CmoCh04G009860 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh04G009860
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
Description(Lhcb2 protein) (Light harvesting chlorophyll a/b-binding protein) (Photosystem II light harvesting complex protein 2.3)
LocationCmo_Chr04 : 4982617 .. 4983898 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCGATGGCCGCCACCTCCACCGCCATCCTCCGCCCCACCCCTTTTCTCGGCCAAAACAGAGCCCCTTCCAATAACTCCCTCAGAGATGTCGTCGCCATGGGAACTCCAAAATACACCATGGTCCCGACCCCTTTCGTTTTTTTCTCTCTCCCTATCTTTGCTTCCTTTTTGTCTTATGGAGTATTGAAATTGATGATGTTTTCTTCTTTTTTTCAATTTTGAATAGGGAAATGAACTGTGGTATGGACCAGACAGAGTCAAGTACTTGGGGCCGTTTTCCGCTCAGACTCCCTCCTACTTGAACGGAGAGTTCCCCGGCGATTATGGATGGGACACTGCTGGGTTGTCCGCCGATCCCGAGGCCTTCGCCAAGAACAGAGCTCTTGAGGTAATTCCCATCCCCATCCTTACTTAAGAATTAATTAAGGTATTAATTTGATGAATTCAAATTTTGATTTACATATGGTCGAACGGAATTGCAGGTAATCCACGGGAGGTGGGCGATGTTGGGAGCCTTCGGGTGCATAACACCAGAGGTGCTAGAAAAATGGTTGAAAGTGGACTTCAAGGAGCCAGTCTGGTTCAAGGCCGGAGCCCAGATCTTCTCAGAAGGGGGGCTCGACTACTTGGGGAACCCCAACCTGGTGCACGCCCAGAGCATCCTAGCCGTTTTGGGTTTCCAAGTGGTCCTAATGGGGCTGGTTGAAGGGTTCCGCATCAACGGGCTGGACGGCGTGGGCGAAGGCAACGACCTGTACCCGGGGGGTCAGTACTTCGACCCACTCGGACTGGCCGACGACCCCGTCACCTTCGCCGAGCTGAAGGTGAAGGAGATCAAGAACGGGCGGCTGGCCATGTTCTCCATGTTCGGGTTCTTTGTCCAGGCCATCGTGACTGGGAAAGGCCCCCTCGAGAACCTTCTGGACCATCTCGATAACCCTGTGGCCAACAATGCTTGGGTTTACGCCACCAAGTTTGCCCCTGGCTCATAATTAAGCGATGTGTGGTGGGTTTGGTCGATCAGAAGGCTGTGGATGTGATTATTATTAGAAGTTAGAAGGCTGAGTAATGGATTTATGGAATGATTATTCTTAATCTTATTTACATCATTTAATTTAGATCGAATCGGTTATCACAATACCGTGGTTTGATTTAATTTAATTTATTTTATATTGATATATACCAAACCAAAAATTATGATTCTTCTCTTTATGCAAAAGAAAAAATTACACATAAAAGTCGAAAATATGATGAGCCAATATTGATATTTAAACCCATA

mRNA sequence

ATGTCGATGGCCGCCACCTCCACCGCCATCCTCCGCCCCACCCCTTTTCTCGGCCAAAACAGAGCCCCTTCCAATAACTCCCTCAGAGATGTCGTCGCCATGGGAACTCCAAAATACACCATGGTCCCGACCCCTTTCGGAAATGAACTGTGGTATGGACCAGACAGAGTCAAGTACTTGGGGCCGTTTTCCGCTCAGACTCCCTCCTACTTGAACGGAGAGTTCCCCGGCGATTATGGATGGGACACTGCTGGGTTGTCCGCCGATCCCGAGGCCTTCGCCAAGAACAGAGCTCTTGAGGTAATCCACGGGAGGTGGGCGATGTTGGGAGCCTTCGGGTGCATAACACCAGAGGTGCTAGAAAAATGGTTGAAAGTGGACTTCAAGGAGCCAGTCTGGTTCAAGGCCGGAGCCCAGATCTTCTCAGAAGGGGGGCTCGACTACTTGGGGAACCCCAACCTGGTGCACGCCCAGAGCATCCTAGCCGTTTTGGGTTTCCAAGTGGTCCTAATGGGGCTGGTTGAAGGGTTCCGCATCAACGGGCTGGACGGCGTGGGCGAAGGCAACGACCTGTACCCGGGGGGTCAGTACTTCGACCCACTCGGACTGGCCGACGACCCCGTCACCTTCGCCGAGCTGAAGGTGAAGGAGATCAAGAACGGGCGGCTGGCCATGTTCTCCATGTTCGGGTTCTTTGTCCAGGCCATCGTGACTGGGAAAGGCCCCCTCGAGAACCTTCTGGACCATCTCGATAACCCTGTGGCCAACAATGCTTGGGTTTACGCCACCAAGTTTGCCCCTGGCTCATAATTAAGCGATGTGTGGTGGGTTTGGTCGATCAGAAGGCTGTGGATGTGATTATTATTAGAAGTTAGAAGGCTGAGTAATGGATTTATGGAATGATTATTCTTAATCTTATTTACATCATTTAATTTAGATCGAATCGGTTATCACAATACCGTGGTTTGATTTAATTTAATTTATTTTATATTGATATATACCAAACCAAAAATTATGATTCTTCTCTTTATGCAAAAGAAAAAATTACACATAAAAGTCGAAAATATGATGAGCCAATATTGATATTTAAACCCATA

Coding sequence (CDS)

