%), Query Frame = 1 

Query: 1  MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPS 60
          MK VVG+VVSNKMQKSVVVAVDRLF+HK+YNRYVKRTSKFMAHDENNQCNIGDRV+LDPS
Sbjct: 1  MKSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVRLDPS 60

Query: 61 RPLSKHKRWVVAEILRKARIYQPPSQEN 89
          RPLSKHK W VAEIL+KARIY PPS +N
Sbjct: 61 RPLSKHKHWAVAEILKKARIYVPPSADN 88

[Close]
BLAST of CmoCh04G010870 vs. TrEMBL
Match: V4UQ21_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10009986mg PE=3 SV=1)

HSP 1 Score: 159.5 bits (402), Expect = 2.3e-36
Identity = 80/102 (78.43%), Postives = 89/102 (87.25%), Query Frame = 1 

Query: 1   MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPS 60
           MK VVG+VVSNKMQKSVVVAVDRLF+HK+YNRYVKRTSKFMAHDENN+CNIGDRV+LDPS
Sbjct: 1   MKSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNECNIGDRVRLDPS 60

Query: 61  RPLSKHKRWVVAEILRKARIYQPPSQENQVVSDKGKVSAPST 103
           RPLSKHK W+VAEIL+KARIY PPS +N   +    VS P T
Sbjct: 61  RPLSKHKHWLVAEILKKARIYVPPSADNAAAA---AVSNPET 99

[Close]
BLAST of CmoCh04G010870 vs. TrEMBL
Match: A0A067G192_CITSI (Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g041511mg PE=3 SV=1)

HSP 1 Score: 159.5 bits (402), Expect = 2.3e-36
Identity = 80/102 (78.43%), Postives = 89/102 (87.25%), Query Frame = 1 

Query: 1   MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPS 60
           MK VVG+VVSNKMQKSVVVAVDRLF+HK+YNRYVKRTSKFMAHDENN+CNIGDRV+LDPS
Sbjct: 42  MKSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNECNIGDRVRLDPS 101

Query: 61  RPLSKHKRWVVAEILRKARIYQPPSQENQVVSDKGKVSAPST 103
           RPLSKHK W+VAEIL+KARIY PPS +N   +    VS P T
Sbjct: 102 RPLSKHKHWLVAEILKKARIYVPPSADNAAAA---AVSNPET 140

[Close]
BLAST of CmoCh04G010870 vs. TrEMBL
Match: W1PYJ6_AMBTC (Uncharacterized protein OS=Amborella trichopoda GN=AMTR_s00025p00218070 PE=3 SV=1)

HSP 1 Score: 157.9 bits (398), Expect = 6.5e-36
Identity = 76/86 (88.37%), Postives = 83/86 (96.51%), Query Frame = 1 

Query: 1  MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPS 60
          MK VVGMVVSNKMQKSVVVAVDRLF+HK+YNRYVKRTSKFMAHDENN+CN+GDRV+LDPS
Sbjct: 1  MKPVVGMVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNECNMGDRVRLDPS 60

Query: 61 RPLSKHKRWVVAEILRKARIYQPPSQ 87
          RPLSKHK WVVAEIL+KARIY PP+Q
Sbjct: 61 RPLSKHKHWVVAEILKKARIYVPPTQ 86

[Close]
BLAST of CmoCh04G010870 vs. TAIR10
Match: AT1G49400.1 (AT1G49400.1 Nucleic acid-binding, OB-fold-like protein)

HSP 1 Score: 142.9 bits (359), Expect = 1.1e-34
Identity = 73/103 (70.87%), Postives = 85/103 (82.52%), Query Frame = 1 

Query: 1   MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPS 60
           MK V+G VVSNKMQKSVVVAVDRLF++K+YNRYVKRTSKFMAHD+ + CNIGDRVKLDPS
Sbjct: 1   MKPVIGTVVSNKMQKSVVVAVDRLFHNKIYNRYVKRTSKFMAHDDKDACNIGDRVKLDPS 60

Query: 61  RPLSKHKRWVVAEILRKARIYQPPSQENQVVSDKGKVSAPSTT 104
           RPLSK+K W+VAEI++KARIY P +     VS     S+ STT
Sbjct: 61  RPLSKNKHWIVAEIIKKARIYSPKAAA-AAVSASASASSASTT 102

