Cla97C07G134100 (gene) Watermelon (97103) v2

Overview
NameCla97C07G134100
Typegene
OrganismCitrullus lanatus (Watermelon (97103) v2)
Description30S ribosomal protein S17, chloroplastic-like
LocationCla97Chr07 : 9214738 .. 9215389 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGCAGGTAGTCGGGATGGTGGTGTCAAACAAAATGCAGAAATCGGTGGTCGTTGCAGTGGACAGGTTGTTTTATCACAAGCTCTATAATCGCTACGTTAAGCGCACTTCCAAGTTCATGGCTCATGACGAGAACAACCAGTGCAATATTGGTGACAGGGTGAGAATTCAATCCCATCTTTACTCCCCAATTAATTTGTTTTTCTTCCTTTCAATTCAATCAATCAAGTTGTGGACTCGATGTTTAGTTTCATTTACAATATCGTGCAAATTTGTTCGACAACACTGTAGTACTGGATGAAAATGGGTAGTGTTCAGCATGTTTTCGTGAATGTTCTTTGTGTTTGAAGAGTTTATTTGTTAAGCTTACATATGATTAATTTGAACTTATATAATTCTTGTTTCGTTTTCATTTCTCTTGAATATGAACCTACGGTTCGTTATATTTTAACGTTTCTAGTTAATCCACTGATGAAACAAATTGAATTTTATAAATTCAGGTTAAACTAGACCCTTCTAGGCCGTTGAGCAAGCGTAAACATTGGGTTGTTGCTGAGATTTTGAGGAAAGCACGAATTTACGAGCCACCATCACAAGCTAACCAGATTGTTTCAGACAAAAGCCAAGTTTCAGCTCCTTCAACCACCTAA

mRNA sequence

ATGAAGCAGGTAGTCGGGATGGTGGTGTCAAACAAAATGCAGAAATCGGTGGTCGTTGCAGTGGACAGGTTGTTTTATCACAAGCTCTATAATCGCTACGTTAAGCGCACTTCCAAGTTCATGGCTCATGACGAGAACAACCAGTGCAATATTGGTGACAGGGTTAAACTAGACCCTTCTAGGCCGTTGAGCAAGCGTAAACATTGGGTTGTTGCTGAGATTTTGAGGAAAGCACGAATTTACGAGCCACCATCACAAGCTAACCAGATTGTTTCAGACAAAAGCCAAGTTTCAGCTCCTTCAACCACCTAA

Coding sequence (CDS)

ATGAAGCAGGTAGTCGGGATGGTGGTGTCAAACAAAATGCAGAAATCGGTGGTCGTTGCAGTGGACAGGTTGTTTTATCACAAGCTCTATAATCGCTACGTTAAGCGCACTTCCAAGTTCATGGCTCATGACGAGAACAACCAGTGCAATATTGGTGACAGGGTTAAACTAGACCCTTCTAGGCCGTTGAGCAAGCGTAAACATTGGGTTGTTGCTGAGATTTTGAGGAAAGCACGAATTTACGAGCCACCATCACAAGCTAACCAGATTGTTTCAGACAAAAGCCAAGTTTCAGCTCCTTCAACCACCTAA

Protein sequence

MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKRKHWVVAEILRKARIYEPPSQANQIVSDKSQVSAPSTT
Homology
[Close]
BLAST of Cla97C07G134100 vs. NCBI nr
Match: XP_016903240.1 (PREDICTED: 30S ribosomal protein S17-like [Cucumis melo])

HSP 1 Score: 196.8 bits (499), Expect = 3.5e-47
Identity = 100/103 (97.09%), Postives = 100/103 (97.09%), Query Frame = 0 

Query: 1   MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPS 60
           MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPS
Sbjct: 1   MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPS 60

Query: 61  RPLSKRKHWVVAEILRKARIYEPPSQANQIVSDKSQVSAPSTT 104
           RPLSKRKHWVVAEILRKARIYEPPSQ NQ VSDKS VSAPSTT
Sbjct: 61  RPLSKRKHWVVAEILRKARIYEPPSQDNQTVSDKSNVSAPSTT 103