ATGTCGATGGCCGCCACCTCCACCGCCATCCTCCGCCCCACCCCTTTTCTCGGCCAAAACAGAGCCCCTTCCAATAACTCCCTCAGAGATGTCGTCGCCATGGGAACTCCAAAATACACCATGGTCCCGACCCCTTTCGGAAATGAACTGTGGTATGGACCAGACAGAGTCAAGTACTTGGGGCCGTTTTCCGCTCAGACTCCCTCCTACTTGAACGGAGAGTTCCCCGGCGATTATGGATGGGACACTGCTGGGTTGTCCGCCGATCCCGAGGCCTTCGCCAAGAACAGAGCTCTTGAGGTAATCCACGGGAGGTGGGCGATGTTGGGAGCCTTCGGGTGCATAACACCAGAGGTGCTAGAAAAATGGTTGAAAGTGGACTTCAAGGAGCCAGTCTGGTTCAAGGCCGGAGCCCAGATCTTCTCAGAAGGGGGGCTCGACTACTTGGGGAACCCCAACCTGGTGCACGCCCAGAGCATCCTAGCCGTTTTGGGTTTCCAAGTGGTCCTAATGGGGCTGGTTGAAGGGTTCCGCATCAACGGGCTGGACGGCGTGGGCGAAGGCAACGACCTGTACCCGGGGGGTCAGTACTTCGACCCACTCGGACTGGCCGACGACCCCGTCACCTTCGCCGAGCTGAAGGTGAAGGAGATCAAGAACGGGCGGCTGGCCATGTTCTCCATGTTCGGGTTCTTTGTCCAGGCCATCGTGACTGGGAAAGGCCCCCTCGAGAACCTTCTGGACCATCTCGATAACCCTGTGGCCAACAATGCTTGGGTTTACGCCACCAAGTTTGCCCCTGGCTCATAA
Homology
[Close]
BLAST of CmoCh04G009860 vs. Swiss-Prot
Match: CB3_ARATH (Chlorophyll a-b binding protein 3, chloroplastic OS=Arabidopsis thaliana GN=LHCB3 PE=1 SV=1)

HSP 1 Score: 501.5 bits (1290), Expect = 5.7e-141
Identity = 235/268 (87.69%), Postives = 251/268 (93.66%), Query Frame = 1 

Query: 2   SMAATSTAILRPTPFLGQNRAPSNNSLRDVVAMGTPKYTMVPTPFGNELWYGPDRVKYLG 61
           S   +S+++L PT FLGQ +A S N LRDVV++G+PKYTM     GN+LWYGPDRVKYLG
Sbjct: 3   STFTSSSSVLTPTTFLGQTKASSFNPLRDVVSLGSPKYTM-----GNDLWYGPDRVKYLG 62

Query: 62  PFSAQTPSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGAFGCITPEVLE 121
           PFS QTPSYL GEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGAFGCITPEVL+
Sbjct: 63  PFSVQTPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGAFGCITPEVLQ 122

Query: 122 KWLKVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRING 181
           KW++VDFKEPVWFKAG+QIFSEGGLDYLGNPNLVHAQSILAVLGFQV+LMGLVEGFRING
Sbjct: 123 KWVRVDFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVILMGLVEGFRING 182

Query: 182 LDGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 241
           LDGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG
Sbjct: 183 LDGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 242

Query: 242 PLENLLDHLDNPVANNAWVYATKFAPGS 270
           PLENLLDHLDNPVANNAW +ATKFAPG+
Sbjct: 243 PLENLLDHLDNPVANNAWAFATKFAPGA 265

[Close]
BLAST of CmoCh04G009860 vs. Swiss-Prot
Match: CB23_SOLLC (Chlorophyll a-b binding protein 13, chloroplastic OS=Solanum lycopersicum GN=CAB13 PE=1 SV=1)

HSP 1 Score: 490.7 bits (1262), Expect = 1.0e-137
Identity = 233/269 (86.62%), Postives = 248/269 (92.19%), Query Frame = 1 

Query: 1   MSMAATSTAILRPTPFLGQNRAPSNNSLRDVVAMGTPKYTMVPTPFGNELWYGPDRVKYL 60
           M+  A+ST +++ TPFLGQ +  + N LRDVVAMG+ ++TM      N+LWYGPDRVKYL
Sbjct: 4   MAATASSTTVVKATPFLGQTK--NANPLRDVVAMGSARFTM-----SNDLWYGPDRVKYL 63

Query: 61  GPFSAQTPSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGAFGCITPEVL 120
           GPFSAQTPSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGA GCI PEVL
Sbjct: 64  GPFSAQTPSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCIFPEVL 123

Query: 121 EKWLKVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRIN 180
           EKW+KVDFKEPVWFKAG+QIFS+GGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRIN
Sbjct: 124 EKWVKVDFKEPVWFKAGSQIFSDGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRIN 183

Query: 181 GLDGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGK 240
           GL GVGEGNDLYPGGQYFDPLGLADDP TFAELKVKEIKNGRLAMFSMFGFFVQAIVTGK
Sbjct: 184 GLPGVGEGNDLYPGGQYFDPLGLADDPTTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGK 243

Query: 241 GPLENLLDHLDNPVANNAWVYATKFAPGS 270
           GPLENLLDHLDNPVANNAWVYATKF PG+
Sbjct: 244 GPLENLLDHLDNPVANNAWVYATKFVPGA 265

[Close]
BLAST of CmoCh04G009860 vs. Swiss-Prot
Match: CB23_HORVU (Chlorophyll a-b binding protein of LHCII type III, chloroplastic OS=Hordeum vulgare GN=LHBC PE=2 SV=1)

HSP 1 Score: 479.6 bits (1233), Expect = 2.3e-134
Identity = 229/268 (85.45%), Postives = 244/268 (91.04%), Query Frame = 1 

