CmaCh04G009180 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh04G009180
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionLight-harvesting chlorophyll a/b binding protein of photosystem II
LocationCma_Chr04 : 4748020 .. 4749246 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CTGGGTCTTCCATTCTTCACCACTCATCTTCACCACTCATCTTCCCCATTTTCTCATAATATTCCCCCACTCGATTTCTCTCTTCTTCTCGCACCTTTCCCACAACTCTAACACACACCTCAACTACGATGTCGATGGCCGCCACCTCCACCGCCATCCTCCGCCCCACCCCTTTTCTCGGCCAAAGCAGAGCCTCTTCCCACAACTCCCTCAGAGATGTCGTCGCCATGGGAACTCCAAAATACACCATGGTCCCGACCCCTTTCGTTTTCTCTCTCCCTACCTTTGCTTCCTTTTGTTTTAGGGAGTGTTGAAATTGATGATGTTTTTTTTATTTTATTTTATTTTGGATAGGGAAATGAACTGTGGTATGGACCAGACAGAGTAAAGTACTTGGGGCCCTTTTCCGCTCAGACTCCCTCCTACCTGAATGGAGAGTTCCCCGGCGATTATGGATGGGATACTGCTGGGTTGTCCGCCGATCCCGAGGCCTTCGCCAAGAACAGAGCTCTTGAGGTAATTTCCATCCCCATCCTTGCTTAAGAATCAATCAAGGTATTAATTTGATGAATTCAAATTTTGATTTACATATGGTCGAACGGAATTGCAGGTAATCCACGGGAGGTGGGCGATGTTGGGAGCCTTCGGGTGCATAACACCAGAAGTGCTAGAAAAATGGTTGAAAGTGGACTTCAAGGAGCCAGTCTGGTTCAAGGCCGGAGCCCAGATCTTCTCAGAAGGGGGGCTCGACTACTTGGGGAACCCCAACCTGGTGCACGCCCAGAGCATCCTAGCCGTTTTGGGTTTCCAAGTGGTCCTAATGGGGCTGGTTGAAGGGTTCCGCATCAACGGGCTGGACGGCGTGGGCGAAGGCAACGACCTGTACCCAGGGGGTCAGTACTTCGACCCACTCGGACTGGCCGACGACCCCGTCACCTTCGCCGAGCTGAAGGTGAAGGAGATCAAGAACGGGCGGCTGGCCATGTTCTCCATGTTCGGGTTCTTTGTTCAGGCCATCGTTACTGGGAAAGGCCCCCTCGAGAACCTTCTCGACCATCTCGATAACCCTGTGGCCAACAATGCTTGGGTTTACGCCACCAAGTTTGCCCCTGGCTCATAATTAAGCGATGTGTGGTGGGTTCGTCGATTAGAAGGCTGTGGATGTGATTATTAGAAGGCTGTGGATGTGATTATTAGAAGGCTGTGGATGTGATTATTAGAAGGCTG

mRNA sequence

CTGGGTCTTCCATTCTTCACCACTCATCTTCACCACTCATCTTCCCCATTTTCTCATAATATTCCCCCACTCGATTTCTCTCTTCTTCTCGCACCTTTCCCACAACTCTAACACACACCTCAACTACGATGTCGATGGCCGCCACCTCCACCGCCATCCTCCGCCCCACCCCTTTTCTCGGCCAAAGCAGAGCCTCTTCCCACAACTCCCTCAGAGATGTCGTCGCCATGGGAACTCCAAAATACACCATGGGAAATGAACTGTGGTATGGACCAGACAGAGTAAAGTACTTGGGGCCCTTTTCCGCTCAGACTCCCTCCTACCTGAATGGAGAGTTCCCCGGCGATTATGGATGGGATACTGCTGGGTTGTCCGCCGATCCCGAGGCCTTCGCCAAGAACAGAGCTCTTGAGGTAATCCACGGGAGGTGGGCGATGTTGGGAGCCTTCGGGTGCATAACACCAGAAGTGCTAGAAAAATGGTTGAAAGTGGACTTCAAGGAGCCAGTCTGGTTCAAGGCCGGAGCCCAGATCTTCTCAGAAGGGGGGCTCGACTACTTGGGGAACCCCAACCTGGTGCACGCCCAGAGCATCCTAGCCGTTTTGGGTTTCCAAGTGGTCCTAATGGGGCTGGTTGAAGGGTTCCGCATCAACGGGCTGGACGGCGTGGGCGAAGGCAACGACCTGTACCCAGGGGGTCAGTACTTCGACCCACTCGGACTGGCCGACGACCCCGTCACCTTCGCCGAGCTGAAGGTGAAGGAGATCAAGAACGGGCGGCTGGCCATGTTCTCCATGTTCGGGTTCTTTGTTCAGGCCATCGTTACTGGGAAAGGCCCCCTCGAGAACCTTCTCGACCATCTCGATAACCCTGTGGCCAACAATGCTTGGGTTTACGCCACCAAGTTTGCCCCTGGCTCATAATTAAGCGATGTGTGGTGGGTTCGTCGATTAGAAGGCTGTGGATGTGATTATTAGAAGGCTGTGGATGTGATTATTAGAAGGCTGTGGATGTGATTATTAGAAGGCTG