[Close]
BLAST of Cla97C07G134100 vs. NCBI nr
Match: XP_022989005.1 (uncharacterized protein LOC111486195 [Cucurbita maxima] >XP_022989013.1 uncharacterized protein LOC111486195 [Cucurbita maxima])

HSP 1 Score: 192.6 bits (488), Expect = 6.7e-46
Identity = 97/103 (94.17%), Postives = 99/103 (96.12%), Query Frame = 0 

Query: 1   MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPS 60
           MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPS
Sbjct: 1   MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPS 60

Query: 61  RPLSKRKHWVVAEILRKARIYEPPSQANQIVSDKSQVSAPSTT 104
           RPLSK K WVVAEILRKARIYEPPSQ NQ+VSDK +VSAPSTT
Sbjct: 61  RPLSKHKRWVVAEILRKARIYEPPSQENQVVSDKGKVSAPSTT 103

[Close]
BLAST of Cla97C07G134100 vs. NCBI nr
Match: XP_004137152.1 (PREDICTED: 30S ribosomal protein S17, chloroplastic [Cucumis sativus] >XP_011653397.1 PREDICTED: 30S ribosomal protein S17, chloroplastic [Cucumis sativus])

HSP 1 Score: 192.2 bits (487), Expect = 8.7e-46
Identity = 98/103 (95.15%), Postives = 98/103 (95.15%), Query Frame = 0 

Query: 1   MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPS 60
           MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPS
Sbjct: 1   MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPS 60

Query: 61  RPLSKRKHWVVAEILRKARIYEPPSQANQIVSDKSQVSAPSTT 104
           RPLSK KHWVVAEILRKARIYEPPSQ  Q VSDKS VSAPSTT
Sbjct: 61  RPLSKHKHWVVAEILRKARIYEPPSQDKQSVSDKSNVSAPSTT 103

[Close]
BLAST of Cla97C07G134100 vs. NCBI nr
Match: XP_022943007.1 (uncharacterized protein LOC111447872 [Cucurbita moschata] >XP_022943008.1 uncharacterized protein LOC111447872 [Cucurbita moschata] >XP_023549349.1 uncharacterized protein LOC111807726 isoform X1 [Cucurbita pepo subsp. pepo] >XP_023549358.1 uncharacterized protein LOC111807726 isoform X1 [Cucurbita pepo subsp. pepo] >XP_023549366.1 uncharacterized protein LOC111807726 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 191.4 bits (485), Expect = 1.5e-45
Identity = 96/103 (93.20%), Postives = 99/103 (96.12%), Query Frame = 0 

Query: 1   MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPS 60
           MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPS
Sbjct: 1   MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPS 60

Query: 61  RPLSKRKHWVVAEILRKARIYEPPSQANQIVSDKSQVSAPSTT 104
           RPLSK K WVVAEILRKARIY+PPSQ NQ+VSDK +VSAPSTT
Sbjct: 61  RPLSKHKRWVVAEILRKARIYQPPSQENQVVSDKGKVSAPSTT 103

[Close]
BLAST of Cla97C07G134100 vs. NCBI nr
Match: XP_022155383.1 (uncharacterized protein LOC111022528 [Momordica charantia])

HSP 1 Score: 184.5 bits (467), Expect = 1.8e-43
Identity = 93/103 (90.29%), Postives = 97/103 (94.17%), Query Frame = 0 

Query: 1   MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPS 60
           MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPS
Sbjct: 1   MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPS 60

Query: 61  RPLSKRKHWVVAEILRKARIYEPPSQANQIVSDKSQVSAPSTT 104
           RPLSK KHW+VAEILRKARIY PPSQ +Q  SDKS+ +APSTT
Sbjct: 61  RPLSKHKHWMVAEILRKARIYVPPSQDSQTSSDKSKAAAPSTT 103

[Close]
BLAST of Cla97C07G134100 vs. TrEMBL
Match: tr|A0A1S4E5I9|A0A1S4E5I9_CUCME (30S ribosomal protein S17-like OS=Cucumis melo OX=3656 GN=LOC107992092 PE=3 SV=1)