Query: 3   MAATSTAILRPTPFL-GQNRAPSNNSLRDVVAMGTPKYTMVPTPFGNELWYGPDRVKYLG 62
           MAA S A++  TPFL GQ RA S + LRD+ A    + TM     GN+LWYGPDRVKYLG
Sbjct: 6   MAAASRAVVAKTPFLSGQGRAASASPLRDIAAATNGRITM-----GNDLWYGPDRVKYLG 65

Query: 63  PFSAQTPSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGAFGCITPEVLE 122
           PFSAQTPSYLNGEFPGDYGWDTAGLSADPEAFA+NRALEVIHGRWAMLGA GC+ PEVL+
Sbjct: 66  PFSAQTPSYLNGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCVFPEVLQ 125

Query: 123 KWLKVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRING 182
           KW+ V+FKEPVWFKAG+QIFSEGGLDYLGNPNLVHAQSILAVLGFQV+LMGLVEGFRING
Sbjct: 126 KWVGVEFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVLLMGLVEGFRING 185

Query: 183 LDGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 242
           LDGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG
Sbjct: 186 LDGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 245

Query: 243 PLENLLDHLDNPVANNAWVYATKFAPGS 270
           PLENL DHLD+PVANNAWV+ATKFAPGS
Sbjct: 246 PLENLFDHLDDPVANNAWVFATKFAPGS 268

[Close]
BLAST of CmoCh04G009860 vs. Swiss-Prot
Match: CB23_ORYSI (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. indica GN=OsI_012078 PE=2 SV=1)

HSP 1 Score: 364.8 bits (935), Expect = 8.3e-100
Identity = 186/265 (70.19%), Postives = 205/265 (77.36%), Query Frame = 1 

Query: 7   STAILRPTPFLGQNRAPSNNSLRDVVAMGTPKYTMVPTPFG--NELWYGPDRVKYLGPFS 66
           ++A+ + T FLG   AP  + L   V     + TM  T       +WYGPDR KYLGPFS
Sbjct: 3   ASALHQTTSFLGT--APRRDELVRRVGDSGGRITMRRTVKSAPQSIWYGPDRPKYLGPFS 62

Query: 67  AQTPSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGAFGCITPEVLEKWL 126
            QTPSYL GEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLGA GC+ PE+L K  
Sbjct: 63  EQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEILSK-N 122

Query: 127 KVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLDG 186
            V F E VWFKAGAQIFSEGGLDYLGNPNLVHAQSILA+   QVVLMG VEG+R+ G   
Sbjct: 123 GVKFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWAVQVVLMGFVEGYRVGG-GP 182

Query: 187 VGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL 246
           +GEG D +YPGG  FDPLGLADDP TFAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+
Sbjct: 183 LGEGLDKVYPGGA-FDPLGLADDPDTFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPI 242

Query: 247 ENLLDHLDNPVANNAWVYATKFAPG 269
           ENL DH+ +PVANNAW YAT F PG
Sbjct: 243 ENLFDHVADPVANNAWAYATNFVPG 262

[Close]
BLAST of CmoCh04G009860 vs. Swiss-Prot
Match: CB23_ORYSJ (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. japonica GN=RCABP89 PE=2 SV=1)

HSP 1 Score: 364.8 bits (935), Expect = 8.3e-100
Identity = 186/265 (70.19%), Postives = 205/265 (77.36%), Query Frame = 1 

Query: 7   STAILRPTPFLGQNRAPSNNSLRDVVAMGTPKYTMVPTPFG--NELWYGPDRVKYLGPFS 66
           ++A+ + T FLG   AP  + L   V     + TM  T       +WYGPDR KYLGPFS
Sbjct: 3   ASALHQTTSFLGT--APRRDELVRRVGDSGGRITMRRTVKSAPQSIWYGPDRPKYLGPFS 62

Query: 67  AQTPSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGAFGCITPEVLEKWL 126
            QTPSYL GEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLGA GC+ PE+L K  
Sbjct: 63  EQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEILSK-N 122

Query: 127 KVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLDG 186
            V F E VWFKAGAQIFSEGGLDYLGNPNLVHAQSILA+   QVVLMG VEG+R+ G   
Sbjct: 123 GVKFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWAVQVVLMGFVEGYRVGG-GP 182

Query: 187 VGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL 246
           +GEG D +YPGG  FDPLGLADDP TFAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+
Sbjct: 183 LGEGLDKVYPGGA-FDPLGLADDPDTFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPI 242

Query: 247 ENLLDHLDNPVANNAWVYATKFAPG 269
           ENL DH+ +PVANNAW YAT F PG
Sbjct: 243 ENLFDHVADPVANNAWAYATNFVPG 262

[Close]
BLAST of CmoCh04G009860 vs. TrEMBL
Match: W9RGN8_9ROSA (Chlorophyll a-b binding protein, chloroplastic OS=Morus notabilis GN=L484_018739 PE=3 SV=1)

HSP 1 Score: 519.2 bits (1336), Expect = 2.9e-144
Identity = 248/269 (92.19%), Postives = 254/269 (94.42%), Query Frame = 1 

Query: 1   MSMAATSTAILRPTPFLGQNRAPSNNSLRDVVAMGTPKYTMVPTPFGNELWYGPDRVKYL 60
           M+  A+S+A+LRPTPFLGQNR  S+ SLRDVV MGT KYTM     GNELWYGPDRVKYL
Sbjct: 1   MAATASSSALLRPTPFLGQNRGQSSTSLRDVVPMGTGKYTM-----GNELWYGPDRVKYL 60

Query: 61  GPFSAQTPSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGAFGCITPEVL 120
           GPFSAQTPSYL GEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGA GCITPEVL
Sbjct: 61  GPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVL 120

Query: 121 EKWLKVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRIN 180
           EKW+KVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRIN
Sbjct: 121 EKWVKVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRIN 180

Query: 181 GLDGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGK 240
           GLDGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGK
Sbjct: 181 GLDGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGK 240