Coding sequence (CDS)

ATGTCGATGGCCGCCACCTCCACCGCCATCCTCCGCCCCACCCCTTTTCTCGGCCAAAGCAGAGCCTCTTCCCACAACTCCCTCAGAGATGTCGTCGCCATGGGAACTCCAAAATACACCATGGGAAATGAACTGTGGTATGGACCAGACAGAGTAAAGTACTTGGGGCCCTTTTCCGCTCAGACTCCCTCCTACCTGAATGGAGAGTTCCCCGGCGATTATGGATGGGATACTGCTGGGTTGTCCGCCGATCCCGAGGCCTTCGCCAAGAACAGAGCTCTTGAGGTAATCCACGGGAGGTGGGCGATGTTGGGAGCCTTCGGGTGCATAACACCAGAAGTGCTAGAAAAATGGTTGAAAGTGGACTTCAAGGAGCCAGTCTGGTTCAAGGCCGGAGCCCAGATCTTCTCAGAAGGGGGGCTCGACTACTTGGGGAACCCCAACCTGGTGCACGCCCAGAGCATCCTAGCCGTTTTGGGTTTCCAAGTGGTCCTAATGGGGCTGGTTGAAGGGTTCCGCATCAACGGGCTGGACGGCGTGGGCGAAGGCAACGACCTGTACCCAGGGGGTCAGTACTTCGACCCACTCGGACTGGCCGACGACCCCGTCACCTTCGCCGAGCTGAAGGTGAAGGAGATCAAGAACGGGCGGCTGGCCATGTTCTCCATGTTCGGGTTCTTTGTTCAGGCCATCGTTACTGGGAAAGGCCCCCTCGAGAACCTTCTCGACCATCTCGATAACCCTGTGGCCAACAATGCTTGGGTTTACGCCACCAAGTTTGCCCCTGGCTCATAA

Protein sequence

MSMAATSTAILRPTPFLGQSRASSHNSLRDVVAMGTPKYTMGNELWYGPDRVKYLGPFSAQTPSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGAFGCITPEVLEKWLKVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLDGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLDNPVANNAWVYATKFAPGS
Homology
[Close]
BLAST of CmaCh04G009180 vs. Swiss-Prot
Match: CB3_ARATH (Chlorophyll a-b binding protein 3, chloroplastic OS=Arabidopsis thaliana GN=LHCB3 PE=1 SV=1)

HSP 1 Score: 510.4 bits (1313), Expect = 1.2e-143
Identity = 236/263 (89.73%), Postives = 253/263 (96.20%), Query Frame = 1 

Query: 2   SMAATSTAILRPTPFLGQSRASSHNSLRDVVAMGTPKYTMGNELWYGPDRVKYLGPFSAQ 61
           S   +S+++L PT FLGQ++ASS N LRDVV++G+PKYTMGN+LWYGPDRVKYLGPFS Q
Sbjct: 3   STFTSSSSVLTPTTFLGQTKASSFNPLRDVVSLGSPKYTMGNDLWYGPDRVKYLGPFSVQ 62

Query: 62  TPSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGAFGCITPEVLEKWLKV 121
           TPSYL GEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGAFGCITPEVL+KW++V
Sbjct: 63  TPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGAFGCITPEVLQKWVRV 122

Query: 122 DFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLDGVG 181
           DFKEPVWFKAG+QIFSEGGLDYLGNPNLVHAQSILAVLGFQV+LMGLVEGFRINGLDGVG
Sbjct: 123 DFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVILMGLVEGFRINGLDGVG 182

Query: 182 EGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL 241
           EGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL
Sbjct: 183 EGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL 242

Query: 242 LDHLDNPVANNAWVYATKFAPGS 265
           LDHLDNPVANNAW +ATKFAPG+
Sbjct: 243 LDHLDNPVANNAWAFATKFAPGA 265

[Close]
BLAST of CmaCh04G009180 vs. Swiss-Prot
Match: CB23_SOLLC (Chlorophyll a-b binding protein 13, chloroplastic OS=Solanum lycopersicum GN=CAB13 PE=1 SV=1)

HSP 1 Score: 496.5 bits (1277), Expect = 1.8e-139
Identity = 233/264 (88.26%), Postives = 249/264 (94.32%), Query Frame = 1 

Query: 1   MSMAATSTAILRPTPFLGQSRASSHNSLRDVVAMGTPKYTMGNELWYGPDRVKYLGPFSA 60
           M+  A+ST +++ TPFLGQ++ +  N LRDVVAMG+ ++TM N+LWYGPDRVKYLGPFSA
Sbjct: 4   MAATASSTTVVKATPFLGQTKNA--NPLRDVVAMGSARFTMSNDLWYGPDRVKYLGPFSA 63

Query: 61  QTPSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGAFGCITPEVLEKWLK 120
           QTPSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGA GCI PEVLEKW+K
Sbjct: 64  QTPSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCIFPEVLEKWVK 123

Query: 121 VDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLDGV 180
           VDFKEPVWFKAG+QIFS+GGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGL GV
Sbjct: 124 VDFKEPVWFKAGSQIFSDGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGV 183

Query: 181 GEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLEN 240
           GEGNDLYPGGQYFDPLGLADDP TFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLEN
Sbjct: 184 GEGNDLYPGGQYFDPLGLADDPTTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLEN 243

Query: 241 LLDHLDNPVANNAWVYATKFAPGS 265
           LLDHLDNPVANNAWVYATKF PG+
Sbjct: 244 LLDHLDNPVANNAWVYATKFVPGA 265

[Close]
BLAST of CmaCh04G009180 vs. Swiss-Prot
Match: CB23_HORVU (Chlorophyll a-b binding protein of LHCII type III, chloroplastic OS=Hordeum vulgare GN=LHBC PE=2 SV=1)

HSP 1 Score: 486.1 bits (1250), Expect = 2.4e-136
Identity = 229/263 (87.07%), Postives = 245/263 (93.16%), Query Frame = 1 

Query: 3   MAATSTAILRPTPFL-GQSRASSHNSLRDVVAMGTPKYTMGNELWYGPDRVKYLGPFSAQ 62
           MAA S A++  TPFL GQ RA+S + LRD+ A    + TMGN+LWYGPDRVKYLGPFSAQ
Sbjct: 6   MAAASRAVVAKTPFLSGQGRAASASPLRDIAAATNGRITMGNDLWYGPDRVKYLGPFSAQ 65

Query: 63  TPSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGAFGCITPEVLEKWLKV 122
           TPSYLNGEFPGDYGWDTAGLSADPEAFA+NRALEVIHGRWAMLGA GC+ PEVL+KW+ V
Sbjct: 66  TPSYLNGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCVFPEVLQKWVGV 125

Query: 123 DFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLDGVG 182
           +FKEPVWFKAG+QIFSEGGLDYLGNPNLVHAQSILAVLGFQV+LMGLVEGFRINGLDGVG
Sbjct: 126 EFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVLLMGLVEGFRINGLDGVG 185

Query: 183 EGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL 242
           EGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL
Sbjct: 186 EGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL 245

Query: 243 LDHLDNPVANNAWVYATKFAPGS 265
            DHLD+PVANNAWV+ATKFAPGS
Sbjct: 246 FDHLDDPVANNAWVFATKFAPGS 268

[Close]
BLAST of CmaCh04G009180 vs. Swiss-Prot
Match: CB24_SOLLC (Chlorophyll a-b binding protein 4, chloroplastic OS=Solanum lycopersicum GN=CAB4 PE=2 SV=1)

HSP 1 Score: 364.0 bits (933), Expect = 1.4e-99
Identity = 183/266 (68.80%), Postives = 205/266 (77.07%), Query Frame = 1 

