Carg00120 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg00120
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	30S ribosomal protein S17-like
Location	Cucurbita_argyrosperma_scaffold_001 : 607640 .. 608733 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ACATTCTATTTTTTATTTAATTTTCTCTATAATTTTCATCGCCTTGGCACGTGCACCAGTCATCGGACATCATAACCAACGTATCTCACCTTTCTAAACCCTACCACCCACTGTACTCCGCCCCGCCGCACGCCGTTCCTGCCCGATAGTTTCTAAATCCTCGAGTTTGCAGCAGCTTAGAGCTTAAAAGGGTTGTTGGGTTTTTTTTAGGGGTTTCAATCTCAGGGGCAAGATGAAGCAGGTAGTGGGGATGGTGGTCTCAAATAAAATGCAGAAATCGGTGGTCGTTGCAGTGGACAGATTGTTTTATCACAAGCTCTATAATCGCTACGTTAAGCGCACTTCTAAGTTCATGGCTCATGACGAGAACAACCAGTGCAATATTGGTGACAGGGTGAGAATTCAGTCCCATTTCTACTCCCCAATTAATTTTTTCTTTTTCATTCCAATTTAATCAACCATGTTTTCGACTCGATTTTGAGTTTCAGTTACAATATCGTGTAATTTGCTTGACTACACTGTAATACTGGATGAAATGGCTAATGTTCTCCGTATATTGAAGAATCTCGCATGTTTTCGCGAGTGTTCTTTGTGTTTGAAGAGTTTGTTCGTTCAATTTGCAAATGCATAATGTTCATTTATATTAATCTTGTCGCGTTTTTATTTCTCTGGAACTTGAACCGAGGGTACTTTAATATTTGAACGTTTATAATTTCTAATCCACTGATGAAACAAATTGAATTTTATAATATCAGGTTAAACTAGACCCTTCTAGGCCGTTGAGCAAGCATAAACGTTGGGTGGTTGCTGAAATTTTGAGGAAAGCACGAATTTACCAACCACCATCACAAGAGAACCAGGTTGTTTCAGACAAAGGCAAAGTTTCAGCTCCTTCAACTACCTAAGGTTTGATTGAGACATTTGTTCGTTGTTTTATACTAAGCCAAACTTGTATTTTCTTTTTCTCTTTTTAATTTTTGGATTGTCTTATGAAATCATAATCACTTGAATACCTGATGACTATTTGTGTGATATTGTTGTTTAAACATTCTTTTGCCTCTATTTAGAGCACATTGCAGTTGATTACAAGAATA

mRNA sequence

ACATTCTATTTTTTATTTAATTTTCTCTATAATTTTCATCGCCTTGGCACGTGCACCAGTCATCGGACATCATAACCAACGTATCTCACCTTTCTAAACCCTACCACCCACTGTACTCCGCCCCGCCGCACGCCGTTCCTGCCCGATAGTTTCTAAATCCTCGAGTTTGCAGCAGCTTAGAGCTTAAAAGGGTTGTTGGGTTTTTTTTAGGGGTTTCAATCTCAGGGGCAAGATGAAGCAGGTAGTGGGGATGGTGGTCTCAAATAAAATGCAGAAATCGGTGGTCGTTGCAGTGGACAGATTGTTTTATCACAAGCTCTATAATCGCTACGTTAAGCGCACTTCTAAGTTCATGGCTCATGACGAGAACAACCAGTGCAATATTGGTGACAGGGTTAAACTAGACCCTTCTAGGCCGTTGAGCAAGCATAAACGTTGGGTGGTTGCTGAAATTTTGAGGAAAGCACGAATTTACCAACCACCATCACAAGAGAACCAGGTTGTTTCAGACAAAGGCAAAGTTTCAGCTCCTTCAACTACCTAAGGTTTGATTGAGACATTTGTTCGTTGTTTTATACTAAGCCAAACTTGTATTTTCTTTTTCTCTTTTTAATTTTTGGATTGTCTTATGAAATCATAATCACTTGAATACCTGATGACTATTTGTGTGATATTGTTGTTTAAACATTCTTTTGCCTCTATTTAGAGCACATTGCAGTTGATTACAAGAATA

Coding sequence (CDS)

