ClCG07G006010 (gene) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG07G006010
Type	gene
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	30S ribosomal protein S17
Location	CG_Chr07 : 9818194 .. 9825460 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CCCTATTTAACGTTCAGCGACCTCTGCCCCCCCGTTACCAGCTACGGTACTCCGCCCCACCGCGCGCCGTTCCTATCCAGACAGTTTCTGAATCCTCGAGTTTGTAGCAGCTTGAAGCTTAAAAGGGCTGTTGGGTTTTCTTTTGGGGGTTGGGTTTTCAATTGGAGGGCCAAGATGAAGCAGGTAGTCGGGATGGTGGTGTCAAACAAAATGCAGAAATCGGTGGTCGTTGCAGTGGACAGGTTGTTTTATCACAAGCTCTATAATCGCTACGTTAAGCGCACTTCCAAGTTCATGGCTCATGACGAGAACAACCAGTGCAATATTGGTGACAGGGTGAGAATTCAATCCCATCTTTACTCCCCAATTAATTTGTTTTTCTTCCTTTCAATTCAATCAATCAAGTTGTGGACTCGATGTTTAGTTTCATTTACAATATCGTGCAAATTTGTTCGACAACACTGTAGTACTGGATGAAAATGGGTAGTGTTCAGCATGTTTTCGTGAATGTTCTTTGTGTTTGAAGAGTTTATTTGTTAAGCTTACATATGATTAATTTGAACTTATATAATTCTTGTTTCGTTTTCATTTCTCTTGAATATGAACCTACGGTTCGTTATATTTTAACGTTTCTAGTTAATCCACTGATGAAACAAATTGAATTTTATAAATTCAGGTTAAACTAGACCCTTCTAGGCCGTTGAGCAAGCGTAAACATTGGGTTGTTGCTGAGATTTTGAGGAAAGCACGAATTTACGAGCCACCATCACAAGCTAACCAGATTGTTTCAGACAAAAGCCAAGTTTCAGCTCCTTCAACCACCTAAGGTTTGATTGAGACCTTTGTTATTTGCTTTGTAGAATGCCAAACTTGTATCATATTGATTTTTGGATTGTCGTGGGCAATCATAATTACTTGAATCCCTGATGACTATTTGAGTGATTTTTTTCTTCCATTTAGAGCACATTGCAGTTGACTGTTATTTATAAGAAACATTACAAGAAAACATTCTTTATTGTTTTGTAAACAATACCTGATACTCGGCATTTTCCCATCTTTCTTGATGCCACTGTGGGTTCATGAGTAGTTCTTGCTAATGCATTGATAACATGCTGTGTATCATGCTAAGGAGATTTAGTATTAAACTAAAATGAAGCATTTTGGTAGTCTTGAAACTAATGTACTTGTGAAAGTGGTTTTTTGGGTTACATTGACACATATAATGACAACAAGCTTTTTTTATGCGTACATATGAGAAAAAAGATAGTGTAAAGGAGCTAGGAGAGGTGGATGAAGAACAAACATAAAGAACTCACTCACTGTTCTTCTAGTGAGTTTGATTGGAGGGCTGTCTTTATTATCTATGATTGTCACAATTTGAGAGCCTTTGTTAATATATCTACTCCTTTTTGTTATTGTCATTCTTTTTATAGAACGAATCACTTTGAGTGATAAATAATGAAAGAATTCGAGGGCATCTAAAAATATTATGCCCACAATAAGAATTTTACGCTAATCAGTTAGAAAGAAATGTAAGAACTATTAGAGCCTTGTATTTTCATTGCTTCATTTTTCCTTTTAGGAGTTTATTTCCTTTAACGATTTGTTGTACCTTTTAATTTTGATAATAATAGTAGTCCATGGGAGGCCCTTTTATGATGCTTGATTTTATGTTCATTCTGTCCAATTGTTTGTAAGCACTTTGCATTCTTTCACCCCCTTTTATCTAGATAATGCATTGCTTAGAATTCAGGGTTTTGATAAGCCAGATGGCCGTCCTTAAAAGATTTATTAGTGATTGTTCATGATCTTTATTTGAAGTTTCATTGGGTTAAGATTAAAAACACTTTTTCACTTATCATTTTAGAACTACTTGGAAACTTCAAAACTAGCATGGATCGGCTAGTGGTCAACAAGGGCCAAGGTAAATTGTAGAGTTAAGAAATGGGTTCAATTTAAAGTTCTGTTGGGTGAAGATTAAAAGCACTTTTTTACTTATCATTTTAGAACTACTTGGAAACTTCAAAACTAGCATGGGTCGGCTAGTGGTCAACAAGGGCCAATGTAAATTGTAGAGTTAAGAAATGGGTTCAAACCATGGTAGCTGCCTACCTAAGATTTGAAAATCATTCAAGTTTGCTTTGCAATTAAATATAGTAGAGTCAAACGGTTATTAGAGAAAACCTTCTACATCATAGGGGATTCTTTTGGAGGTTTCAATGGTGTGGTTGTATAAGCATGGCACACAAGAAGTGGAGAGCTGAATCTTGTGGAGAAAATCAAAGTTCAAAGGAAAATTTAGTGGCTTTCTTCAAGTGAAATTAGGTTTCCAAGGGTTCTGGTACGTGGCTGTTATGGAGCCATGTCAGCGGATCTTTGTTGACAGATGCACCTTATTGTTTAATGAGTTCAATATGCTATAGAAACCTTTTATTTTCATTTACAATGCAGAGAAGAAGGTTTCTCGTTGGTCATCAAAACTTTCCTGAAAAAATAAGAAAAGGAAAATGGTTGATTTATTAAGTCAAATCAGTAGACTTCTCAACTTTTGACCATGTTTCTTTGAAGGGGAGATGCAAGCACCTGTAGCACCTTATTCTTAAAAGTTGGAGGGTGCAAAGCAAACATTTTTGCAAATGAGGCTATAAAGGTACTGCTGAAGCTTTTTCCCAAATCATGAGATATCTGCTAAACATATTAATGCTGACCCATTTTTCTTCTAATTAGCCTCCCTTTTCTATATAGTGGCGTGATTAAATGGAAGAAAGGTTTTTACTAAGACTATTGCTCACCTTCTGGTAGAAAGGTTCAATTAGCTCCATCTTTCAAGTTCATTGGGTCTAGTGGAGTGGACATATATCGGATATAAGTTTTGATCTTCAACCTTTGAGAGAGATCTTTAGCCAACCTGCATATTGAAGACTCAAGTTCTGTAGAAGATAAACGTTTCCTAATAAAGCTTTTTCAAGTCAGGATGAAGTTGTAGGTTTGATTCAACTTCTTGTAAGAACATTATGATGGATTGGTTTTCAACCTGATGTGTCGGATGGAAACTTGAAGTTGAATCCATGTAGGGAAAGAGGTTTTGGTCTTTAATGAACTGTAGGAAATGGTTTCAAGAAGTAATGAGGAGATGGTTGGGCCTGATGGGTTTTGTCTGAAGTCTGGTTTTGTTGAATGCTAACACCAACATAATTTTTGCTTGGCTCCAATTATTAAATCACAAATGATAGTAAGCGCTCTATGGGTGTGAAACCTTATCACTTCCCTTAATGATGATAAAAGGTATTTTGTGCGCTTTATATGGGTAGCAATGTTGTTAAATGAAGATTTGGAGCTGAAATACAAGTACACATTTGAGGGATAGAGCTCAACGCAGTTTGGTTATTCACTCTATTTTGAAATCTAATCCTAATATTGTGATTGTCCAAGAAATACAATTCATATTAGTTGATGGAAGATTGGTTGAACCTTCATGGAGTTCCAAGAACATTGCAAATGACTTCTTTCTATGCATTGGGTCTATCAGGTCTTTTTGTTTTATTGCACAGCCCTTATTTATGTTTTGGCAGGTTTGTATGATTGTAACCGGGTCTTGGGAGTAATCTCGATGTGGTAAGATGATCAAGAGGATAGCCTCATGTGGCAATAGATTTATTTCTAGCTCGAAGAACAATTTCTCTTTTTTACCCTCTAGAAAAACAGTCTTTTACATGTTCAAACACAAGAGAAAGCTCATCTTTCTTGTTTGGTTAGATCTCTCTCCTATACATTGTTGTAAAATTTTCTAAAATTTATAAGAGTCGGGTCAAATGAGTAGGAAAACATCTATTATCCAATTGTCCTTGAAGTTGGCAATTTGAAAGCTCATTTTCGTCTGTACTGCAAGGCACGCTCGGATGTGCTCCTAGACATGCTAGGCGCATGTTTAGCACCTTGCTTTGAATAGGCGAGGCGCAATTAATAAGATGCGTGCCTTTGCAGTGCCTATTGTGAGGCACACAGGTGCATTAGGCGCGAGCCTTCAACCAAAATGCAAGGAATTCTGCATTTGGGTTTTTTCCCCTTGATCTGCTGTATTTTAATCCTAAACACATTTATTAAACCTAAACATTACATTACAGCTTTTAATTTACTTCAAAAAAATAGAAACATGAATGAAGCAGGAAGCACCACGCCTCTTCGTCTTCTTCTTGTATGGCATAAATGAGGCTTTTCATCTCTGTTTCTTATTCAAAAAACAGAGACTTCCTCTTTGTCTTCTTCTTTGCTATTTCTTACTAAAAAACAGAAGACTTTTTGGGGCTTTTTAAACAACAGTTCAAGAAATTCTTTAGTCTCTGTGTTTCATTTAAAACACAGGACTCCACACAGCATTTTTGTCTTCTTCACTGGACTGGCCGTTGTTCAGTAATCAGTTTTCTCCTTGAAGTTTCTCCTTCTTAAACTTCACGGCACCAACACCCACCCTGTCTGTATTTTTCCCCTAGCTCCTGTAAGCTATTTTCCCATTGTCTTCTCTGTTTCTTTTTCAAAAAATAGAGACTGCCTTTTGTCTTCTTCTTTGCTAATTCTTAATAAATAAACAGAGGACTTTTTGGGGCATTTTAAACCACGACTCAAGAAATTTAGGTTTACTAGAGCAAGGGTGTGCTAGTGGACCCCTCCCCCCTCTCTTTCCTGCCTCTTTCCTTTCACCAACATCTCCTCCTCCTCGTCAACTCAGTAAAGCTGCTTTGCTCCTCTCCCTATCGGTTGAACTGCTTTACTCCTCTTGTCTCCTTTCTTTTATGCCTTCAATCAAGTTTGTCAGTTCATGCACACTTTCACCACCCATTGTACATCTTCAAGCTGTAAAATGCATCTTATGGTATCTAAAGGGTTCTCTTGGCCTCGGCCTAACCATCACTCTGGGACCATTAACCACCTTCTTTGCATTCTACGATGCCGACTAGGCTGGCTGTCCTGATAGCAGACAGTCCACTATTGTCTTGATTTTGTGTTGAAAGACTAACATTATAACATTGGTTATCTTTTATATATTGTAGTTAAGCCTCATTTCTTCCAATGAATGTTTTGTAGTGTGTATATACGCACGTATATATTTTTATGTTTTTTTATACATAGTGCGGTTTTAAAATAAATCCGCACCTTTTTGTGCACCTTGCGCCTAGGCTTCAGACAGTCATTGCGCATTATTGTGCCTTGAGCTTCAAAAACACTGATTATATTTGAACCTTATATTTGGTAGGTTCATGCTAAGTTCCTTCGTTTATGCAACAGATGTGGAACTTTTCACTAGATAGTAGATATAGGTTATTTGGGCCATTCTATCATAAAGCTGAAAGAATTTAAAGGCAAACTTAGAATGTGGAAAAAAGATTTTTGGAAATGTTGATTGTATTGCCAGCCTGGATGTGCTTTTGATAATGAAAGAGACTTGTCTCAAAATGAAAGTAGCTATACAACATCAATGAAAATAAATTGCTAGGGATTATCCTCAAAGAGGATATGTTATGAAGATCAAAGTGCCAACCGAAGTGGCGAAAGAAGGGTGAGGAAAACTTCTACTTCTTTCACACAATAACTTGGCTACTAATACAAAGAGTTTCCTTTAAGAAATTCATTTGGAGGACGACAGATGTTTGGTCATTGTTTAGCAAGTGGAAAGGAAATCAATTTTTCTGTCTACAAAATGGATTCTCATCTTTATTCCCAAAGGGCAGTCCAGTTTTTTTTCAATTCCTTATTCAAACGAGCTCCATCGTATTGCTGTGATTGAGTTTGGCTTAGACAAGGAAGAGAATGTCATTGGGCTTCATCCCATCAACGAATTTATAAGAGATAGCACTTCCTGACTCTGGTTTTTTTTTGGTTTTGTTCCACAACTTTATGCATAAAGGTATTATAAACTCTAACATCAATGTGATTTCTTTTTCCTTTGGTTCCTAAAAATTTAATGCCAAATGTTTGAATTCAAGCTTCCGCTTCCCTATTGCAGAAATTTTGGCTAGTGGACTTCTTTCGGTATTTTCCGGTACTTTTGGTATTGGTCTGAGCTTAAACGGCTTTGATCCTAAAAATTCCAGTGAACATACCTTGGCTTCAAGTGTTGCTTCTTTAAGAAAAATGTGGAACGGAAGATTACTATATGTTCTTACGGTGCCCTTTTGTCTCTATCTGGAGAAGGTTTTGTGGTACTTTCAGTTCAACTAATTGGATTGCAGTTCCTACAAGATCTTAGATGACTCCTAATGCAAATATATATGTAGGAATAGCTACCTTGAGCATAGTTCGATGGGCTAGGGCATTATAATCTATGACTTTTAAGTCATAGGTTCGAGTTTCATCCTACATATTGTTCAACAAGTTATTTTGTTTTGTTGTGTATTTTTTTTTTTTCTCTCGGCAGTAACATGTCTGAACTGAAAACATTAGCTGCTTTGTTTCTTTTAGTACAAGTGGAGTGAGGTAGGAGGATTTGGACTTTTGACCTCGAGAGGAGTACATGCTAATACCATTGAATTATGTGATTTGTTTACGTGGTTTTCATGCTAGCTACCCTTTTGGGAGTTAAGTGGAATGAAATGATAGAATCTTTAAAGACAGAGTGATGTGGAATGAATAGGGAATCCTTAAGTTGAGTGATCGATGGATGATTCTGTAATTCATTATTGTTTCTCCTTTTTGTGGCCTTATCATTTGTTTTGATAATTATTCAGTTTTTTATGGTTCAACCTGATCATGCATGTATATAATTTCTTTTCAACTCAGTTAAGTTGGCTCCCTCTCCCTTTCTATTGATTTCTTTCATCAATGTAAAAAACTGCAAATCTGTCCCACATTTATGTAAAGACACTTACAATAATATTTGTTTGCTTTGCACAACCAATTTAATAGGGGAAACTACTGCAGACCACATCGAGACCGAGTCAGATCGAAAAGTTCGCAATGCACTGGAAAACCAAAGAACAAAAACTCTGGAAAATGAAGTTTTGTAAGCAGTATGTTTCTCATGTCAAAGATTTGTAGTTACATTATTATTACCGTCTTGTACTGTTTTGTAAACCTTCTTTTCCTATGAGCATTTATCCCCACGATTTGTTGTGAGGTTGTTAAAAATGCATATTCAGAAAGGTTCCGTCCATTGGTAGGCATGTCTCCAGGCGGAACAAAGAAGAAGAGATATTAGGATCTATTTGGTAGAGAATTTTAAAACAAAGAATTTAATAAACATAATTGTATTTCATGTTTTCAAATATGTAGC