Query: 7   STAILRPTPFLGQSRASSHNS-LRDVVAMGTPKYTMGN-------ELWYGPDRVKYLGPF 66
           +T  ++ + F+GQ+   S N  +R V   G  + TM          +WYG DR KYLGPF
Sbjct: 2   ATCAIQQSAFVGQAVGKSQNEFIRKVGNFGEGRITMRRTVKSAPQSIWYGEDRPKYLGPF 61

Query: 67  SAQTPSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGAFGCITPEVLEKW 126
           S QTPSYL GEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLGA GC+ PE+L K 
Sbjct: 62  SEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSK- 121

Query: 127 LKVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLD 186
             V F E VWFKAG+QIFSEGGLDYLGNPNLVHAQSILA+   QVVLMG VEG+R+ G  
Sbjct: 122 NGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAIWACQVVLMGFVEGYRVGG-G 181

Query: 187 GVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP 246
            +GEG D +YPGG  FDPLGLADDP  FAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP
Sbjct: 182 PLGEGLDKIYPGGA-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP 241

Query: 247 LENLLDHLDNPVANNAWVYATKFAPG 264
           +ENL DH+++PVANNAW YAT F PG
Sbjct: 242 IENLSDHINDPVANNAWAYATNFVPG 264

[Close]
BLAST of CmaCh04G009180 vs. Swiss-Prot
Match: CB23_TOBAC (Chlorophyll a-b binding protein 36, chloroplastic OS=Nicotiana tabacum GN=CAB36 PE=3 SV=1)

HSP 1 Score: 362.5 bits (929), Expect = 4.0e-99
Identity = 182/266 (68.42%), Postives = 204/266 (76.69%), Query Frame = 1 

Query: 7   STAILRPTPFLGQSRASSHNSL-RDVVAMGTPKYTMGN-------ELWYGPDRVKYLGPF 66
           +T+ +  + F GQ+   S N L R + +    + TM          +WYG DR KYLGPF
Sbjct: 2   ATSAIEQSAFAGQTALKSQNELVRKIGSFNGGRATMRRTVKSAPQSIWYGEDRPKYLGPF 61

Query: 67  SAQTPSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGAFGCITPEVLEKW 126
           S QTPSYL GEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLGA GC+ PE+L K 
Sbjct: 62  SEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSK- 121

Query: 127 LKVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLD 186
             V F E VWFKAG+QIFSEGGLDYLGNPNL+HAQSILAV   QVVLMGL+EG+R+ G  
Sbjct: 122 NGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAVWASQVVLMGLIEGYRVGG-G 181

Query: 187 GVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP 246
            +GEG D +YPGG  FDPLGLADDP  FAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP
Sbjct: 182 PLGEGLDKIYPGGA-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP 241

Query: 247 LENLLDHLDNPVANNAWVYATKFAPG 264
           +ENL DH+ +PVANNAW YAT F PG
Sbjct: 242 IENLFDHVADPVANNAWAYATNFVPG 264

[Close]
BLAST of CmaCh04G009180 vs. TrEMBL
Match: W9RGN8_9ROSA (Chlorophyll a-b binding protein, chloroplastic OS=Morus notabilis GN=L484_018739 PE=3 SV=1)

HSP 1 Score: 522.3 bits (1344), Expect = 3.4e-145
Identity = 247/264 (93.56%), Postives = 253/264 (95.83%), Query Frame = 1 

Query: 1   MSMAATSTAILRPTPFLGQSRASSHNSLRDVVAMGTPKYTMGNELWYGPDRVKYLGPFSA 60
           M+  A+S+A+LRPTPFLGQ+R  S  SLRDVV MGT KYTMGNELWYGPDRVKYLGPFSA
Sbjct: 1   MAATASSSALLRPTPFLGQNRGQSSTSLRDVVPMGTGKYTMGNELWYGPDRVKYLGPFSA 60

Query: 61  QTPSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGAFGCITPEVLEKWLK 120
           QTPSYL GEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGA GCITPEVLEKW+K
Sbjct: 61  QTPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLEKWVK 120

Query: 121 VDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLDGV 180
           VDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLDGV
Sbjct: 121 VDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLDGV 180

Query: 181 GEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLEN 240
           GEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLEN
Sbjct: 181 GEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLEN 240