[Close]
BLAST of CmoCh04G010870 vs. TAIR10
Match: AT3G18880.1 (AT3G18880.1 Nucleic acid-binding, OB-fold-like protein)

HSP 1 Score: 139.8 bits (351), Expect = 9.3e-34
Identity = 66/83 (79.52%), Postives = 75/83 (90.36%), Query Frame = 1 

Query: 1  MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPS 60
          MK V+G VVSNKMQ SVVVAVDRLF++ +YNRYVKRTSKFMAHDE + CNIGDRVKLDPS
Sbjct: 1  MKAVIGTVVSNKMQMSVVVAVDRLFHNNIYNRYVKRTSKFMAHDEKDSCNIGDRVKLDPS 60

Query: 61 RPLSKHKRWVVAEILRKARIYQP 84
          RPLSKHK W+V+EI++KARIY P
Sbjct: 61 RPLSKHKHWIVSEIIKKARIYSP 83

[Close]
BLAST of CmoCh04G010870 vs. TAIR10
Match: AT1G79850.1 (AT1G79850.1 ribosomal protein S17)

HSP 1 Score: 60.5 bits (145), Expect = 7.2e-10
Identity = 33/78 (42.31%), Postives = 46/78 (58.97%), Query Frame = 1 

Query: 1   MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPS 60
           MK + G VV     K+V V V RL  H  Y R V+   K+ AHD +NQ  +GD V+L+ S
Sbjct: 50  MKTMQGRVVCATSDKTVAVEVVRLAPHPKYKRRVRMKKKYQAHDPDNQFKVGDVVRLEKS 109

Query: 61  RPLSKHKRWVVAEILRKA 79
           RP+SK K +V   ++ +A
Sbjct: 110 RPISKTKSFVALPVIARA 127

[Close]
BLAST of CmoCh04G010870 vs. NCBI nr
Match: gi|449438753|ref|XP_004137152.1| (PREDICTED: 30S ribosomal protein S17, chloroplastic [Cucumis sativus])

HSP 1 Score: 191.4 bits (485), Expect = 7.7e-46
Identity = 96/103 (93.20%), Postives = 98/103 (95.15%), Query Frame = 1 

Query: 1   MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPS 60
           MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPS
Sbjct: 1   MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPS 60

Query: 61  RPLSKHKRWVVAEILRKARIYQPPSQENQVVSDKGKVSAPSTT 104
           RPLSKHK WVVAEILRKARIY+PPSQ+ Q VSDK  VSAPSTT
Sbjct: 61  RPLSKHKHWVVAEILRKARIYEPPSQDKQSVSDKSNVSAPSTT 103

[Close]
BLAST of CmoCh04G010870 vs. NCBI nr
Match: gi|567859160|ref|XP_006422263.1| (hypothetical protein CICLE_v10006280mg [Citrus clementina])

HSP 1 Score: 159.8 bits (403), Expect = 2.5e-36
Identity = 77/88 (87.50%), Postives = 83/88 (94.32%), Query Frame = 1 

Query: 1  MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPS 60
          MK VVG+VVSNKMQKSVVVAVDRLF+HK+YNRYVKRTSKFMAHDENNQCNIGDRV+LDPS
Sbjct: 1  MKSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVRLDPS 60

Query: 61 RPLSKHKRWVVAEILRKARIYQPPSQEN 89
          RPLSKHK W VAEIL+KARIY PPS +N
Sbjct: 61 RPLSKHKHWAVAEILKKARIYVPPSADN 88

[Close]
BLAST of CmoCh04G010870 vs. NCBI nr
Match: gi|641854574|gb|KDO73368.1| (hypothetical protein CISIN_1g041511mg, partial [Citrus sinensis])

HSP 1 Score: 159.5 bits (402), Expect = 3.2e-36
Identity = 80/102 (78.43%), Postives = 89/102 (87.25%), Query Frame = 1 