Query: 241 GPLENLLDHLDNPVANNAWVYATKFAPGS 270
           GPLENLLDHLDNPVANNAWVYATKF PGS
Sbjct: 241 GPLENLLDHLDNPVANNAWVYATKFVPGS 264

[Close]
BLAST of CmoCh04G009860 vs. TrEMBL
Match: M5X1T0_PRUPE (Chlorophyll a-b binding protein, chloroplastic OS=Prunus persica GN=PRUPE_ppa009987mg PE=3 SV=1)

HSP 1 Score: 513.1 bits (1320), Expect = 2.1e-142
Identity = 243/269 (90.33%), Postives = 252/269 (93.68%), Query Frame = 1 

Query: 1   MSMAATSTAILRPTPFLGQNRAPSNNSLRDVVAMGTPKYTMVPTPFGNELWYGPDRVKYL 60
           M+  A+S+ +LRPTPFLGQ R PS N+LRDV  MGT KYTM     GNELWYGPDRVKYL
Sbjct: 6   MAATASSSTLLRPTPFLGQTRGPSFNTLRDVAPMGTGKYTM-----GNELWYGPDRVKYL 65

Query: 61  GPFSAQTPSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGAFGCITPEVL 120
           GPFSAQTPSYL GEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGA GCITPEVL
Sbjct: 66  GPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVL 125

Query: 121 EKWLKVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRIN 180
           EKW++VDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQV+LMGLVEGFRIN
Sbjct: 126 EKWVRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVILMGLVEGFRIN 185

Query: 181 GLDGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGK 240
           GLDGVGEGN+LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGK
Sbjct: 186 GLDGVGEGNNLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGK 245

Query: 241 GPLENLLDHLDNPVANNAWVYATKFAPGS 270
           GPLENLLDHLDNPVANNAWVYATKF PGS
Sbjct: 246 GPLENLLDHLDNPVANNAWVYATKFVPGS 269

[Close]
BLAST of CmoCh04G009860 vs. TrEMBL
Match: A0A0B2RQS6_GLYSO (Chlorophyll a-b binding protein, chloroplastic OS=Glycine soja GN=glysoja_001507 PE=3 SV=1)

HSP 1 Score: 510.4 bits (1313), Expect = 1.4e-141
Identity = 242/267 (90.64%), Postives = 252/267 (94.38%), Query Frame = 1 

Query: 3   MAATSTAILRPTPFLGQNRAPSNNSLRDVVAMGTPKYTMVPTPFGNELWYGPDRVKYLGP 62
           MAATS+  L+ TPFLGQ +  + N+LRDVV+MGT KYTM     GN+LWYGPDRVKYLGP
Sbjct: 6   MAATSSGTLKATPFLGQGKGANANALRDVVSMGTGKYTM-----GNDLWYGPDRVKYLGP 65

Query: 63  FSAQTPSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGAFGCITPEVLEK 122
           FSAQTPSYL GEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGA GCITPEVLEK
Sbjct: 66  FSAQTPSYLKGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLEK 125

Query: 123 WLKVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGL 182
           WL+VDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQV+LMGLVEG+RINGL
Sbjct: 126 WLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVILMGLVEGYRINGL 185

Query: 183 DGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP 242
           DGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP
Sbjct: 186 DGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP 245

Query: 243 LENLLDHLDNPVANNAWVYATKFAPGS 270
           LENLLDHLDNPVANNAWVYATKFAPGS
Sbjct: 246 LENLLDHLDNPVANNAWVYATKFAPGS 267

[Close]
BLAST of CmoCh04G009860 vs. TrEMBL
Match: C6T868_SOYBN (Chlorophyll a-b binding protein, chloroplastic OS=Glycine max GN=GLYMA_13G282000 PE=2 SV=1)

HSP 1 Score: 510.4 bits (1313), Expect = 1.4e-141
Identity = 242/267 (90.64%), Postives = 252/267 (94.38%), Query Frame = 1 

Query: 3   MAATSTAILRPTPFLGQNRAPSNNSLRDVVAMGTPKYTMVPTPFGNELWYGPDRVKYLGP 62
           MAATS+  L+ TPFLGQ +  + N+LRDVV+MGT KYTM     GN+LWYGPDRVKYLGP
Sbjct: 6   MAATSSGTLKATPFLGQGKGANANALRDVVSMGTGKYTM-----GNDLWYGPDRVKYLGP 65

Query: 63  FSAQTPSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGAFGCITPEVLEK 122
           FSAQTPSYL GEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGA GCITPEVLEK
Sbjct: 66  FSAQTPSYLKGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLEK 125

Query: 123 WLKVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGL 182
           WL+VDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQV+LMGLVEG+RINGL
Sbjct: 126 WLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVILMGLVEGYRINGL 185

Query: 183 DGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP 242
           DGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP
Sbjct: 186 DGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP 245

Query: 243 LENLLDHLDNPVANNAWVYATKFAPGS 270
           LENLLDHLDNPVANNAWVYATKFAPGS
Sbjct: 246 LENLLDHLDNPVANNAWVYATKFAPGS 267

[Close]
BLAST of CmoCh04G009860 vs. TrEMBL
Match: A0A0A0L6I8_CUCSA (Chlorophyll a-b binding protein, chloroplastic OS=Cucumis sativus GN=Csa_3G099680 PE=3 SV=1)

HSP 1 Score: 508.4 bits (1308), Expect = 5.2e-141
Identity = 243/269 (90.33%), Postives = 250/269 (92.94%), Query Frame = 1 

Query: 1   MSMAATSTAILRPTPFLGQNRAPSNNSLRDVVAMGTPKYTMVPTPFGNELWYGPDRVKYL 60
           M+  A +  +LR TPFLGQ RA   N LRDVVAMGT KYTM      N+LWYGPDRVKYL
Sbjct: 1   MAATAATATLLRATPFLGQARASPQNPLRDVVAMGTGKYTM-----SNDLWYGPDRVKYL 60