Query: 241 LLDHLDNPVANNAWVYATKFAPGS 265
           LLDHLDNPVANNAWVYATKF PGS
Sbjct: 241 LLDHLDNPVANNAWVYATKFVPGS 264

[Close]
BLAST of CmaCh04G009180 vs. TrEMBL
Match: A0A0A0L6I8_CUCSA (Chlorophyll a-b binding protein, chloroplastic OS=Cucumis sativus GN=Csa_3G099680 PE=3 SV=1)

HSP 1 Score: 516.9 bits (1330), Expect = 1.4e-143
Identity = 244/264 (92.42%), Postives = 252/264 (95.45%), Query Frame = 1 

Query: 1   MSMAATSTAILRPTPFLGQSRASSHNSLRDVVAMGTPKYTMGNELWYGPDRVKYLGPFSA 60
           M+  A +  +LR TPFLGQ+RAS  N LRDVVAMGT KYTM N+LWYGPDRVKYLGPFSA
Sbjct: 1   MAATAATATLLRATPFLGQARASPQNPLRDVVAMGTGKYTMSNDLWYGPDRVKYLGPFSA 60

Query: 61  QTPSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGAFGCITPEVLEKWLK 120
           QTPSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGA GCITPEVLEKWLK
Sbjct: 61  QTPSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLEKWLK 120

Query: 121 VDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLDGV 180
           VDFKEPVWFKAG+QIF+EGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLDGV
Sbjct: 121 VDFKEPVWFKAGSQIFTEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLDGV 180

Query: 181 GEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLEN 240
           GEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLEN
Sbjct: 181 GEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLEN 240

Query: 241 LLDHLDNPVANNAWVYATKFAPGS 265
           LLDHLD+PVANNAWVYATKFAPGS
Sbjct: 241 LLDHLDDPVANNAWVYATKFAPGS 264

[Close]
BLAST of CmaCh04G009180 vs. TrEMBL
Match: C6T868_SOYBN (Chlorophyll a-b binding protein, chloroplastic OS=Glycine max GN=GLYMA_13G282000 PE=2 SV=1)

HSP 1 Score: 516.9 bits (1330), Expect = 1.4e-143
Identity = 242/262 (92.37%), Postives = 253/262 (96.56%), Query Frame = 1 

Query: 3   MAATSTAILRPTPFLGQSRASSHNSLRDVVAMGTPKYTMGNELWYGPDRVKYLGPFSAQT 62
           MAATS+  L+ TPFLGQ + ++ N+LRDVV+MGT KYTMGN+LWYGPDRVKYLGPFSAQT
Sbjct: 6   MAATSSGTLKATPFLGQGKGANANALRDVVSMGTGKYTMGNDLWYGPDRVKYLGPFSAQT 65

Query: 63  PSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGAFGCITPEVLEKWLKVD 122
           PSYL GEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGA GCITPEVLEKWL+VD
Sbjct: 66  PSYLKGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLEKWLRVD 125

Query: 123 FKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLDGVGE 182
           FKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQV+LMGLVEG+RINGLDGVGE
Sbjct: 126 FKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVILMGLVEGYRINGLDGVGE 185

Query: 183 GNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLL 242
           GNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLL
Sbjct: 186 GNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLL 245

Query: 243 DHLDNPVANNAWVYATKFAPGS 265
           DHLDNPVANNAWVYATKFAPGS
Sbjct: 246 DHLDNPVANNAWVYATKFAPGS 267

[Close]
BLAST of CmaCh04G009180 vs. TrEMBL
Match: A0A0B2RQS6_GLYSO (Chlorophyll a-b binding protein, chloroplastic OS=Glycine soja GN=glysoja_001507 PE=3 SV=1)

HSP 1 Score: 516.9 bits (1330), Expect = 1.4e-143
Identity = 242/262 (92.37%), Postives = 253/262 (96.56%), Query Frame = 1 

Query: 3   MAATSTAILRPTPFLGQSRASSHNSLRDVVAMGTPKYTMGNELWYGPDRVKYLGPFSAQT 62
           MAATS+  L+ TPFLGQ + ++ N+LRDVV+MGT KYTMGN+LWYGPDRVKYLGPFSAQT
Sbjct: 6   MAATSSGTLKATPFLGQGKGANANALRDVVSMGTGKYTMGNDLWYGPDRVKYLGPFSAQT 65