Query: 1   MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPS 60
           MK VVG+VVSNKMQKSVVVAVDRLF+HK+YNRYVKRTSKFMAHDENN+CNIGDRV+LDPS
Sbjct: 42  MKSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNECNIGDRVRLDPS 101

Query: 61  RPLSKHKRWVVAEILRKARIYQPPSQENQVVSDKGKVSAPST 103
           RPLSKHK W+VAEIL+KARIY PPS +N   +    VS P T
Sbjct: 102 RPLSKHKHWLVAEILKKARIYVPPSADNAAAA---AVSNPET 140

[Close]
BLAST of CmoCh04G010870 vs. NCBI nr
Match: gi|567922298|ref|XP_006453155.1| (hypothetical protein CICLE_v10009986mg [Citrus clementina])

HSP 1 Score: 159.5 bits (402), Expect = 3.2e-36
Identity = 80/102 (78.43%), Postives = 89/102 (87.25%), Query Frame = 1 

Query: 1   MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPS 60
           MK VVG+VVSNKMQKSVVVAVDRLF+HK+YNRYVKRTSKFMAHDENN+CNIGDRV+LDPS
Sbjct: 1   MKSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNECNIGDRVRLDPS 60

Query: 61  RPLSKHKRWVVAEILRKARIYQPPSQENQVVSDKGKVSAPST 103
           RPLSKHK W+VAEIL+KARIY PPS +N   +    VS P T
Sbjct: 61  RPLSKHKHWLVAEILKKARIYVPPSADNAAAA---AVSNPET 99

[Close]
BLAST of CmoCh04G010870 vs. NCBI nr
Match: gi|743815428|ref|XP_011019937.1| (PREDICTED: 30S ribosomal protein S17, chloroplastic-like [Populus euphratica])

HSP 1 Score: 158.3 bits (399), Expect = 7.2e-36
Identity = 80/103 (77.67%), Postives = 87/103 (84.47%), Query Frame = 1 

Query: 1   MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPS 60
           MK VVGMVVSNKMQKSVVVAVDRLF+HKLYNRYVKRTSKFMAHDENN CNIGDRV+LDPS
Sbjct: 1   MKSVVGMVVSNKMQKSVVVAVDRLFHHKLYNRYVKRTSKFMAHDENNLCNIGDRVRLDPS 60

Query: 61  RPLSKHKRWVVAEILRKARIYQPPSQENQVVSDKGKVSAPSTT 104
           RPLSK K WVVAEIL+KARIY PPS  +   S      AP+++
Sbjct: 61  RPLSKRKNWVVAEILKKARIYVPPSAADNAASKTKGAEAPTSS 103