Query: 61  GPFSAQTPSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGAFGCITPEVL 120
           GPFSAQTPSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGA GCITPEVL
Sbjct: 61  GPFSAQTPSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVL 120

Query: 121 EKWLKVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRIN 180
           EKWLKVDFKEPVWFKAG+QIF+EGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRIN
Sbjct: 121 EKWLKVDFKEPVWFKAGSQIFTEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRIN 180

Query: 181 GLDGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGK 240
           GLDGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGK
Sbjct: 181 GLDGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGK 240

Query: 241 GPLENLLDHLDNPVANNAWVYATKFAPGS 270
           GPLENLLDHLD+PVANNAWVYATKFAPGS
Sbjct: 241 GPLENLLDHLDDPVANNAWVYATKFAPGS 264

[Close]
BLAST of CmoCh04G009860 vs. TAIR10
Match: AT5G54270.1 (AT5G54270.1 light-harvesting chlorophyll B-binding protein 3)

HSP 1 Score: 501.5 bits (1290), Expect = 3.2e-142
Identity = 235/268 (87.69%), Postives = 251/268 (93.66%), Query Frame = 1 

Query: 2   SMAATSTAILRPTPFLGQNRAPSNNSLRDVVAMGTPKYTMVPTPFGNELWYGPDRVKYLG 61
           S   +S+++L PT FLGQ +A S N LRDVV++G+PKYTM     GN+LWYGPDRVKYLG
Sbjct: 3   STFTSSSSVLTPTTFLGQTKASSFNPLRDVVSLGSPKYTM-----GNDLWYGPDRVKYLG 62

Query: 62  PFSAQTPSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGAFGCITPEVLE 121
           PFS QTPSYL GEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGAFGCITPEVL+
Sbjct: 63  PFSVQTPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGAFGCITPEVLQ 122

Query: 122 KWLKVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRING 181
           KW++VDFKEPVWFKAG+QIFSEGGLDYLGNPNLVHAQSILAVLGFQV+LMGLVEGFRING
Sbjct: 123 KWVRVDFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVILMGLVEGFRING 182

Query: 182 LDGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 241
           LDGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG
Sbjct: 183 LDGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 242

Query: 242 PLENLLDHLDNPVANNAWVYATKFAPGS 270
           PLENLLDHLDNPVANNAW +ATKFAPG+
Sbjct: 243 PLENLLDHLDNPVANNAWAFATKFAPGA 265

[Close]
BLAST of CmoCh04G009860 vs. TAIR10
Match: AT2G05100.1 (AT2G05100.1 photosystem II light harvesting complex gene 2.1)

HSP 1 Score: 363.2 bits (931), Expect = 1.4e-100
Identity = 184/269 (68.40%), Postives = 206/269 (76.58%), Query Frame = 1 

Query: 7   STAILRPTPFLGQNRA-PSNNSLRDVVAMG----TPKYTMVPTPFGNELWYGPDRVKYLG 66
           +T+ ++ + F GQ    PSN  LR V   G    T + T+  TP    +WYGPDR KYLG
Sbjct: 2   ATSAIQQSSFAGQTALKPSNELLRKVGVSGGGRVTMRRTVKSTP--QSIWYGPDRPKYLG 61

Query: 67  PFSAQTPSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGAFGCITPEVLE 126
           PFS  TPSYL GE+PGDYGWDTAGLSADPE FAKNR LEVIH RWAMLGA GC  PE+L 
Sbjct: 62  PFSENTPSYLTGEYPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCTFPEILS 121

Query: 127 KWLKVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRING 186
           K   V F E VWFKAG+QIFSEGGLDYLGNPNL+HAQSILA+   QVVLMG +EG+RI G
Sbjct: 122 K-NGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWAVQVVLMGFIEGYRIGG 181

Query: 187 LDGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGK 246
              +GEG D LYPGG  FDPL LA+DP  F+ELKVKE+KNGRLAMFSMFGFFVQAIVTGK
Sbjct: 182 -GPLGEGLDPLYPGGA-FDPLNLAEDPEAFSELKVKELKNGRLAMFSMFGFFVQAIVTGK 241

Query: 247 GPLENLLDHLDNPVANNAWVYATKFAPGS 270
           GP+ENL DHL +PVANNAW YAT F PG+
Sbjct: 242 GPIENLFDHLADPVANNAWSYATNFVPGN 265

[Close]
BLAST of CmoCh04G009860 vs. TAIR10
Match: AT2G05070.1 (AT2G05070.1 photosystem II light harvesting complex gene 2.2)

HSP 1 Score: 360.1 bits (923), Expect = 1.1e-99
Identity = 181/268 (67.54%), Postives = 207/268 (77.24%), Query Frame = 1 

Query: 7   STAILRPTPFLGQNRA-PSNNSLRDVVAMG----TPKYTMVPTPFGNELWYGPDRVKYLG 66
           +T+ ++ + F GQ    PS++ ++ V  +G    T + T+  TP    +WYGPDR KYLG
Sbjct: 2   ATSAIQQSSFAGQTALKPSSDLIQKVGVLGGGRVTMRRTVKSTP--QSIWYGPDRPKYLG 61

Query: 67  PFSAQTPSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGAFGCITPEVLE 126
           PFS  TPSYL GE+PGDYGWDTAGLSADPE FAKNR LEVIH RWAMLGA GC  PE+L 
Sbjct: 62  PFSENTPSYLTGEYPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCTFPEILS 121

Query: 127 KWLKVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRING 186
           K   V F E VWFKAG+QIFSEGGLDYLGNPNL+HAQSILA+   QVVLMG +EG+RI G
Sbjct: 122 K-NGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWAVQVVLMGFIEGYRIGG 181

Query: 187 LDGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGK 246
              +GEG D LYPGG  FDPL LA+DP  F+ELKVKE+KNGRLAMFSMFGFFVQAIVTGK
Sbjct: 182 -GPLGEGLDPLYPGGA-FDPLNLAEDPEAFSELKVKELKNGRLAMFSMFGFFVQAIVTGK 241

Query: 247 GPLENLLDHLDNPVANNAWVYATKFAPG 269
           GP+ENL DHL +PVANNAW YAT F PG
Sbjct: 242 GPIENLFDHLADPVANNAWSYATNFVPG 264

[Close]
BLAST of CmoCh04G009860 vs. TAIR10
Match: AT3G27690.1 (AT3G27690.1 photosystem II light harvesting complex gene 2.3)

HSP 1 Score: 358.6 bits (919), Expect = 3.3e-99
Identity = 181/269 (67.29%), Postives = 205/269 (76.21%), Query Frame = 1 

Query: 7   STAILRPTPFLGQNRA-PSNNSLRDVVAMG-----TPKYTMVPTPFGNELWYGPDRVKYL 66
           +T+ ++ + F GQ    PSN+ LR + A         + T+  TP    +WYGPDR KYL
Sbjct: 2   ATSAIQHSSFAGQTTLKPSNDLLRKIGASNGGGRIIMRRTVKSTP--QSIWYGPDRPKYL 61

Query: 67  GPFSAQTPSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGAFGCITPEVL 126
           GPFS  TPSYL GE+PGDYGWDTAGLSADPE FAKNR LEVIH RWAMLGA GC  PE+L
Sbjct: 62  GPFSENTPSYLTGEYPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCTFPEIL 121

Query: 127 EKWLKVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRIN 186
            K   V F E VWFKAG+QIFSEGGLDYLGNPNL+HAQSILA+   QVVLMG +EG+RI 
Sbjct: 122 SK-NGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFIEGYRIG 181

Query: 187 GLDGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTG 246
           G   +GEG D LYPGG  FDPL LA+DP  F+ELKVKE+KNGRLAMFSMFGFFVQAIVTG
Sbjct: 182 G-GPLGEGLDPLYPGGA-FDPLNLAEDPEAFSELKVKELKNGRLAMFSMFGFFVQAIVTG 241

Query: 247 KGPLENLLDHLDNPVANNAWVYATKFAPG 269
           KGP+ENL DH+ +PVANNAW YAT F PG
Sbjct: 242 KGPIENLFDHIADPVANNAWAYATNFVPG 265

[Close]
BLAST of CmoCh04G009860 vs. TAIR10
Match: AT2G34420.1 (AT2G34420.1 photosystem II light harvesting complex gene B1B2)

HSP 1 Score: 349.0 bits (894), Expect = 2.6e-96
Identity = 178/271 (65.68%), Postives = 203/271 (74.91%), Query Frame = 1 

Query: 5   ATSTAILRPTPFLGQNRAPSNNSLRDVVAMGTPKYTMVPT------PFGNELWYGPDRVK 64
           A+ST  L    F G+   P+ + +     +G+ + TM  T      P G+  WYG DRVK
Sbjct: 2   ASSTMALSSPAFAGKAVKPAASDV-----LGSGRVTMRKTVAKPKGPSGSP-WYGSDRVK 61

Query: 65  YLGPFSAQTPSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGAFGCITPE 124
           YLGPFS + PSYL GEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLGA GC+ PE
Sbjct: 62  YLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPE 121

Query: 125 VLEKWLKVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFR 184
           +L +   V F E VWFKAG+QIFS+GGLDYLGNP+LVHAQSILA+   QV+LMG VEG+R
Sbjct: 122 LLAR-NGVKFGEAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYR 181

Query: 185 INGLDGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIV 244
           + G   +GE  D LYPGG  FDPLGLA DP  FAELKVKE+KNGRLAMFSMFGFFVQAIV
Sbjct: 182 VAGDGPLGEAEDLLYPGGS-FDPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFVQAIV 241

Query: 245 TGKGPLENLLDHLDNPVANNAWVYATKFAPG 269
           TGKGPLENL DHL +PV NNAW +AT F PG
Sbjct: 242 TGKGPLENLADHLADPVNNNAWAFATNFVPG 264

[Close]
BLAST of CmoCh04G009860 vs. NCBI nr
Match: gi|703119118|ref|XP_010101783.1| (Chlorophyll a-b binding protein 13 [Morus notabilis])

HSP 1 Score: 519.2 bits (1336), Expect = 4.2e-144
Identity = 248/269 (92.19%), Postives = 254/269 (94.42%), Query Frame = 1 

Query: 1   MSMAATSTAILRPTPFLGQNRAPSNNSLRDVVAMGTPKYTMVPTPFGNELWYGPDRVKYL 60
           M+  A+S+A+LRPTPFLGQNR  S+ SLRDVV MGT KYTM     GNELWYGPDRVKYL
Sbjct: 1   MAATASSSALLRPTPFLGQNRGQSSTSLRDVVPMGTGKYTM-----GNELWYGPDRVKYL 60

Query: 61  GPFSAQTPSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGAFGCITPEVL 120
           GPFSAQTPSYL GEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGA GCITPEVL
Sbjct: 61  GPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVL 120

Query: 121 EKWLKVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRIN 180
           EKW+KVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRIN
Sbjct: 121 EKWVKVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRIN 180

Query: 181 GLDGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGK 240
           GLDGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGK
Sbjct: 181 GLDGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGK 240

Query: 241 GPLENLLDHLDNPVANNAWVYATKFAPGS 270
           GPLENLLDHLDNPVANNAWVYATKF PGS
Sbjct: 241 GPLENLLDHLDNPVANNAWVYATKFVPGS 264