HSP 1 Score: 196.8 bits (499), Expect = 2.3e-47
Identity = 100/103 (97.09%), Postives = 100/103 (97.09%), Query Frame = 0 

Query: 1   MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPS 60
           MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPS
Sbjct: 1   MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPS 60

Query: 61  RPLSKRKHWVVAEILRKARIYEPPSQANQIVSDKSQVSAPSTT 104
           RPLSKRKHWVVAEILRKARIYEPPSQ NQ VSDKS VSAPSTT
Sbjct: 61  RPLSKRKHWVVAEILRKARIYEPPSQDNQTVSDKSNVSAPSTT 103

[Close]
BLAST of Cla97C07G134100 vs. TrEMBL
Match: tr|A0A2P5FPC0|A0A2P5FPC0_9ROSA (Ribosomal protein OS=Trema orientalis OX=63057 GN=TorRG33x02_047830 PE=3 SV=1)

HSP 1 Score: 165.6 bits (418), Expect = 5.8e-38
Identity = 86/103 (83.50%), Postives = 93/103 (90.29%), Query Frame = 0 

Query: 1   MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPS 60
           MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRY+KRTSKFMAHDE NQCNIGDRV+LDPS
Sbjct: 193 MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYIKRTSKFMAHDEQNQCNIGDRVRLDPS 252

Query: 61  RPLSKRKHWVVAEILRKARIYEPPSQANQIVSDKSQVSAPSTT 104
           RPLSKRKHWVVAEIL+KARIY PPS A    +  +Q SAPS++
Sbjct: 253 RPLSKRKHWVVAEILKKARIYVPPS-ALDSSNVNAQQSAPSSS 294

[Close]
BLAST of Cla97C07G134100 vs. TrEMBL
Match: tr|A0A2P5DDS6|A0A2P5DDS6_PARAD (Ribosomal protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_072430 PE=3 SV=1)

HSP 1 Score: 165.6 bits (418), Expect = 5.8e-38
Identity = 85/102 (83.33%), Postives = 89/102 (87.25%), Query Frame = 0 

Query: 1   MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPS 60
           MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRY+KRTSKFMAHDE N CNIGDRV+LDPS
Sbjct: 1   MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYIKRTSKFMAHDEQNHCNIGDRVRLDPS 60

Query: 61  RPLSKRKHWVVAEILRKARIYEPPSQANQIVSDKSQVSAPST 103
           RPLSKRKHWVVAEIL+KARIY PPS       D S VSAP +
Sbjct: 61  RPLSKRKHWVVAEILKKARIYVPPS-----ALDSSNVSAPQS 97

[Close]
BLAST of Cla97C07G134100 vs. TrEMBL
Match: tr|A0A2K1ZYQ4|A0A2K1ZYQ4_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_006G080200v3 PE=3 SV=1)

HSP 1 Score: 162.5 bits (410), Expect = 4.9e-37
Identity = 82/103 (79.61%), Postives = 90/103 (87.38%), Query Frame = 0 

Query: 1   MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPS 60
           MK VVGMVVSNKMQKSVVVAVDRLF+HKLYNRYVKRTSKFMAHDENN CNIGDRV+LDPS
Sbjct: 1   MKSVVGMVVSNKMQKSVVVAVDRLFHHKLYNRYVKRTSKFMAHDENNLCNIGDRVRLDPS 60

Query: 61  RPLSKRKHWVVAEILRKARIYEPPSQANQIVSDKSQVSAPSTT 104
           RPLSKRK+WVVAEIL+KARIY PPS A+   S      AP+++
Sbjct: 61  RPLSKRKNWVVAEILKKARIYVPPSAADNAASKTKGAEAPTSS 103

[Close]
BLAST of Cla97C07G134100 vs. TrEMBL
Match: tr|A0A061E6G1|A0A061E6G1_THECC (Nucleic acid-binding, OB-fold-like protein isoform 1 OS=Theobroma cacao OX=3641 GN=TCM_009914 PE=3 SV=1)