ATGAAGCAGGTAGTGGGGATGGTGGTCTCAAATAAAATGCAGAAATCGGTGGTCGTTGCAGTGGACAGATTGTTTTATCACAAGCTCTATAATCGCTACGTTAAGCGCACTTCTAAGTTCATGGCTCATGACGAGAACAACCAGTGCAATATTGGTGACAGGGTTAAACTAGACCCTTCTAGGCCGTTGAGCAAGCATAAACGTTGGGTGGTTGCTGAAATTTTGAGGAAAGCACGAATTTACCAACCACCATCACAAGAGAACCAGGTTGTTTCAGACAAAGGCAAAGTTTCAGCTCCTTCAACTACCTAA

Protein sequence

MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKHKRWVVAEILRKARIYQPPSQENQVVSDKGKVSAPSTT

Homology

[Close]

BLAST of Carg00120 vs. NCBI nr
Match: XP_022943007.1 (uncharacterized protein LOC111447872 [Cucurbita moschata] >XP_022943008.1 uncharacterized protein LOC111447872 [Cucurbita moschata] >XP_023549349.1 uncharacterized protein LOC111807726 isoform X1 [Cucurbita pepo subsp. pepo] >XP_023549358.1 uncharacterized protein LOC111807726 isoform X1 [Cucurbita pepo subsp. pepo] >XP_023549366.1 uncharacterized protein LOC111807726 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 204.5 bits (519), Expect = 1.7e-49
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 0


Query: 1   MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPS 60
           MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPS
Sbjct: 1   MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPS 60

Query: 61  RPLSKHKRWVVAEILRKARIYQPPSQENQVVSDKGKVSAPSTT 104
           RPLSKHKRWVVAEILRKARIYQPPSQENQVVSDKGKVSAPSTT
Sbjct: 61  RPLSKHKRWVVAEILRKARIYQPPSQENQVVSDKGKVSAPSTT 103

[Close]

BLAST of Carg00120 vs. NCBI nr
Match: XP_022989005.1 (uncharacterized protein LOC111486195 [Cucurbita maxima] >XP_022989013.1 uncharacterized protein LOC111486195 [Cucurbita maxima])

HSP 1 Score: 203.4 bits (516), Expect = 3.8e-49
Identity = 102/103 (99.03%), Postives = 103/103 (100.00%), Query Frame = 0


Query: 1   MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPS 60
           MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPS
Sbjct: 1   MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPS 60

Query: 61  RPLSKHKRWVVAEILRKARIYQPPSQENQVVSDKGKVSAPSTT 104
           RPLSKHKRWVVAEILRKARIY+PPSQENQVVSDKGKVSAPSTT
Sbjct: 61  RPLSKHKRWVVAEILRKARIYEPPSQENQVVSDKGKVSAPSTT 103

[Close]

BLAST of Carg00120 vs. NCBI nr
Match: XP_004137152.1 (PREDICTED: 30S ribosomal protein S17, chloroplastic [Cucumis sativus] >XP_011653397.1 PREDICTED: 30S ribosomal protein S17, chloroplastic [Cucumis sativus])

HSP 1 Score: 191.4 bits (485), Expect = 1.5e-45
Identity = 96/103 (93.20%), Postives = 98/103 (95.15%), Query Frame = 0


Query: 1   MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPS 60
           MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPS
Sbjct: 1   MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPS 60

Query: 61  RPLSKHKRWVVAEILRKARIYQPPSQENQVVSDKGKVSAPSTT 104
           RPLSKHK WVVAEILRKARIY+PPSQ+ Q VSDK  VSAPSTT
Sbjct: 61  RPLSKHKHWVVAEILRKARIYEPPSQDKQSVSDKSNVSAPSTT 103

[Close]

BLAST of Carg00120 vs. NCBI nr
Match: XP_016903240.1 (PREDICTED: 30S ribosomal protein S17-like [Cucumis melo])

HSP 1 Score: 191.4 bits (485), Expect = 1.5e-45
Identity = 96/103 (93.20%), Postives = 98/103 (95.15%), Query Frame = 0


Query: 1   MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPS 60
           MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPS
Sbjct: 1   MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPS 60