[Close]
BLAST of CmoCh04G009860 vs. NCBI nr
Match: gi|659102746|ref|XP_008452292.1| (PREDICTED: chlorophyll a-b binding protein 13, chloroplastic [Cucumis melo])

HSP 1 Score: 514.2 bits (1323), Expect = 1.3e-142
Identity = 246/269 (91.45%), Postives = 250/269 (92.94%), Query Frame = 1 

Query: 1   MSMAATSTAILRPTPFLGQNRAPSNNSLRDVVAMGTPKYTMVPTPFGNELWYGPDRVKYL 60
           M+  ATS  +LR TPFLGQ R    N LRD VAMGT KYTM     GN+LWYGPDRVKYL
Sbjct: 1   MASTATSATLLRATPFLGQTRGSPQNPLRDFVAMGTGKYTM-----GNDLWYGPDRVKYL 60

Query: 61  GPFSAQTPSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGAFGCITPEVL 120
           GPFSAQTPSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGA GCITPEVL
Sbjct: 61  GPFSAQTPSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVL 120

Query: 121 EKWLKVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRIN 180
           EKWLKVDFKEPVWFKAGAQIF+EGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRIN
Sbjct: 121 EKWLKVDFKEPVWFKAGAQIFTEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRIN 180

Query: 181 GLDGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGK 240
           GLDGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGK
Sbjct: 181 GLDGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGK 240

Query: 241 GPLENLLDHLDNPVANNAWVYATKFAPGS 270
           GPLENLLDHLDNPVANNAWVYATKFAPGS
Sbjct: 241 GPLENLLDHLDNPVANNAWVYATKFAPGS 264

[Close]
BLAST of CmoCh04G009860 vs. NCBI nr
Match: gi|657954166|ref|XP_008366442.1| (PREDICTED: chlorophyll a-b binding protein 13, chloroplastic [Malus domestica])

HSP 1 Score: 513.5 bits (1321), Expect = 2.3e-142
Identity = 243/269 (90.33%), Postives = 255/269 (94.80%), Query Frame = 1 

Query: 1   MSMAATSTAILRPTPFLGQNRAPSNNSLRDVVAMGTPKYTMVPTPFGNELWYGPDRVKYL 60
           M+ AA+S+ +LR TPFLGQ+R PS N+L+DVV MGT KYTM     GN+LWYGPDRVKYL
Sbjct: 1   MAAAASSSTLLRTTPFLGQSRGPSFNTLKDVVPMGTGKYTM-----GNDLWYGPDRVKYL 60

Query: 61  GPFSAQTPSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGAFGCITPEVL 120
           GPFSAQTPSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGA GCITPEVL
Sbjct: 61  GPFSAQTPSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVL 120

Query: 121 EKWLKVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRIN 180
           EKW++VDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQV+LMGLVEGFRIN
Sbjct: 121 EKWVRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVILMGLVEGFRIN 180

Query: 181 GLDGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGK 240
           GLDGVGEGN+LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGK
Sbjct: 181 GLDGVGEGNNLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGK 240

Query: 241 GPLENLLDHLDNPVANNAWVYATKFAPGS 270
           GPLENLLDHLDNPVANNAWVYATKF PGS
Sbjct: 241 GPLENLLDHLDNPVANNAWVYATKFVPGS 264

[Close]
BLAST of CmoCh04G009860 vs. NCBI nr
Match: gi|595864657|ref|XP_007211811.1| (hypothetical protein PRUPE_ppa009987mg [Prunus persica])

HSP 1 Score: 513.1 bits (1320), Expect = 3.0e-142
Identity = 243/269 (90.33%), Postives = 252/269 (93.68%), Query Frame = 1 

Query: 1   MSMAATSTAILRPTPFLGQNRAPSNNSLRDVVAMGTPKYTMVPTPFGNELWYGPDRVKYL 60
           M+  A+S+ +LRPTPFLGQ R PS N+LRDV  MGT KYTM     GNELWYGPDRVKYL
Sbjct: 6   MAATASSSTLLRPTPFLGQTRGPSFNTLRDVAPMGTGKYTM-----GNELWYGPDRVKYL 65

Query: 61  GPFSAQTPSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGAFGCITPEVL 120
           GPFSAQTPSYL GEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGA GCITPEVL
Sbjct: 66  GPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVL 125

Query: 121 EKWLKVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRIN 180
           EKW++VDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQV+LMGLVEGFRIN
Sbjct: 126 EKWVRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVILMGLVEGFRIN 185

Query: 181 GLDGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGK 240
           GLDGVGEGN+LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGK
Sbjct: 186 GLDGVGEGNNLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGK 245

Query: 241 GPLENLLDHLDNPVANNAWVYATKFAPGS 270
           GPLENLLDHLDNPVANNAWVYATKF PGS
Sbjct: 246 GPLENLLDHLDNPVANNAWVYATKFVPGS 269

[Close]
BLAST of CmoCh04G009860 vs. NCBI nr
Match: gi|694412553|ref|XP_009334588.1| (PREDICTED: chlorophyll a-b binding protein 13, chloroplastic [Pyrus x bretschneideri])

HSP 1 Score: 512.3 bits (1318), Expect = 5.1e-142
Identity = 243/269 (90.33%), Postives = 254/269 (94.42%), Query Frame = 1 

Query: 1   MSMAATSTAILRPTPFLGQNRAPSNNSLRDVVAMGTPKYTMVPTPFGNELWYGPDRVKYL 60
           M+ AA+S+ +LR TPFLGQ+R PS N+LRDVV MGT KYTM     GN+LWYGPDRVKYL
Sbjct: 1   MAAAASSSTLLRTTPFLGQSRGPSFNTLRDVVPMGTGKYTM-----GNDLWYGPDRVKYL 60