HSP 1 Score: 161.4 bits (407), Expect = 1.1e-36
Identity = 81/103 (78.64%), Postives = 90/103 (87.38%), Query Frame = 0 

Query: 1   MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPS 60
           MK VVG+VVSNKMQKSVVVAVDRLF+HKLYNRYVKRTSKFMAHDEN+QCNIGDRVKLDPS
Sbjct: 1   MKSVVGVVVSNKMQKSVVVAVDRLFHHKLYNRYVKRTSKFMAHDENDQCNIGDRVKLDPS 60

Query: 61  RPLSKRKHWVVAEILRKARIYEPPSQANQIVSDKSQVSAPSTT 104
           RPLSKRKHWVVAE+L+KARIY PPS      ++    + PS+T
Sbjct: 61  RPLSKRKHWVVAEVLKKARIYVPPSMDKAANANFKNEAPPSST 103

[Close]
BLAST of Cla97C07G134100 vs. Swiss-Prot
Match: sp|A7HM43|RS17_FERNB (30S ribosomal protein S17 OS=Fervidobacterium nodosum (strain ATCC 35602 / DSM 5306 / Rt17-B1) OX=381764 GN=rpsQ PE=3 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 5.6e-20
Identity = 46/83 (55.42%), Postives = 62/83 (74.70%), Query Frame = 0 

Query: 2  KQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSR 61
          K++VG+VVS+KM K+V V V+RL  H  + +YVKRT KF AHDENN C +GD V+++ SR
Sbjct: 4  KRLVGVVVSDKMDKTVTVKVERLVKHAKFGKYVKRTKKFYAHDENNACRVGDVVEIEESR 63

Query: 62 PLSKRKHWVVAEILRKARIYEPP 85
          PLSK K WVV  IL ++++ E P
Sbjct: 64 PLSKLKRWVVVNILERSKLSETP 86

[Close]
BLAST of Cla97C07G134100 vs. Swiss-Prot
Match: sp|B1I1J7|RS17_DESAP (30S ribosomal protein S17 OS=Desulforudis audaxviator (strain MP104C) OX=477974 GN=rpsQ PE=3 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 7.3e-20
Identity = 47/75 (62.67%), Postives = 59/75 (78.67%), Query Frame = 0 

Query: 6  GMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSK 65
          G VVS+KM K+VVVAVD L  H LY R V+RT KFMAHDE+NQC IGD+VK+  +RPLS+
Sbjct: 11 GRVVSDKMDKTVVVAVDTLVKHPLYGRTVRRTRKFMAHDEDNQCRIGDKVKIAETRPLSR 70

Query: 66 RKHWVVAEILRKARI 81
           K W VAE+L +++I
Sbjct: 71 HKRWRVAEVLERSQI 85

[Close]
BLAST of Cla97C07G134100 vs. Swiss-Prot
Match: sp|Q6LVA7|RS17_PHOPR (30S ribosomal protein S17 OS=Photobacterium profundum (strain SS9) OX=298386 GN=rpsQ PE=3 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 1.1e-18
Identity = 40/76 (52.63%), Postives = 58/76 (76.32%), Query Frame = 0 

Query: 5  VGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLS 64
          +G V+S+KM KS+VVA++R+  H +Y +Y+KRT+K  AHDENN+CN+GD V++   RPLS
Sbjct: 9  LGRVISSKMDKSIVVAIERMVKHPMYGKYIKRTTKLHAHDENNECNLGDTVEVRECRPLS 68

Query: 65 KRKHWVVAEILRKARI 81
          K K W +  I+ KAR+
Sbjct: 69 KTKSWTLVRIVEKARV 84

[Close]
BLAST of Cla97C07G134100 vs. Swiss-Prot
Match: sp|Q1LTC9|RS17_BAUCH (30S ribosomal protein S17 OS=Baumannia cicadellinicola subsp. Homalodisca coagulata OX=374463 GN=rpsQ PE=3 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 1.4e-18
Identity = 40/73 (54.79%), Postives = 55/73 (75.34%), Query Frame = 0 