mRNA sequence

CCCTATTTAACGTTCAGCGACCTCTGCCCCCCCGTTACCAGCTACGGTACTCCGCCCCACCGCGCGCCGTTCCTATCCAGACAGTTTCTGAATCCTCGAGTTTGTAGCAGCTTGAAGCTTAAAAGGGCTGTTGGGTTTTCTTTTGGGGGTTGGGTTTTCAATTGGAGGGCCAAGATGAAGCAGGTAGTCGGGATGGTGGTGTCAAACAAAATGCAGAAATCGGTGGTCGTTGCAGTGGACAGGTTGTTTTATCACAAGCTCTATAATCGCTACGTTAAGCGCACTTCCAAGTTCATGGCTCATGACGAGAACAACCAGTGCAATATTGGTGACAGGGTTAAACTAGACCCTTCTAGGCCGTTGAGCAAGCGTAAACATTGGGTTGTTGCTGAGATTTTGAGGAAAGCACGAATTTACGAGCCACCATCACAAGCTAACCAGATTGTTTCAGACAAAAGCCAAGTTTCAGCTCCTTCAACCACCTAAGGGGAAACTACTGCAGACCACATCGAGACCGAGTCAGATCGAAAAGTTCGCAATGCACTGGAAAACCAAAGAACAAAAACTCTGGAAAATGAAGTTTTGTAAGCAGTATGTTTCTCATGTCAAAGATTTGTAGTTACATTATTATTACCGTCTTGTACTGTTTTGTAAACCTTCTTTTCCTATGAGCATTTATCCCCACGATTTGTTGTGAGGTTGTTAAAAATGCATATTCAGAAAGGTTCCGTCCATTGGTAGGCATGTCTCCAGGCGGAACAAAGAAGAAGAGATATTAGGATCTATTTGGTAGAGAATTTTAAAACAAAGAATTTAATAAACATAATTGTATTTCATGTTTTCAAATATGTAGC

Coding sequence (CDS)

ATGAAGCAGGTAGTCGGGATGGTGGTGTCAAACAAAATGCAGAAATCGGTGGTCGTTGCAGTGGACAGGTTGTTTTATCACAAGCTCTATAATCGCTACGTTAAGCGCACTTCCAAGTTCATGGCTCATGACGAGAACAACCAGTGCAATATTGGTGACAGGGTTAAACTAGACCCTTCTAGGCCGTTGAGCAAGCGTAAACATTGGGTTGTTGCTGAGATTTTGAGGAAAGCACGAATTTACGAGCCACCATCACAAGCTAACCAGATTGTTTCAGACAAAAGCCAAGTTTCAGCTCCTTCAACCACCTAA

Protein sequence

MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKRKHWVVAEILRKARIYEPPSQANQIVSDKSQVSAPSTT

Homology

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BLAST of ClCG07G006010 vs. Swiss-Prot
Match: RS17_FERNB (30S ribosomal protein S17 OS=Fervidobacterium nodosum (strain ATCC 35602 / DSM 5306 / Rt17-B1) GN=rpsQ PE=3 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 8.5e-21
Identity = 46/83 (55.42%), Postives = 60/83 (72.29%), Query Frame = 1


Query: 2  KQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSR 61
          K++VG+VVS+KM K+V V V+RL  H  + +YVKRT KF AHDENN C +GD V+++ SR
Sbjct: 4  KRLVGVVVSDKMDKTVTVKVERLVKHAKFGKYVKRTKKFYAHDENNACRVGDVVEIEESR 63

Query: 62 PLSKRKHWVVAEILRKARIYEPP 85
          PLSK K WVV  IL ++++ E P
Sbjct: 64 PLSKLKRWVVVNILERSKLSETP 86

[Close]

BLAST of ClCG07G006010 vs. Swiss-Prot
Match: RS17_DESAP (30S ribosomal protein S17 OS=Desulforudis audaxviator (strain MP104C) GN=rpsQ PE=3 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 2.5e-20
Identity = 47/75 (62.67%), Postives = 57/75 (76.00%), Query Frame = 1


Query: 6  GMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSK 65
          G VVS+KM K+VVVAVD L  H LY R V+RT KFMAHDE+NQC IGD+VK+  +RPLS+
Sbjct: 11 GRVVSDKMDKTVVVAVDTLVKHPLYGRTVRRTRKFMAHDEDNQCRIGDKVKIAETRPLSR 70

Query: 66 RKHWVVAEILRKARI 81
           K W VAE+L +++I
Sbjct: 71 HKRWRVAEVLERSQI 85

[Close]

BLAST of ClCG07G006010 vs. Swiss-Prot
Match: RS17_PHOPR (30S ribosomal protein S17 OS=Photobacterium profundum (strain SS9) GN=rpsQ PE=3 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 2.7e-19
Identity = 40/76 (52.63%), Postives = 57/76 (75.00%), Query Frame = 1


Query: 5  VGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLS 64
          +G V+S+KM KS+VVA++R+  H +Y +Y+KRT+K  AHDENN+CN+GD V++   RPLS
Sbjct: 9  LGRVISSKMDKSIVVAIERMVKHPMYGKYIKRTTKLHAHDENNECNLGDTVEVRECRPLS 68

Query: 65 KRKHWVVAEILRKARI 81
          K K W +  I+ KAR+
Sbjct: 69 KTKSWTLVRIVEKARV 84

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BLAST of ClCG07G006010 vs. Swiss-Prot
Match: RS17_THEMA (30S ribosomal protein S17 OS=Thermotoga maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM 10099) GN=rpsQ PE=3 SV=2)