Query: 61  GPFSAQTPSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGAFGCITPEVL 120
           GPFSAQTPSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGA GCITPEVL
Sbjct: 61  GPFSAQTPSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVL 120

Query: 121 EKWLKVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRIN 180
           EKW++VDFKEPVWFKAGAQI SEGGLDYLGNPNLVHAQSILAVLGFQV+LMGLVEGFRIN
Sbjct: 121 EKWVRVDFKEPVWFKAGAQIISEGGLDYLGNPNLVHAQSILAVLGFQVILMGLVEGFRIN 180

Query: 181 GLDGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGK 240
           GLDGVGEGN+LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGK
Sbjct: 181 GLDGVGEGNNLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGK 240

Query: 241 GPLENLLDHLDNPVANNAWVYATKFAPGS 270
           GPLENLLDHLDNPVANNAWVYATKF PGS
Sbjct: 241 GPLENLLDHLDNPVANNAWVYATKFVPGS 264

The following BLAST results are available for this feature:
BLAST of CmoCh04G009860 vs. Swiss-Prot
Match NameE-valueIdentityDescription
CB3_ARATH5.7e-14187.69Chlorophyll a-b binding protein 3, chloroplastic OS=Arabidopsis thaliana GN=LHCB... [more]
CB23_SOLLC1.0e-13786.62Chlorophyll a-b binding protein 13, chloroplastic OS=Solanum lycopersicum GN=CAB... [more]
CB23_HORVU2.3e-13485.45Chlorophyll a-b binding protein of LHCII type III, chloroplastic OS=Hordeum vulg... [more]
CB23_ORYSI8.3e-10070.19Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. indica GN=... [more]
CB23_ORYSJ8.3e-10070.19Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. japonica G... [more]
BLAST of CmoCh04G009860 vs. TrEMBL
Match NameE-valueIdentityDescription
W9RGN8_9ROSA2.9e-14492.19Chlorophyll a-b binding protein, chloroplastic OS=Morus notabilis GN=L484_018739... [more]
M5X1T0_PRUPE2.1e-14290.33Chlorophyll a-b binding protein, chloroplastic OS=Prunus persica GN=PRUPE_ppa009... [more]
A0A0B2RQS6_GLYSO1.4e-14190.64Chlorophyll a-b binding protein, chloroplastic OS=Glycine soja GN=glysoja_001507... [more]
C6T868_SOYBN1.4e-14190.64Chlorophyll a-b binding protein, chloroplastic OS=Glycine max GN=GLYMA_13G282000... [more]
A0A0A0L6I8_CUCSA5.2e-14190.33Chlorophyll a-b binding protein, chloroplastic OS=Cucumis sativus GN=Csa_3G09968... [more]
BLAST of CmoCh04G009860 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G54270.13.2e-14287.69 light-harvesting chlorophyll B-binding protein 3[more]
AT2G05100.11.4e-10068.40 photosystem II light harvesting complex gene 2.1[more]
AT2G05070.11.1e-9967.54 photosystem II light harvesting complex gene 2.2[more]
AT3G27690.13.3e-9967.29 photosystem II light harvesting complex gene 2.3[more]
AT2G34420.12.6e-9665.68 photosystem II light harvesting complex gene B1B2[more]
BLAST of CmoCh04G009860 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|703119118|ref|XP_010101783.1|4.2e-14492.19Chlorophyll a-b binding protein 13 [Morus notabilis][more]
gi|659102746|ref|XP_008452292.1|1.3e-14291.45PREDICTED: chlorophyll a-b binding protein 13, chloroplastic [Cucumis melo][more]
gi|657954166|ref|XP_008366442.1|2.3e-14290.33PREDICTED: chlorophyll a-b binding protein 13, chloroplastic [Malus domestica][more]
gi|595864657|ref|XP_007211811.1|3.0e-14290.33hypothetical protein PRUPE_ppa009987mg [Prunus persica][more]
gi|694412553|ref|XP_009334588.1|5.1e-14290.33PREDICTED: chlorophyll a-b binding protein 13, chloroplastic [Pyrus x bretschnei... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001344Chloro_AB-bd_pln
IPR022796Chloroa_b-bind
IPR023329Chlorophyll_a/b-bd_dom_sf
Vocabulary: Biological Process
TermDefinition
GO:0009765photosynthesis, light harvesting
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009765 photosynthesis, light harvesting
biological_process GO:0018298 protein-chromophore linkage
biological_process GO:0009769 photosynthesis, light harvesting in photosystem II
biological_process GO:0010119 regulation of stomatal movement
biological_process GO:0009737 response to abscisic acid
biological_process GO:0009635 response to herbicide
biological_process GO:0009644 response to high light intensity
cellular_component GO:0009535 chloroplast thylakoid membrane
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0009522 photosystem I
cellular_component GO:0009523 photosystem II
cellular_component GO:0016020 membrane
molecular_function GO:0016168 chlorophyll binding
molecular_function GO:0046872 metal ion binding
molecular_function GO:0005198 structural molecule activity
molecular_function GO:0019904 protein domain specific binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh04G009860.1CmoCh04G009860.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001344Chlorophyll A-B binding protein, plantPANTHERPTHR21649CHLOROPHYLL A/B BINDING PROTEINcoord: 1..269
score: 4.6E
IPR022796Chlorophyll A-B binding proteinPFAMPF00504Chloroa_b-bindcoord: 68..235
score: 7.3
IPR023329Chlorophyll a/b binding protein domainGENE3DG3DSA:1.10.3460.10coord: 60..261
score: 4.9
IPR023329Chlorophyll a/b binding protein domainunknownSSF103511Chlorophyll a-b binding proteincoord: 50..266
score: 3.53
NoneNo IPR availablePANTHERPTHR21649:SF11SUBFAMILY NOT NAMEDcoord: 1..269
score: 4.6E