Query: 6  GMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLSK 65
          G VVSNKM KS+VVA++R+  H +Y +Y+KRT+K  AHDENN CNIGD +++   RP+SK
Sbjct: 15 GRVVSNKMDKSIVVAIERIIKHPIYGKYIKRTTKIHAHDENNACNIGDLIEIKECRPISK 74

Query: 66 RKHWVVAEILRKA 79
           K W++  I+ KA
Sbjct: 75 TKSWILIRIIEKA 87

[Close]
BLAST of Cla97C07G134100 vs. Swiss-Prot
Match: sp|Q8R7W3|RS17_CALS4 (30S ribosomal protein S17 OS=Caldanaerobacter subterraneus subsp. tengcongensis (strain DSM 15242 / JCM 11007 / NBRC 100824 / MB4) OX=273068 GN=rpsQ PE=3 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 1.4e-18
Identity = 43/74 (58.11%), Postives = 56/74 (75.68%), Query Frame = 0 

Query: 5  VGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPSRPLS 64
          +G VVSNKMQK++VVAV+  F H LY + VKRT K+  HDENN CN+GD VK+  +RPLS
Sbjct: 10 IGTVVSNKMQKTIVVAVEDKFRHPLYGKIVKRTKKYKVHDENNICNVGDVVKIMETRPLS 69

Query: 65 KRKHWVVAEILRKA 79
          K K W + E+++KA
Sbjct: 70 KEKRWRLVEVIKKA 83

[Close]
BLAST of Cla97C07G134100 vs. TAIR10
Match: AT1G49400.1 (Nucleic acid-binding, OB-fold-like protein)

HSP 1 Score: 143.7 bits (361), Expect = 6.5e-35
Identity = 68/83 (81.93%), Postives = 77/83 (92.77%), Query Frame = 0 

Query: 1  MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPS 60
          MK V+G VVSNKMQKSVVVAVDRLF++K+YNRYVKRTSKFMAHD+ + CNIGDRVKLDPS
Sbjct: 1  MKPVIGTVVSNKMQKSVVVAVDRLFHNKIYNRYVKRTSKFMAHDDKDACNIGDRVKLDPS 60

Query: 61 RPLSKRKHWVVAEILRKARIYEP 84
          RPLSK KHW+VAEI++KARIY P
Sbjct: 61 RPLSKNKHWIVAEIIKKARIYSP 83

[Close]
BLAST of Cla97C07G134100 vs. TAIR10
Match: AT3G18880.1 (Nucleic acid-binding, OB-fold-like protein)

HSP 1 Score: 141.7 bits (356), Expect = 2.5e-34
Identity = 70/100 (70.00%), Postives = 81/100 (81.00%), Query Frame = 0 

Query: 1   MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPS 60
           MK V+G VVSNKMQ SVVVAVDRLF++ +YNRYVKRTSKFMAHDE + CNIGDRVKLDPS
Sbjct: 1   MKAVIGTVVSNKMQMSVVVAVDRLFHNNIYNRYVKRTSKFMAHDEKDSCNIGDRVKLDPS 60

Query: 61  RPLSKRKHWVVAEILRKARIYEPPSQANQIVSDKSQVSAP 101
           RPLSK KHW+V+EI++KARIY P + A  + S  S    P
Sbjct: 61  RPLSKHKHWIVSEIIKKARIYSPQAAAAALNSSTSIAEQP 100

[Close]
BLAST of Cla97C07G134100 vs. TAIR10
Match: AT1G79850.1 (ribosomal protein S17)

HSP 1 Score: 60.8 bits (146), Expect = 5.5e-10
Identity = 33/78 (42.31%), Postives = 46/78 (58.97%), Query Frame = 0 

Query: 1   MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPS 60
           MK + G VV     K+V V V RL  H  Y R V+   K+ AHD +NQ  +GD V+L+ S
Sbjct: 50  MKTMQGRVVCATSDKTVAVEVVRLAPHPKYKRRVRMKKKYQAHDPDNQFKVGDVVRLEKS 109