The following BLAST results are available for this feature:
BLAST of CmoCh04G010870 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RS17_DESAP2.2e-2165.3330S ribosomal protein S17 OS=Desulforudis audaxviator (strain MP104C) GN=rpsQ PE... [more]
RS17_FERNB1.5e-2051.0630S ribosomal protein S17 OS=Fervidobacterium nodosum (strain ATCC 35602 / DSM 5... [more]
RS17_CALS43.6e-1959.4630S ribosomal protein S17 OS=Caldanaerobacter subterraneus subsp. tengcongensis ... [more]
RS17_CALBD1.0e-1857.6930S ribosomal protein S17 OS=Caldicellulosiruptor bescii (strain ATCC BAA-1888 /... [more]
RS17_CALS81.0e-1856.4130S ribosomal protein S17 OS=Caldicellulosiruptor saccharolyticus (strain ATCC 4... [more]
BLAST of CmoCh04G010870 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A067F623_CITSI1.7e-3687.50Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g034020mg PE=3 SV=1[more]
V4RMK3_9ROSI1.7e-3687.50Uncharacterized protein OS=Citrus clementina GN=CICLE_v10006280mg PE=3 SV=1[more]
V4UQ21_9ROSI2.3e-3678.43Uncharacterized protein OS=Citrus clementina GN=CICLE_v10009986mg PE=3 SV=1[more]
A0A067G192_CITSI2.3e-3678.43Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g041511mg PE=3 S... [more]
W1PYJ6_AMBTC6.5e-3688.37Uncharacterized protein OS=Amborella trichopoda GN=AMTR_s00025p00218070 PE=3 SV=... [more]
BLAST of CmoCh04G010870 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G49400.11.1e-3470.87 Nucleic acid-binding, OB-fold-like protein[more]
AT3G18880.19.3e-3479.52 Nucleic acid-binding, OB-fold-like protein[more]
AT1G79850.17.2e-1042.31 ribosomal protein S17[more]
BLAST of CmoCh04G010870 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449438753|ref|XP_004137152.1|7.7e-4693.20PREDICTED: 30S ribosomal protein S17, chloroplastic [Cucumis sativus][more]
gi|567859160|ref|XP_006422263.1|2.5e-3687.50hypothetical protein CICLE_v10006280mg [Citrus clementina][more]
gi|641854574|gb|KDO73368.1|3.2e-3678.43hypothetical protein CISIN_1g041511mg, partial [Citrus sinensis][more]
gi|567922298|ref|XP_006453155.1|3.2e-3678.43hypothetical protein CICLE_v10009986mg [Citrus clementina][more]
gi|743815428|ref|XP_011019937.1|7.2e-3677.67PREDICTED: 30S ribosomal protein S17, chloroplastic-like [Populus euphratica][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR000266Ribosomal_S17/S11
IPR012340NA-bd_OB-fold
IPR019984Ribosomal_S17
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
GO:0005840ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0051252 regulation of RNA metabolic process
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0090502 RNA phosphodiester bond hydrolysis, endonucleolytic
biological_process GO:0006412 translation
cellular_component GO:0005840 ribosome
cellular_component GO:0005622 intracellular
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0004523 RNA-DNA hybrid ribonuclease activity
molecular_function GO:0003735 structural constituent of ribosome
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh04G010870.1CmoCh04G010870.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000266Ribosomal protein S17/S11PRODOMPD001295coord: 4..71
score: 1.0
IPR000266Ribosomal protein S17/S11PRINTSPR00973RIBOSOMALS17coord: 52..62
score: 2.0E-11coord: 62..69
score: 2.0E-11coord: 20..43
score: 2.0
IPR000266Ribosomal protein S17/S11HAMAPMF_01345_BRibosomal_S17_Bcoord: 1..77
score: 22
IPR000266Ribosomal protein S17/S11PANTHERPTHR1074440S RIBOSOMAL PROTEIN S11 FAMILY MEMBERcoord: 1..84
score: 4.0
IPR000266Ribosomal protein S17/S11PFAMPF00366Ribosomal_S17coord: 6..73
score: 1.5
IPR012340Nucleic acid-binding, OB-foldGENE3DG3DSA:2.40.50.140coord: 2..89
score: 3.3
IPR012340Nucleic acid-binding, OB-foldunknownSSF50249Nucleic acid-binding proteinscoord: 2..86
score: 2.06
IPR019984Ribosomal protein S17, bacterial-typeTIGRFAMsTIGR03635TIGR03635coord: 2..71
score: 3.5

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh04G010870CmaCh04G010080Cucurbita maxima (Rimu)cmacmoB728
CmoCh04G010870Cla011721Watermelon (97103) v1cmowmB689
CmoCh04G010870MELO3C026421Melon (DHL92) v3.5.1cmomeB637
CmoCh04G010870ClCG07G006010Watermelon (Charleston Gray)cmowcgB675
CmoCh04G010870Lsi04G011240Bottle gourd (USVL1VR-Ls)cmolsiB672
CmoCh04G010870Cp4.1LG01g07530Cucurbita pepo (Zucchini)cmocpeB673
CmoCh04G010870MELO3C026421.2Melon (DHL92) v3.6.1cmomedB726
CmoCh04G010870Cla97C07G134100Watermelon (97103) v2cmowmbB754
CmoCh04G010870Bhi07G000306Wax gourdcmowgoB0888
CmoCh04G010870Carg00120Silver-seed gourdcarcmoB0923
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh04G010870Cucurbita moschata (Rifu)cmocmoB464
CmoCh04G010870Cucurbita maxima (Rimu)cmacmoB730
CmoCh04G010870Cucurbita pepo (Zucchini)cmocpeB675
CmoCh04G010870Silver-seed gourdcarcmoB0251