Query: 63  PSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGAFGCITPEVLEKWLKVD 122
           PSYL GEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGA GCITPEVLEKWL+VD
Sbjct: 66  PSYLKGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLEKWLRVD 125

Query: 123 FKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLDGVGE 182
           FKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQV+LMGLVEG+RINGLDGVGE
Sbjct: 126 FKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVILMGLVEGYRINGLDGVGE 185

Query: 183 GNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLL 242
           GNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLL
Sbjct: 186 GNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLL 245

Query: 243 DHLDNPVANNAWVYATKFAPGS 265
           DHLDNPVANNAWVYATKFAPGS
Sbjct: 246 DHLDNPVANNAWVYATKFAPGS 267

[Close]
BLAST of CmaCh04G009180 vs. TrEMBL
Match: M5X1T0_PRUPE (Chlorophyll a-b binding protein, chloroplastic OS=Prunus persica GN=PRUPE_ppa009987mg PE=3 SV=1)

HSP 1 Score: 516.5 bits (1329), Expect = 1.9e-143
Identity = 242/264 (91.67%), Postives = 252/264 (95.45%), Query Frame = 1 

Query: 1   MSMAATSTAILRPTPFLGQSRASSHNSLRDVVAMGTPKYTMGNELWYGPDRVKYLGPFSA 60
           M+  A+S+ +LRPTPFLGQ+R  S N+LRDV  MGT KYTMGNELWYGPDRVKYLGPFSA
Sbjct: 6   MAATASSSTLLRPTPFLGQTRGPSFNTLRDVAPMGTGKYTMGNELWYGPDRVKYLGPFSA 65

Query: 61  QTPSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGAFGCITPEVLEKWLK 120
           QTPSYL GEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGA GCITPEVLEKW++
Sbjct: 66  QTPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLEKWVR 125

Query: 121 VDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLDGV 180
           VDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQV+LMGLVEGFRINGLDGV
Sbjct: 126 VDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVILMGLVEGFRINGLDGV 185

Query: 181 GEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLEN 240
           GEGN+LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLEN
Sbjct: 186 GEGNNLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLEN 245

Query: 241 LLDHLDNPVANNAWVYATKFAPGS 265
           LLDHLDNPVANNAWVYATKF PGS
Sbjct: 246 LLDHLDNPVANNAWVYATKFVPGS 269

[Close]
BLAST of CmaCh04G009180 vs. TAIR10
Match: AT5G54270.1 (AT5G54270.1 light-harvesting chlorophyll B-binding protein 3)

HSP 1 Score: 510.4 bits (1313), Expect = 6.7e-145
Identity = 236/263 (89.73%), Postives = 253/263 (96.20%), Query Frame = 1 

Query: 2   SMAATSTAILRPTPFLGQSRASSHNSLRDVVAMGTPKYTMGNELWYGPDRVKYLGPFSAQ 61
           S   +S+++L PT FLGQ++ASS N LRDVV++G+PKYTMGN+LWYGPDRVKYLGPFS Q
Sbjct: 3   STFTSSSSVLTPTTFLGQTKASSFNPLRDVVSLGSPKYTMGNDLWYGPDRVKYLGPFSVQ 62

Query: 62  TPSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGAFGCITPEVLEKWLKV 121
           TPSYL GEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGAFGCITPEVL+KW++V
Sbjct: 63  TPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGAFGCITPEVLQKWVRV 122

Query: 122 DFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLDGVG 181
           DFKEPVWFKAG+QIFSEGGLDYLGNPNLVHAQSILAVLGFQV+LMGLVEGFRINGLDGVG
Sbjct: 123 DFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVILMGLVEGFRINGLDGVG 182

Query: 182 EGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL 241
           EGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL
Sbjct: 183 EGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL 242

Query: 242 LDHLDNPVANNAWVYATKFAPGS 265
           LDHLDNPVANNAW +ATKFAPG+
Sbjct: 243 LDHLDNPVANNAWAFATKFAPGA 265

[Close]
BLAST of CmaCh04G009180 vs. TAIR10
Match: AT2G05100.1 (AT2G05100.1 photosystem II light harvesting complex gene 2.1)

HSP 1 Score: 358.2 bits (918), Expect = 4.3e-99
Identity = 180/267 (67.42%), Postives = 202/267 (75.66%), Query Frame = 1 