Query: 61  RPLSKHKRWVVAEILRKARIYQPPSQENQVVSDKGKVSAPSTT 104
           RPLSK K WVVAEILRKARIY+PPSQ+NQ VSDK  VSAPSTT
Sbjct: 61  RPLSKRKHWVVAEILRKARIYEPPSQDNQTVSDKSNVSAPSTT 103

[Close]

BLAST of Carg00120 vs. NCBI nr
Match: XP_022155383.1 (uncharacterized protein LOC111022528 [Momordica charantia])

HSP 1 Score: 186.8 bits (473), Expect = 3.7e-44
Identity = 93/103 (90.29%), Postives = 97/103 (94.17%), Query Frame = 0


Query: 1   MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPS 60
           MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPS
Sbjct: 1   MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPS 60

Query: 61  RPLSKHKRWVVAEILRKARIYQPPSQENQVVSDKGKVSAPSTT 104
           RPLSKHK W+VAEILRKARIY PPSQ++Q  SDK K +APSTT
Sbjct: 61  RPLSKHKHWMVAEILRKARIYVPPSQDSQTSSDKSKAAAPSTT 103

[Close]

BLAST of Carg00120 vs. TAIR10
Match: AT1G49400.1 (Nucleic acid-binding, OB-fold-like protein)

HSP 1 Score: 141.0 bits (354), Expect = 4.2e-34
Identity = 67/83 (80.72%), Postives = 77/83 (92.77%), Query Frame = 0


Query: 1  MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPS 60
          MK V+G VVSNKMQKSVVVAVDRLF++K+YNRYVKRTSKFMAHD+ + CNIGDRVKLDPS
Sbjct: 1  MKPVIGTVVSNKMQKSVVVAVDRLFHNKIYNRYVKRTSKFMAHDDKDACNIGDRVKLDPS 60

Query: 61 RPLSKHKRWVVAEILRKARIYQP 84
          RPLSK+K W+VAEI++KARIY P
Sbjct: 61 RPLSKNKHWIVAEIIKKARIYSP 83

[Close]

BLAST of Carg00120 vs. TAIR10
Match: AT3G18880.1 (Nucleic acid-binding, OB-fold-like protein)

HSP 1 Score: 139.8 bits (351), Expect = 9.3e-34
Identity = 66/83 (79.52%), Postives = 75/83 (90.36%), Query Frame = 0


Query: 1  MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPS 60
          MK V+G VVSNKMQ SVVVAVDRLF++ +YNRYVKRTSKFMAHDE + CNIGDRVKLDPS
Sbjct: 1  MKAVIGTVVSNKMQMSVVVAVDRLFHNNIYNRYVKRTSKFMAHDEKDSCNIGDRVKLDPS 60

Query: 61 RPLSKHKRWVVAEILRKARIYQP 84
          RPLSKHK W+V+EI++KARIY P
Sbjct: 61 RPLSKHKHWIVSEIIKKARIYSP 83

[Close]

BLAST of Carg00120 vs. TAIR10
Match: AT1G79850.1 (ribosomal protein S17)

HSP 1 Score: 60.5 bits (145), Expect = 7.2e-10
Identity = 33/78 (42.31%), Postives = 46/78 (58.97%), Query Frame = 0


Query: 1   MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPS 60
           MK + G VV     K+V V V RL  H  Y R V+   K+ AHD +NQ  +GD V+L+ S
Sbjct: 50  MKTMQGRVVCATSDKTVAVEVVRLAPHPKYKRRVRMKKKYQAHDPDNQFKVGDVVRLEKS 109

Query: 61  RPLSKHKRWVVAEILRKA 79
           RP+SK K +V   ++ +A
Sbjct: 110 RPISKTKSFVALPVIARA 127

[Close]

BLAST of Carg00120 vs. TAIR10
Match: AT4G30800.1 (Nucleic acid-binding, OB-fold-like protein)

HSP 1 Score: 44.3 bits (103), Expect = 5.3e-05
Identity = 28/71 (39.44%), Postives = 39/71 (54.93%), Query Frame = 0


Query: 6   GMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAH-DENNQCNIGDRVKLDPSRPLS 65
           G   S KMQ++++V  D L + K Y RY KR S   AH     +   GDRV +   RPLS
Sbjct: 74  GTCHSAKMQRTIIVRRDYLHFVKKYRRYEKRHSNIPAHVSPCFRVKEGDRVTIGQCRPLS 133