HSP 1 Score: 95.9 bits (237), Expect = 2.7e-19
Identity = 46/96 (47.92%), Postives = 66/96 (68.75%), Query Frame = 1


Query: 2  KQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSR 61
          K++ G+VVS+KM K+VVVAV++L  H LY +YVKRT K+ AHDE N+C IGD V+++ +R
Sbjct: 4  KRLTGIVVSDKMDKTVVVAVEKLVQHPLYKKYVKRTKKYHAHDERNECKIGDVVEIEETR 63

Query: 62 PLSKRKHWVVAEILRKARIYEPPSQANQIVSDKSQV 98
          PLSK K W V  I+++   +EP     ++V +K  +
Sbjct: 64 PLSKTKRWRVVRIIQR---FEP----ERVVKEKEDI 92

[Close]

BLAST of ClCG07G006010 vs. Swiss-Prot
Match: RS17_DESOH (30S ribosomal protein S17 OS=Desulfococcus oleovorans (strain DSM 6200 / Hxd3) GN=rpsQ PE=3 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 3.6e-19
Identity = 43/77 (55.84%), Postives = 56/77 (72.73%), Query Frame = 1


Query: 2  KQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSR 61
          +Q  G VVS+KM K+V+VAV+RL  H+ Y +YV+RT+KF AHDE NQC +GD+V +  SR
Sbjct: 8  RQFEGTVVSDKMDKTVIVAVERLVKHQEYKKYVRRTAKFAAHDEQNQCAVGDKVIITESR 67

Query: 62 PLSKRKHWVVAEILRKA 79
          PLS+ KHW V  ++ KA
Sbjct: 68 PLSRTKHWRVVNVVEKA 84

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BLAST of ClCG07G006010 vs. TrEMBL
Match: A0A061E6G1_THECC (Nucleic acid-binding, OB-fold-like protein isoform 1 OS=Theobroma cacao GN=TCM_009914 PE=3 SV=1)

HSP 1 Score: 166.4 bits (420), Expect = 1.8e-38
Identity = 81/103 (78.64%), Postives = 90/103 (87.38%), Query Frame = 1


Query: 1   MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPS 60
           MK VVG+VVSNKMQKSVVVAVDRLF+HKLYNRYVKRTSKFMAHDEN+QCNIGDRVKLDPS
Sbjct: 1   MKSVVGVVVSNKMQKSVVVAVDRLFHHKLYNRYVKRTSKFMAHDENDQCNIGDRVKLDPS 60

Query: 61  RPLSKRKHWVVAEILRKARIYEPPSQANQIVSDKSQVSAPSTT 104
           RPLSKRKHWVVAE+L+KARIY PPS      ++    + PS+T
Sbjct: 61  RPLSKRKHWVVAEVLKKARIYVPPSMDKAANANFKNEAPPSST 103

[Close]

BLAST of ClCG07G006010 vs. TrEMBL
Match: A0A067LQC8_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06532 PE=3 SV=1)

HSP 1 Score: 164.1 bits (414), Expect = 9.1e-38
Identity = 82/103 (79.61%), Postives = 89/103 (86.41%), Query Frame = 1


Query: 1   MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPS 60
           MK VVGMVVSNKMQKSVVVAVDRLF++KLYNRYVKRTSKFMAHDE NQCNIGDRV+LDPS
Sbjct: 1   MKSVVGMVVSNKMQKSVVVAVDRLFHNKLYNRYVKRTSKFMAHDEQNQCNIGDRVRLDPS 60

Query: 61  RPLSKRKHWVVAEILRKARIYEPPSQANQIVSDKSQVSAPSTT 104
           RPLSKRKHWVVAEIL+KARIY PPS  N   S+ +     S+T
Sbjct: 61  RPLSKRKHWVVAEILKKARIYVPPSADNAASSNSTIEVTDSST 103

[Close]

BLAST of ClCG07G006010 vs. TrEMBL
Match: A0A0J8BC15_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_3g068020 PE=3 SV=1)

HSP 1 Score: 163.3 bits (412), Expect = 1.6e-37
Identity = 81/102 (79.41%), Postives = 89/102 (87.25%), Query Frame = 1


Query: 1   MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPS 60
           MK VVG+VVSNKMQKSVVVAVDRLF+HK++NRYVKRTSKFMAHDE NQCNIGDRVKLDPS
Sbjct: 1   MKPVVGVVVSNKMQKSVVVAVDRLFHHKIFNRYVKRTSKFMAHDEQNQCNIGDRVKLDPS 60

Query: 61  RPLSKRKHWVVAEILRKARIYEPPSQANQIVSDKSQVSAPST 103
           RPLSKRK+W+VAEIL+KARIY PPS A+ I    S    PST
Sbjct: 61  RPLSKRKNWIVAEILKKARIYTPPS-ADSIAQSSSITKPPST 101

[Close]

BLAST of ClCG07G006010 vs. TrEMBL
Match: A0A151T9A6_CAJCA (30S ribosomal protein S17 OS=Cajanus cajan GN=KK1_018202 PE=3 SV=1)

HSP 1 Score: 162.9 bits (411), Expect = 2.0e-37
Identity = 85/105 (80.95%), Postives = 91/105 (86.67%), Query Frame = 1