Query: 7   STAILRPTPFLGQSRASSHNSL-RDVVAMGTPKYTMGN-------ELWYGPDRVKYLGPF 66
           +T+ ++ + F GQ+     N L R V   G  + TM          +WYGPDR KYLGPF
Sbjct: 2   ATSAIQQSSFAGQTALKPSNELLRKVGVSGGGRVTMRRTVKSTPQSIWYGPDRPKYLGPF 61

Query: 67  SAQTPSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGAFGCITPEVLEKW 126
           S  TPSYL GE+PGDYGWDTAGLSADPE FAKNR LEVIH RWAMLGA GC  PE+L K 
Sbjct: 62  SENTPSYLTGEYPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCTFPEILSK- 121

Query: 127 LKVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLD 186
             V F E VWFKAG+QIFSEGGLDYLGNPNL+HAQSILA+   QVVLMG +EG+RI G  
Sbjct: 122 NGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWAVQVVLMGFIEGYRIGG-G 181

Query: 187 GVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP 246
            +GEG D LYPGG  FDPL LA+DP  F+ELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP
Sbjct: 182 PLGEGLDPLYPGGA-FDPLNLAEDPEAFSELKVKELKNGRLAMFSMFGFFVQAIVTGKGP 241

Query: 247 LENLLDHLDNPVANNAWVYATKFAPGS 265
           +ENL DHL +PVANNAW YAT F PG+
Sbjct: 242 IENLFDHLADPVANNAWSYATNFVPGN 265

[Close]
BLAST of CmaCh04G009180 vs. TAIR10
Match: AT2G05070.1 (AT2G05070.1 photosystem II light harvesting complex gene 2.2)

HSP 1 Score: 355.9 bits (912), Expect = 2.1e-98
Identity = 178/266 (66.92%), Postives = 203/266 (76.32%), Query Frame = 1 

Query: 7   STAILRPTPFLGQSRAS-SHNSLRDVVAMGTPKYTMGN-------ELWYGPDRVKYLGPF 66
           +T+ ++ + F GQ+    S + ++ V  +G  + TM          +WYGPDR KYLGPF
Sbjct: 2   ATSAIQQSSFAGQTALKPSSDLIQKVGVLGGGRVTMRRTVKSTPQSIWYGPDRPKYLGPF 61

Query: 67  SAQTPSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGAFGCITPEVLEKW 126
           S  TPSYL GE+PGDYGWDTAGLSADPE FAKNR LEVIH RWAMLGA GC  PE+L K 
Sbjct: 62  SENTPSYLTGEYPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCTFPEILSK- 121

Query: 127 LKVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLD 186
             V F E VWFKAG+QIFSEGGLDYLGNPNL+HAQSILA+   QVVLMG +EG+RI G  
Sbjct: 122 NGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWAVQVVLMGFIEGYRIGG-G 181

Query: 187 GVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP 246
            +GEG D LYPGG  FDPL LA+DP  F+ELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP
Sbjct: 182 PLGEGLDPLYPGGA-FDPLNLAEDPEAFSELKVKELKNGRLAMFSMFGFFVQAIVTGKGP 241

Query: 247 LENLLDHLDNPVANNAWVYATKFAPG 264
           +ENL DHL +PVANNAW YAT F PG
Sbjct: 242 IENLFDHLADPVANNAWSYATNFVPG 264

[Close]
BLAST of CmaCh04G009180 vs. TAIR10
Match: AT3G27690.1 (AT3G27690.1 photosystem II light harvesting complex gene 2.3)

HSP 1 Score: 352.8 bits (904), Expect = 1.8e-97
Identity = 177/268 (66.04%), Postives = 200/268 (74.63%), Query Frame = 1 

Query: 7   STAILRPTPFLGQSRASSHNSLRD----------VVAMGTPKYTMGNELWYGPDRVKYLG 66
           +T+ ++ + F GQ+     N L            ++   T K T    +WYGPDR KYLG
Sbjct: 2   ATSAIQHSSFAGQTTLKPSNDLLRKIGASNGGGRIIMRRTVKSTP-QSIWYGPDRPKYLG 61

Query: 67  PFSAQTPSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGAFGCITPEVLE 126
           PFS  TPSYL GE+PGDYGWDTAGLSADPE FAKNR LEVIH RWAMLGA GC  PE+L 
Sbjct: 62  PFSENTPSYLTGEYPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCTFPEILS 121