Query: 61  RPLSKRKHWVVAEILRKA 79
           RP+SK K +V   ++ +A
Sbjct: 110 RPISKTKSFVALPVIARA 127

[Close]
BLAST of Cla97C07G134100 vs. TAIR10
Match: AT4G30800.1 (Nucleic acid-binding, OB-fold-like protein)

HSP 1 Score: 42.7 bits (99), Expect = 1.6e-04
Identity = 27/71 (38.03%), Postives = 38/71 (53.52%), Query Frame = 0 

Query: 6   GMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAH-DENNQCNIGDRVKLDPSRPLS 65
           G   S KMQ++++V  D L + K Y RY KR S   AH     +   GDRV +   RPLS
Sbjct: 74  GTCHSAKMQRTIIVRRDYLHFVKKYRRYEKRHSNIPAHVSPCFRVKEGDRVTIGQCRPLS 133

Query: 66  KRKHWVVAEIL 76
           K   + V +++
Sbjct: 134 KTVRFNVLKVI 144

The following BLAST results are available for this feature:
BLAST of Cla97C07G134100 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_016903240.13.5e-4797.09PREDICTED: 30S ribosomal protein S17-like [Cucumis melo][more]
XP_022989005.16.7e-4694.17uncharacterized protein LOC111486195 [Cucurbita maxima] >XP_022989013.1 uncharac... [more]
XP_004137152.18.7e-4695.15PREDICTED: 30S ribosomal protein S17, chloroplastic [Cucumis sativus] >XP_011653... [more]
XP_022943007.11.5e-4593.20uncharacterized protein LOC111447872 [Cucurbita moschata] >XP_022943008.1 unchar... [more]
XP_022155383.11.8e-4390.29uncharacterized protein LOC111022528 [Momordica charantia][more]
BLAST of Cla97C07G134100 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S4E5I9|A0A1S4E5I9_CUCME2.3e-4797.0930S ribosomal protein S17-like OS=Cucumis melo OX=3656 GN=LOC107992092 PE=3 SV=1[more]
tr|A0A2P5FPC0|A0A2P5FPC0_9ROSA5.8e-3883.50Ribosomal protein OS=Trema orientalis OX=63057 GN=TorRG33x02_047830 PE=3 SV=1[more]
tr|A0A2P5DDS6|A0A2P5DDS6_PARAD5.8e-3883.33Ribosomal protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_072430 PE=3 SV=... [more]
tr|A0A2K1ZYQ4|A0A2K1ZYQ4_POPTR4.9e-3779.61Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_006G080200v3 PE=... [more]
tr|A0A061E6G1|A0A061E6G1_THECC1.1e-3678.64Nucleic acid-binding, OB-fold-like protein isoform 1 OS=Theobroma cacao OX=3641 ... [more]
BLAST of Cla97C07G134100 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|A7HM43|RS17_FERNB5.6e-2055.4230S ribosomal protein S17 OS=Fervidobacterium nodosum (strain ATCC 35602 / DSM 5... [more]
sp|B1I1J7|RS17_DESAP7.3e-2062.6730S ribosomal protein S17 OS=Desulforudis audaxviator (strain MP104C) OX=477974 ... [more]
sp|Q6LVA7|RS17_PHOPR1.1e-1852.6330S ribosomal protein S17 OS=Photobacterium profundum (strain SS9) OX=298386 GN=... [more]
sp|Q1LTC9|RS17_BAUCH1.4e-1854.7930S ribosomal protein S17 OS=Baumannia cicadellinicola subsp. Homalodisca coagul... [more]
sp|Q8R7W3|RS17_CALS41.4e-1858.1130S ribosomal protein S17 OS=Caldanaerobacter subterraneus subsp. tengcongensis ... [more]
BLAST of Cla97C07G134100 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G49400.16.5e-3581.93Nucleic acid-binding, OB-fold-like protein[more]
AT3G18880.12.5e-3470.00Nucleic acid-binding, OB-fold-like protein[more]
AT1G79850.15.5e-1042.31ribosomal protein S17[more]
AT4G30800.11.6e-0438.03Nucleic acid-binding, OB-fold-like protein[more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
GO:0005840ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: INTERPRO
TermDefinition
IPR012340NA-bd_OB-fold
IPR019984Ribosomal_S17
IPR000266Ribosomal_S17/S11
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0051252 regulation of RNA metabolic process
biological_process GO:0090502 RNA phosphodiester bond hydrolysis, endonucleolytic
cellular_component GO:0005622 intracellular
cellular_component GO:0005840 ribosome
cellular_component GO:0022627 cytosolic small ribosomal subunit
molecular_function GO:0003735 structural constituent of ribosome
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0004523 RNA-DNA hybrid ribonuclease activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla97C07G134100.1Cla97C07G134100.1mRNA