Query: 66  KHKRWVVAEIL 76
           K  R+ V +++
Sbjct: 134 KTVRFNVLKVI 144

[Close]

BLAST of Carg00120 vs. TAIR10
Match: AT3G48930.1 (Nucleic acid-binding, OB-fold-like protein)

HSP 1 Score: 40.4 bits (93), Expect = 7.7e-04
Identity = 26/73 (35.62%), Postives = 39/73 (53.42%), Query Frame = 0


Query: 4   VVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAH-DENNQCNIGDRVKLDPSRP 63
           + G   S KMQ++++V  D L + K Y RY KR S   AH     +   GD + +   RP
Sbjct: 72  LAGTCHSAKMQRTIIVRRDYLHFVKKYQRYEKRHSNIPAHVSPCFRVKEGDHIIIGQCRP 131

Query: 64  LSKHKRWVVAEIL 76
           LSK  R+ V +++
Sbjct: 132 LSKTVRFNVLKVI 144

[Close]

BLAST of Carg00120 vs. Swiss-Prot
Match: sp|B1I1J7|RS17_DESAP (30S ribosomal protein S17 OS=Desulforudis audaxviator (strain MP104C) OX=477974 GN=rpsQ PE=3 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 2.3e-21
Identity = 49/75 (65.33%), Postives = 61/75 (81.33%), Query Frame = 0


Query: 6  GMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSK 65
          G VVS+KM K+VVVAVD L  H LY R V+RT KFMAHDE+NQC IGD+VK+  +RPLS+
Sbjct: 11 GRVVSDKMDKTVVVAVDTLVKHPLYGRTVRRTRKFMAHDEDNQCRIGDKVKIAETRPLSR 70

Query: 66 HKRWVVAEILRKARI 81
          HKRW VAE+L +++I
Sbjct: 71 HKRWRVAEVLERSQI 85

[Close]

BLAST of Carg00120 vs. Swiss-Prot
Match: sp|A7HM43|RS17_FERNB (30S ribosomal protein S17 OS=Fervidobacterium nodosum (strain ATCC 35602 / DSM 5306 / Rt17-B1) OX=381764 GN=rpsQ PE=3 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 1.5e-20
Identity = 48/94 (51.06%), Postives = 67/94 (71.28%), Query Frame = 0


Query: 2  KQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSR 61
          K++VG+VVS+KM K+V V V+RL  H  + +YVKRT KF AHDENN C +GD V+++ SR
Sbjct: 4  KRLVGVVVSDKMDKTVTVKVERLVKHAKFGKYVKRTKKFYAHDENNACRVGDVVEIEESR 63

Query: 62 PLSKHKRWVVAEILRKARIYQPPSQENQVVSDKG 96
          PLSK KRWVV  IL ++++ + P  E  +  + G
Sbjct: 64 PLSKLKRWVVVNILERSKLSETPEIEETIDIEGG 97

[Close]

BLAST of Carg00120 vs. Swiss-Prot
Match: sp|Q8R7W3|RS17_CALS4 (30S ribosomal protein S17 OS=Caldanaerobacter subterraneus subsp. tengcongensis (strain DSM 15242 / JCM 11007 / NBRC 100824 / MB4) OX=273068 GN=rpsQ PE=3 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 3.6e-19
Identity = 44/74 (59.46%), Postives = 57/74 (77.03%), Query Frame = 0


Query: 5  VGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLS 64
          +G VVSNKMQK++VVAV+  F H LY + VKRT K+  HDENN CN+GD VK+  +RPLS
Sbjct: 10 IGTVVSNKMQKTIVVAVEDKFRHPLYGKIVKRTKKYKVHDENNICNVGDVVKIMETRPLS 69

Query: 65 KHKRWVVAEILRKA 79
          K KRW + E+++KA
Sbjct: 70 KEKRWRLVEVIKKA 83

[Close]

BLAST of Carg00120 vs. Swiss-Prot
Match: sp|B9MKH2|RS17_CALBD (30S ribosomal protein S17 OS=Caldicellulosiruptor bescii (strain ATCC BAA-1888 / DSM 6725 / Z-1320) OX=521460 GN=rpsQ PE=3 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 1.1e-18
Identity = 45/78 (57.69%), Postives = 60/78 (76.92%), Query Frame = 0