Query: 1   MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPS 60
           MKQVVGMVVSNKMQKSVVVAVDRLFYHK+Y+RYVKRTSKFMAHDENN CNIGDRV+LDPS
Sbjct: 1   MKQVVGMVVSNKMQKSVVVAVDRLFYHKVYDRYVKRTSKFMAHDENNLCNIGDRVRLDPS 60

Query: 61  RPLSKRKHWVVAEILRKARIYEPPSQANQIVSD--KSQVSAPSTT 104
           RPLSK KHWVVAEIL+KARIY PPS     VSD  KS+  A  T+
Sbjct: 61  RPLSKNKHWVVAEILKKARIYVPPSTP---VSDNMKSRSEAAPTS 102

[Close]

BLAST of ClCG07G006010 vs. TrEMBL
Match: M5W0Y5_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013875mg PE=3 SV=1)

HSP 1 Score: 162.9 bits (411), Expect = 2.0e-37
Identity = 83/103 (80.58%), Postives = 88/103 (85.44%), Query Frame = 1


Query: 1   MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPS 60
           MK VVGMVVSNKMQKSVVVAVDRLF+HKLYNRYVKRTSKFMAHDE N CNIGDRV+LDPS
Sbjct: 1   MKAVVGMVVSNKMQKSVVVAVDRLFHHKLYNRYVKRTSKFMAHDEQNLCNIGDRVRLDPS 60

Query: 61  RPLSKRKHWVVAEILRKARIYEPPSQANQIVSDKSQVSAPSTT 104
           RPLSKRKHWVVAEIL KARIY+PP     + SD   VS  ST+
Sbjct: 61  RPLSKRKHWVVAEILTKARIYQPP-----LPSDSPSVSPHSTS 98

[Close]

BLAST of ClCG07G006010 vs. TAIR10
Match: AT1G49400.1 (AT1G49400.1 Nucleic acid-binding, OB-fold-like protein)

HSP 1 Score: 152.5 bits (384), Expect = 1.4e-37
Identity = 73/102 (71.57%), Postives = 84/102 (82.35%), Query Frame = 1


Query: 1   MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPS 60
           MK V+G VVSNKMQKSVVVAVDRLF++K+YNRYVKRTSKFMAHD+ + CNIGDRVKLDPS
Sbjct: 1   MKPVIGTVVSNKMQKSVVVAVDRLFHNKIYNRYVKRTSKFMAHDDKDACNIGDRVKLDPS 60

Query: 61  RPLSKRKHWVVAEILRKARIYEPPSQANQIVSDKSQVSAPST 103
           RPLSK KHW+VAEI++KARIY P + A  + +  S  SA +T
Sbjct: 61  RPLSKNKHWIVAEIIKKARIYSPKAAAAAVSASASASSASTT 102

[Close]

BLAST of ClCG07G006010 vs. TAIR10
Match: AT3G18880.1 (AT3G18880.1 Nucleic acid-binding, OB-fold-like protein)

HSP 1 Score: 146.4 bits (368), Expect = 1.0e-35
Identity = 70/100 (70.00%), Postives = 79/100 (79.00%), Query Frame = 1


Query: 1   MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPS 60
           MK V+G VVSNKMQ SVVVAVDRLF++ +YNRYVKRTSKFMAHDE + CNIGDRVKLDPS
Sbjct: 1   MKAVIGTVVSNKMQMSVVVAVDRLFHNNIYNRYVKRTSKFMAHDEKDSCNIGDRVKLDPS 60

Query: 61  RPLSKRKHWVVAEILRKARIYEPPSQANQIVSDKSQVSAP 101
           RPLSK KHW+V+EI++KARIY P + A  + S  S    P
Sbjct: 61  RPLSKHKHWIVSEIIKKARIYSPQAAAAALNSSTSIAEQP 100

[Close]

BLAST of ClCG07G006010 vs. TAIR10
Match: AT1G79850.1 (AT1G79850.1 ribosomal protein S17)

HSP 1 Score: 63.9 bits (154), Expect = 6.5e-11
Identity = 33/78 (42.31%), Postives = 44/78 (56.41%), Query Frame = 1


Query: 1   MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPS 60
           MK + G VV     K+V V V RL  H  Y R V+   K+ AHD +NQ  +GD V+L+ S
Sbjct: 50  MKTMQGRVVCATSDKTVAVEVVRLAPHPKYKRRVRMKKKYQAHDPDNQFKVGDVVRLEKS 109

Query: 61  RPLSKRKHWVVAEILRKA 79
           RP+SK K +V   ++ +A
Sbjct: 110 RPISKTKSFVALPVIARA 127

[Close]

BLAST of ClCG07G006010 vs. NCBI nr
Match: gi|449438753|ref|XP_004137152.1| (PREDICTED: 30S ribosomal protein S17, chloroplastic [Cucumis sativus])

HSP 1 Score: 197.2 bits (500), Expect = 1.4e-47
Identity = 98/103 (95.15%), Postives = 98/103 (95.15%), Query Frame = 1


Query: 1   MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPS 60
           MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPS
Sbjct: 1   MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPS 60

Query: 61  RPLSKRKHWVVAEILRKARIYEPPSQANQIVSDKSQVSAPSTT 104
           RPLSK KHWVVAEILRKARIYEPPSQ  Q VSDKS VSAPSTT
Sbjct: 61  RPLSKHKHWVVAEILRKARIYEPPSQDKQSVSDKSNVSAPSTT 103

[Close]