InterPro
Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000266Ribosomal protein S17/S11PRINTSPR00973RIBOSOMALS17coord: 52..62
score: 49.27
coord: 62..69
score: 61.5
coord: 20..43
score: 37.58
IPR000266Ribosomal protein S17/S11PFAMPF00366Ribosomal_S17coord: 6..73
e-value: 4.1E-32
score: 110.0
IPR000266Ribosomal protein S17/S11PANTHERPTHR1074440S RIBOSOMAL PROTEIN S11 FAMILY MEMBERcoord: 2..83
IPR000266Ribosomal protein S17/S11PRODOMPD001295coord: 4..71
e-value: 2.0E-31
score: 333.0
NoneNo IPR availableGENE3DG3DSA:2.40.50.140coord: 1..99
e-value: 8.7E-36
score: 123.7
NoneNo IPR availablePANTHERPTHR10744:SF137S RIBOSOMAL PROTEIN S17, MITOCHONDRIALcoord: 2..83
IPR01998430S ribosomal protein S17TIGRFAMTIGR03635TIGR03635coord: 2..71
e-value: 3.9E-31
score: 104.9
IPR01998430S ribosomal protein S17HAMAPMF_01345_BRibosomal_S17_Bcoord: 1..76
score: 22.205
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILYSSF50249Nucleic acid-binding proteinscoord: 2..84

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cla97C07G134100Cla011721Watermelon (97103) v1wmwmbB170
Cla97C07G134100MELO3C026421Melon (DHL92) v3.5.1mewmbB070
Cla97C07G134100ClCG07G006010Watermelon (Charleston Gray)wcgwmbB307
Cla97C07G134100CmaCh04G010080Cucurbita maxima (Rimu)cmawmbB780
Cla97C07G134100CmoCh04G010870Cucurbita moschata (Rifu)cmowmbB754
Cla97C07G134100Lsi04G011240Bottle gourd (USVL1VR-Ls)lsiwmbB297
Cla97C07G134100MELO3C026421.2Melon (DHL92) v3.6.1medwmbB065
Cla97C07G134100Carg00120Silver-seed gourdcarwmbB0700
Cla97C07G134100Bhi07G000306Wax gourdwgowmbB538
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cla97C07G134100Silver-seed gourdcarwmbB0183
Cla97C07G134100Cucumber (Gy14) v2cgybwmbB381
Cla97C07G134100Cucumber (Gy14) v1cgywmbB271
Cla97C07G134100Cucurbita maxima (Rimu)cmawmbB779
Cla97C07G134100Cucurbita maxima (Rimu)cmawmbB781
Cla97C07G134100Cucurbita moschata (Rifu)cmowmbB753
Cla97C07G134100Cucurbita moschata (Rifu)cmowmbB755
Cla97C07G134100Wild cucumber (PI 183967)cpiwmbB419
Cla97C07G134100Cucumber (Chinese Long) v3cucwmbB415
Cla97C07G134100Cucumber (Chinese Long) v2cuwmbB398
Cla97C07G134100Melon (DHL92) v3.5.1mewmbB032
Cla97C07G134100Watermelon (Charleston Gray)wcgwmbB120
Cla97C07G134100Watermelon (97103) v1wmwmbB278
Cla97C07G134100Watermelon (97103) v1wmwmbB180
Cla97C07G134100Wax gourdwgowmbB105