Query: 2  KQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSR 61
          K  VG+VVS+KM K+VVVAV+R   H LY + +KRT+KF AHDENN+C +GD+V +  +R
Sbjct: 9  KTRVGVVVSDKMDKTVVVAVERHVQHPLYKKTIKRTTKFKAHDENNECRVGDKVLIMETR 68

Query: 62 PLSKHKRWVVAEILRKAR 80
          PLSK KRW V +IL +A+
Sbjct: 69 PLSKEKRWRVVQILERAK 86

[Close]

BLAST of Carg00120 vs. Swiss-Prot
Match: sp|A4XLS1|RS17_CALS8 (30S ribosomal protein S17 OS=Caldicellulosiruptor saccharolyticus (strain ATCC 43494 / DSM 8903 / Tp8T 6331) OX=351627 GN=rpsQ PE=3 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 1.1e-18
Identity = 44/78 (56.41%), Postives = 60/78 (76.92%), Query Frame = 0


Query: 2  KQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSR 61
          K  +G+VVS+KM K+VVVAV+ L  H LY + +KRT+KF AHDENN+C +GD+V +  +R
Sbjct: 9  KTRIGVVVSDKMDKTVVVAVETLVQHPLYKKTIKRTTKFKAHDENNECRVGDKVLIMETR 68

Query: 62 PLSKHKRWVVAEILRKAR 80
          PLSK KRW V +IL +A+
Sbjct: 69 PLSKEKRWRVVQILERAK 86

[Close]

BLAST of Carg00120 vs. TrEMBL
Match: tr|A0A1S4E5I9|A0A1S4E5I9_CUCME (30S ribosomal protein S17-like OS=Cucumis melo OX=3656 GN=LOC107992092 PE=3 SV=1)

HSP 1 Score: 191.4 bits (485), Expect = 9.9e-46
Identity = 96/103 (93.20%), Postives = 98/103 (95.15%), Query Frame = 0


Query: 1   MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPS 60
           MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPS
Sbjct: 1   MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPS 60

Query: 61  RPLSKHKRWVVAEILRKARIYQPPSQENQVVSDKGKVSAPSTT 104
           RPLSK K WVVAEILRKARIY+PPSQ+NQ VSDK  VSAPSTT
Sbjct: 61  RPLSKRKHWVVAEILRKARIYEPPSQDNQTVSDKSNVSAPSTT 103

[Close]

BLAST of Carg00120 vs. TrEMBL
Match: tr|A0A2P4LS14|A0A2P4LS14_QUESU (30s ribosomal protein s17 OS=Quercus suber OX=58331 GN=CFP56_10536 PE=3 SV=1)

HSP 1 Score: 161.0 bits (406), Expect = 1.4e-36
Identity = 83/103 (80.58%), Postives = 91/103 (88.35%), Query Frame = 0


Query: 1   MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPS 60
           MKQVVGMVVSNKMQKSVVVAVDRLF+HKLYNRYVKRTSKFMAHDE++QCNIGDRV+LDPS
Sbjct: 1   MKQVVGMVVSNKMQKSVVVAVDRLFHHKLYNRYVKRTSKFMAHDEHDQCNIGDRVRLDPS 60

Query: 61  RPLSKHKRWVVAEILRKARIYQPPSQENQVVSDKGKVSAPSTT 104
           RPLSK+KRWVVAEIL+KARIYQPPS  +     K     PS+T
Sbjct: 61  RPLSKNKRWVVAEILKKARIYQPPSPPS-----KTATQTPSST 98

[Close]

BLAST of Carg00120 vs. TrEMBL
Match: tr|A0A2H5NAW6|A0A2H5NAW6_CITUN (Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_028360 PE=3 SV=1)

HSP 1 Score: 160.6 bits (405), Expect = 1.9e-36
Identity = 81/102 (79.41%), Postives = 89/102 (87.25%), Query Frame = 0


Query: 1   MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPS 60
           MK VVG+VVSNKMQKSVVVAVDRLF+HK+YNRYVKRTSKFMAHDENN+CNIGDRV+LDPS
Sbjct: 1   MKSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNECNIGDRVRLDPS 60

Query: 61  RPLSKHKRWVVAEILRKARIYQPPSQENQVVSDKGKVSAPST 103
           RPLSKHK WVVAEIL+KARIY PPS +N   +    VS P T
Sbjct: 61  RPLSKHKHWVVAEILKKARIYVPPSADNAAAA---AVSNPET 99

[Close]

BLAST of Carg00120 vs. TrEMBL
Match: tr|V4RMK3|V4RMK3_9ROSI (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10006280mg PE=3 SV=1)

HSP 1 Score: 159.8 bits (403), Expect = 3.2e-36
Identity = 77/88 (87.50%), Postives = 83/88 (94.32%), Query Frame = 0


Query: 1  MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPS 60
          MK VVG+VVSNKMQKSVVVAVDRLF+HK+YNRYVKRTSKFMAHDENNQCNIGDRV+LDPS
Sbjct: 1  MKSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVRLDPS 60

Query: 61 RPLSKHKRWVVAEILRKARIYQPPSQEN 89
          RPLSKHK W VAEIL+KARIY PPS +N
Sbjct: 61 RPLSKHKHWAVAEILKKARIYVPPSADN 88

[Close]

BLAST of Carg00120 vs. TrEMBL
Match: tr|A0A067F623|A0A067F623_CITSI (Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g034020mg PE=3 SV=1)

HSP 1 Score: 159.8 bits (403), Expect = 3.2e-36
Identity = 77/88 (87.50%), Postives = 83/88 (94.32%), Query Frame = 0


Query: 1  MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPS 60
          MK VVG+VVSNKMQKSVVVAVDRLF+HK+YNRYVKRTSKFMAHDENNQCNIGDRV+LDPS
Sbjct: 1  MKSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVRLDPS 60

Query: 61 RPLSKHKRWVVAEILRKARIYQPPSQEN 89
          RPLSKHK W VAEIL+KARIY PPS +N
Sbjct: 61 RPLSKHKHWAVAEILKKARIYVPPSADN 88

The following BLAST results are available for this feature:

BLAST of Carg00120 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022943007.1	1.7e-49	100.00	uncharacterized protein LOC111447872 [Cucurbita moschata] >XP_022943008.1 unchar...	[more]
XP_022989005.1	3.8e-49	99.03	uncharacterized protein LOC111486195 [Cucurbita maxima] >XP_022989013.1 uncharac...	[more]
XP_004137152.1	1.5e-45	93.20	PREDICTED: 30S ribosomal protein S17, chloroplastic [Cucumis sativus] >XP_011653...	[more]
XP_016903240.1	1.5e-45	93.20	PREDICTED: 30S ribosomal protein S17-like [Cucumis melo]	[more]
XP_022155383.1	3.7e-44	90.29	uncharacterized protein LOC111022528 [Momordica charantia]	[more]

BLAST of Carg00120 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G49400.1	4.2e-34	80.72	Nucleic acid-binding, OB-fold-like protein	[more]
AT3G18880.1	9.3e-34	79.52	Nucleic acid-binding, OB-fold-like protein	[more]
AT1G79850.1	7.2e-10	42.31	ribosomal protein S17	[more]
AT4G30800.1	5.3e-05	39.44	Nucleic acid-binding, OB-fold-like protein	[more]
AT3G48930.1	7.7e-04	35.62	Nucleic acid-binding, OB-fold-like protein	[more]

BLAST of Carg00120 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|B1I1J7\|RS17_DESAP	2.3e-21	65.33	30S ribosomal protein S17 OS=Desulforudis audaxviator (strain MP104C) OX=477974 ...	[more]
sp\|A7HM43\|RS17_FERNB	1.5e-20	51.06	30S ribosomal protein S17 OS=Fervidobacterium nodosum (strain ATCC 35602 / DSM 5...	[more]
sp\|Q8R7W3\|RS17_CALS4	3.6e-19	59.46	30S ribosomal protein S17 OS=Caldanaerobacter subterraneus subsp. tengcongensis ...	[more]
sp\|B9MKH2\|RS17_CALBD	1.1e-18	57.69	30S ribosomal protein S17 OS=Caldicellulosiruptor bescii (strain ATCC BAA-1888 /...	[more]
sp\|A4XLS1\|RS17_CALS8	1.1e-18	56.41	30S ribosomal protein S17 OS=Caldicellulosiruptor saccharolyticus (strain ATCC 4...	[more]