BLAST of ClCG07G006010 vs. NCBI nr
Match: gi|1009129349|ref|XP_015881718.1| (PREDICTED: 30S ribosomal protein S17-like isoform X2 [Ziziphus jujuba])

HSP 1 Score: 167.9 bits (424), Expect = 9.1e-39
Identity = 82/103 (79.61%), Postives = 92/103 (89.32%), Query Frame = 1


Query: 1   MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPS 60
           MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRY+KRTSKFMAHDE++QCNIGDRV+LDPS
Sbjct: 1   MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYIKRTSKFMAHDEHSQCNIGDRVRLDPS 60

Query: 61  RPLSKRKHWVVAEILRKARIYEPPSQANQIVSDKSQVSAPSTT 104
           RPLSKRKHW+VAEIL+KARIY PPS +    +   Q SA S++
Sbjct: 61  RPLSKRKHWIVAEILKKARIYVPPSPSAAESTGTPQESASSSS 103

[Close]

BLAST of ClCG07G006010 vs. NCBI nr
Match: gi|743815428|ref|XP_011019937.1| (PREDICTED: 30S ribosomal protein S17, chloroplastic-like [Populus euphratica])

HSP 1 Score: 167.5 bits (423), Expect = 1.2e-38
Identity = 82/103 (79.61%), Postives = 90/103 (87.38%), Query Frame = 1


Query: 1   MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPS 60
           MK VVGMVVSNKMQKSVVVAVDRLF+HKLYNRYVKRTSKFMAHDENN CNIGDRV+LDPS
Sbjct: 1   MKSVVGMVVSNKMQKSVVVAVDRLFHHKLYNRYVKRTSKFMAHDENNLCNIGDRVRLDPS 60

Query: 61  RPLSKRKHWVVAEILRKARIYEPPSQANQIVSDKSQVSAPSTT 104
           RPLSKRK+WVVAEIL+KARIY PPS A+   S      AP+++
Sbjct: 61  RPLSKRKNWVVAEILKKARIYVPPSAADNAASKTKGAEAPTSS 103

[Close]

BLAST of ClCG07G006010 vs. NCBI nr
Match: gi|590693501|ref|XP_007044351.1| (Nucleic acid-binding, OB-fold-like protein isoform 1 [Theobroma cacao])

HSP 1 Score: 166.4 bits (420), Expect = 2.6e-38
Identity = 81/103 (78.64%), Postives = 90/103 (87.38%), Query Frame = 1


Query: 1   MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPS 60
           MK VVG+VVSNKMQKSVVVAVDRLF+HKLYNRYVKRTSKFMAHDEN+QCNIGDRVKLDPS
Sbjct: 1   MKSVVGVVVSNKMQKSVVVAVDRLFHHKLYNRYVKRTSKFMAHDENDQCNIGDRVKLDPS 60

Query: 61  RPLSKRKHWVVAEILRKARIYEPPSQANQIVSDKSQVSAPSTT 104
           RPLSKRKHWVVAE+L+KARIY PPS      ++    + PS+T
Sbjct: 61  RPLSKRKHWVVAEVLKKARIYVPPSMDKAANANFKNEAPPSST 103

[Close]

BLAST of ClCG07G006010 vs. NCBI nr
Match: gi|1009129347|ref|XP_015881717.1| (PREDICTED: 30S ribosomal protein S17-like isoform X1 [Ziziphus jujuba])

HSP 1 Score: 165.6 bits (418), Expect = 4.5e-38
Identity = 78/85 (91.76%), Postives = 84/85 (98.82%), Query Frame = 1


Query: 1  MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPS 60
          MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRY+KRTSKFMAHDE++QCNIGDRV+LDPS
Sbjct: 1  MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYIKRTSKFMAHDEHSQCNIGDRVRLDPS 60

Query: 61 RPLSKRKHWVVAEILRKARIYEPPS 86
          RPLSKRKHW+VAEIL+KARIY PPS
Sbjct: 61 RPLSKRKHWIVAEILKKARIYVPPS 85

The following BLAST results are available for this feature:

BLAST of ClCG07G006010 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RS17_FERNB	8.5e-21	55.42	30S ribosomal protein S17 OS=Fervidobacterium nodosum (strain ATCC 35602 / DSM 5...	[more]
RS17_DESAP	2.5e-20	62.67	30S ribosomal protein S17 OS=Desulforudis audaxviator (strain MP104C) GN=rpsQ PE...	[more]
RS17_PHOPR	2.7e-19	52.63	30S ribosomal protein S17 OS=Photobacterium profundum (strain SS9) GN=rpsQ PE=3 ...	[more]
RS17_THEMA	2.7e-19	47.92	30S ribosomal protein S17 OS=Thermotoga maritima (strain ATCC 43589 / MSB8 / DSM...	[more]
RS17_DESOH	3.6e-19	55.84	30S ribosomal protein S17 OS=Desulfococcus oleovorans (strain DSM 6200 / Hxd3) G...	[more]

BLAST of ClCG07G006010 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A061E6G1_THECC	1.8e-38	78.64	Nucleic acid-binding, OB-fold-like protein isoform 1 OS=Theobroma cacao GN=TCM_0...	[more]
A0A067LQC8_JATCU	9.1e-38	79.61	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06532 PE=3 SV=1	[more]
A0A0J8BC15_BETVU	1.6e-37	79.41	Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_3g068020 PE=3 S...	[more]
A0A151T9A6_CAJCA	2.0e-37	80.95	30S ribosomal protein S17 OS=Cajanus cajan GN=KK1_018202 PE=3 SV=1	[more]
M5W0Y5_PRUPE	2.0e-37	80.58	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013875mg PE=3 SV=1	[more]