BLAST of Carg00120 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S4E5I9\|A0A1S4E5I9_CUCME	9.9e-46	93.20	30S ribosomal protein S17-like OS=Cucumis melo OX=3656 GN=LOC107992092 PE=3 SV=1	[more]
tr\|A0A2P4LS14\|A0A2P4LS14_QUESU	1.4e-36	80.58	30s ribosomal protein s17 OS=Quercus suber OX=58331 GN=CFP56_10536 PE=3 SV=1	[more]
tr\|A0A2H5NAW6\|A0A2H5NAW6_CITUN	1.9e-36	79.41	Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_028360 PE=3 SV=1	[more]
tr\|V4RMK3\|V4RMK3_9ROSI	3.2e-36	87.50	Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10006280mg PE=3 ...	[more]
tr\|A0A067F623\|A0A067F623_CITSI	3.2e-36	87.50	Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g034020mg PE=3 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Cellular Component**
Term	Definition
GO:0005622	intracellular
GO:0005840	ribosome

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome

Vocabulary: **INTERPRO**
Term	Definition
IPR012340	NA-bd_OB-fold
IPR019984	Ribosomal_S17
IPR000266	Ribosomal_S17/S11

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
cellular_component	GO:0005622	intracellular
molecular_function	GO:0003735	structural constituent of ribosome

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg00120-RA	Carg00120-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000266	Ribosomal protein S17/S11	PRINTS	PR00973	RIBOSOMALS17	coord: 52..62 score: 49.27 coord: 62..69 score: 67.5 coord: 20..43 score: 37.58
IPR000266	Ribosomal protein S17/S11	PFAM	PF00366	Ribosomal_S17	coord: 6..73 e-value: 1.7E-32 score: 111.3
IPR000266	Ribosomal protein S17/S11	PANTHER	PTHR10744	40S RIBOSOMAL PROTEIN S11 FAMILY MEMBER	coord: 2..82
IPR000266	Ribosomal protein S17/S11	PRODOM	PD001295		coord: 4..71 e-value: 1.0E-29 score: 317.0
IPR019984	30S ribosomal protein S17	TIGRFAM	TIGR03635	TIGR03635	coord: 2..71 e-value: 3.5E-31 score: 105.1
IPR019984	30S ribosomal protein S17	HAMAP	MF_01345_B	Ribosomal_S17_B	coord: 1..76 score: 22.34
None	No IPR available	GENE3D	G3DSA:2.40.50.140		coord: 1..99 e-value: 1.2E-35 score: 123.2
None	No IPR available	PANTHER	PTHR10744:SF1	37S RIBOSOMAL PROTEIN S17, MITOCHONDRIAL	coord: 2..82
IPR012340	Nucleic acid-binding, OB-fold	SUPERFAMILY	SSF50249	Nucleic acid-binding proteins	coord: 2..86

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg00120	Cla011721	Watermelon (97103) v1	carwmB0668
Carg00120	MELO3C026421	Melon (DHL92) v3.5.1	carmeB0657
Carg00120	ClCG07G006010	Watermelon (Charleston Gray)	carwcgB0651
Carg00120	CmaCh04G010080	Cucurbita maxima (Rimu)	carcmaB0948
Carg00120	CmoCh04G010870	Cucurbita moschata (Rifu)	carcmoB0923
Carg00120	Lsi04G011240	Bottle gourd (USVL1VR-Ls)	carlsiB610
Carg00120	Cp4.1LG01g07530	Cucurbita pepo (Zucchini)	carcpeB0938
Carg00120	MELO3C026421.2	Melon (DHL92) v3.6.1	carmedB0667
Carg00120	Cla97C07G134100	Watermelon (97103) v2	carwmbB0700
Carg00120	Bhi07G000306	Wax gourd	carwgoB0785

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg00120	Silver-seed gourd	carcarB214
Carg00120	Cucurbita maxima (Rimu)	carcmaB0949
Carg00120	Cucurbita moschata (Rifu)	carcmoB0924
Carg00120	Cucurbita pepo (Zucchini)	carcpeB0939
Carg00120	Wild cucumber (PI 183967)	carcpiB0704
Carg00120	Cucumber (Chinese Long) v2	carcuB0692
Carg00120	Cucumber (Chinese Long) v3	carcucB0705