BLAST of ClCG07G006010 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G49400.1	1.4e-37	71.57	Nucleic acid-binding, OB-fold-like protein	[more]
AT3G18880.1	1.0e-35	70.00	Nucleic acid-binding, OB-fold-like protein	[more]
AT1G79850.1	6.5e-11	42.31	ribosomal protein S17	[more]

BLAST of ClCG07G006010 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449438753\|ref\|XP_004137152.1\|	1.4e-47	95.15	PREDICTED: 30S ribosomal protein S17, chloroplastic [Cucumis sativus]	[more]
gi\|1009129349\|ref\|XP_015881718.1\|	9.1e-39	79.61	PREDICTED: 30S ribosomal protein S17-like isoform X2 [Ziziphus jujuba]	[more]
gi\|743815428\|ref\|XP_011019937.1\|	1.2e-38	79.61	PREDICTED: 30S ribosomal protein S17, chloroplastic-like [Populus euphratica]	[more]
gi\|590693501\|ref\|XP_007044351.1\|	2.6e-38	78.64	Nucleic acid-binding, OB-fold-like protein isoform 1 [Theobroma cacao]	[more]
gi\|1009129347\|ref\|XP_015881717.1\|	4.5e-38	91.76	PREDICTED: 30S ribosomal protein S17-like isoform X1 [Ziziphus jujuba]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR000266	Ribosomal_S17/S11
IPR012340	NA-bd_OB-fold
IPR019984	Ribosomal_S17

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome

Vocabulary: **Cellular Component**
Term	Definition
GO:0005622	intracellular
GO:0005840	ribosome

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006412	translation
biological_process	GO:0051252	regulation of RNA metabolic process
biological_process	GO:0090502	RNA phosphodiester bond hydrolysis, endonucleolytic
cellular_component	GO:0005840	ribosome
cellular_component	GO:0005622	intracellular
cellular_component	GO:0022627	cytosolic small ribosomal subunit
molecular_function	GO:0003735	structural constituent of ribosome
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004523	RNA-DNA hybrid ribonuclease activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG07G006010.1	ClCG07G006010.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000266	Ribosomal protein S17/S11	PRODOM	PD001295		coord: 4..71 score: 2.0
IPR000266	Ribosomal protein S17/S11	PRINTS	PR00973	RIBOSOMALS17	coord: 52..62 score: 3.6E-11coord: 62..69 score: 3.6E-11coord: 20..43 score: 3.6
IPR000266	Ribosomal protein S17/S11	HAMAP	MF_01345_B	Ribosomal_S17_B	coord: 1..77 score: 22
IPR000266	Ribosomal protein S17/S11	PANTHER	PTHR10744	40S RIBOSOMAL PROTEIN S11 FAMILY MEMBER	coord: 1..84 score: 4.1
IPR000266	Ribosomal protein S17/S11	PFAM	PF00366	Ribosomal_S17	coord: 6..73 score: 3.5
IPR012340	Nucleic acid-binding, OB-fold	GENE3D	G3DSA:2.40.50.140		coord: 2..89 score: 7.1
IPR012340	Nucleic acid-binding, OB-fold	unknown	SSF50249	Nucleic acid-binding proteins	coord: 2..84 score: 3.98
IPR019984	Ribosomal protein S17, bacterial-type	TIGRFAMs	TIGR03635	TIGR03635	coord: 2..71 score: 3.9

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
ClCG07G006010	MELO3C026421	Melon (DHL92) v3.5.1	mewcgB071
ClCG07G006010	Cla011721	Watermelon (97103) v1	wcgwmB368
ClCG07G006010	Cla97C07G134100	Watermelon (97103) v2	wcgwmbB307
ClCG07G006010	Bhi07G000306	Wax gourd	wcgwgoB596
ClCG07G006010	CmaCh04G010080	Cucurbita maxima (Rimu)	cmawcgB673
ClCG07G006010	CmoCh04G010870	Cucurbita moschata (Rifu)	cmowcgB675
ClCG07G006010	Lsi04G011240	Bottle gourd (USVL1VR-Ls)	lsiwcgB296
ClCG07G006010	Cp4.1LG01g07530	Cucurbita pepo (Zucchini)	cpewcgB409
ClCG07G006010	MELO3C026421.2	Melon (DHL92) v3.6.1	medwcgB068
ClCG07G006010	Carg00120	Silver-seed gourd	carwcgB0651

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
ClCG07G006010	Cucumber (Chinese Long) v3	cucwcgB429
ClCG07G006010	Cucumber (Gy14) v1	cgywcgB272
ClCG07G006010	Cucurbita maxima (Rimu)	cmawcgB674
ClCG07G006010	Cucurbita moschata (Rifu)	cmowcgB676
ClCG07G006010	Wild cucumber (PI 183967)	cpiwcgB427
ClCG07G006010	Cucumber (Chinese Long) v2	cuwcgB409
ClCG07G006010	Melon (DHL92) v3.5.1	mewcgB033
ClCG07G006010	Cucurbita pepo (Zucchini)	cpewcgB410
ClCG07G006010	Cucumber (Gy14) v2	cgybwcgB375
ClCG07G006010	Silver-seed gourd	carwcgB0171