Query: 127 KWLKVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRING 186
           K   V F E VWFKAG+QIFSEGGLDYLGNPNL+HAQSILA+   QVVLMG +EG+RI G
Sbjct: 122 K-NGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFIEGYRIGG 181

Query: 187 LDGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGK 246
              +GEG D LYPGG  FDPL LA+DP  F+ELKVKE+KNGRLAMFSMFGFFVQAIVTGK
Sbjct: 182 -GPLGEGLDPLYPGGA-FDPLNLAEDPEAFSELKVKELKNGRLAMFSMFGFFVQAIVTGK 241

Query: 247 GPLENLLDHLDNPVANNAWVYATKFAPG 264
           GP+ENL DH+ +PVANNAW YAT F PG
Sbjct: 242 GPIENLFDHIADPVANNAWAYATNFVPG 265

[Close]
BLAST of CmaCh04G009180 vs. TAIR10
Match: AT1G29920.1 (AT1G29920.1 chlorophyll A/B-binding protein 2)

HSP 1 Score: 349.0 bits (894), Expect = 2.6e-96
Identity = 177/271 (65.31%), Postives = 203/271 (74.91%), Query Frame = 1 

Query: 3   MAATSTAILRP---------TPFLGQSRASSHNSLRDVVAMGTPKYTMGNELWYGPDRVK 62
           MAA++ A+  P         +P   +   S   ++R  VA   PK   G+  WYG DRVK
Sbjct: 1   MAASTMALSSPAFAGKAVNLSPAASEVLGSGRVTMRKTVAK--PKGPSGSP-WYGSDRVK 60

Query: 63  YLGPFSAQTPSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGAFGCITPE 122
           YLGPFS ++PSYL GEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLGA GC+ PE
Sbjct: 61  YLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPE 120

Query: 123 VLEKWLKVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFR 182
           +L +   V F E VWFKAG+QIFS+GGLDYLGNP+LVHAQSILA+   QV+LMG VEG+R
Sbjct: 121 LLAR-NGVKFGEAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYR 180

Query: 183 INGLDGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIV 242
           + G   +GE  D LYPGG  FDPLGLA DP  FAELKVKE+KNGRLAMFSMFGFFVQAIV
Sbjct: 181 VAGNGPLGEAEDLLYPGGS-FDPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFVQAIV 240

Query: 243 TGKGPLENLLDHLDNPVANNAWVYATKFAPG 264
           TGKGP+ENL DHL +PV NNAW +AT F PG
Sbjct: 241 TGKGPIENLADHLADPVNNNAWAFATNFVPG 266

[Close]
BLAST of CmaCh04G009180 vs. NCBI nr
Match: gi|703119118|ref|XP_010101783.1| (Chlorophyll a-b binding protein 13 [Morus notabilis])

HSP 1 Score: 522.3 bits (1344), Expect = 4.9e-145
Identity = 247/264 (93.56%), Postives = 253/264 (95.83%), Query Frame = 1 

Query: 1   MSMAATSTAILRPTPFLGQSRASSHNSLRDVVAMGTPKYTMGNELWYGPDRVKYLGPFSA 60
           M+  A+S+A+LRPTPFLGQ+R  S  SLRDVV MGT KYTMGNELWYGPDRVKYLGPFSA
Sbjct: 1   MAATASSSALLRPTPFLGQNRGQSSTSLRDVVPMGTGKYTMGNELWYGPDRVKYLGPFSA 60

Query: 61  QTPSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGAFGCITPEVLEKWLK 120
           QTPSYL GEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGA GCITPEVLEKW+K
Sbjct: 61  QTPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLEKWVK 120

Query: 121 VDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLDGV 180
           VDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLDGV
Sbjct: 121 VDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLDGV 180

Query: 181 GEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLEN 240
           GEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLEN
Sbjct: 181 GEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLEN 240

Query: 241 LLDHLDNPVANNAWVYATKFAPGS 265
           LLDHLDNPVANNAWVYATKF PGS
Sbjct: 241 LLDHLDNPVANNAWVYATKFVPGS 264

[Close]
BLAST of CmaCh04G009180 vs. NCBI nr
Match: gi|659102746|ref|XP_008452292.1| (PREDICTED: chlorophyll a-b binding protein 13, chloroplastic [Cucumis melo])

HSP 1 Score: 521.9 bits (1343), Expect = 6.4e-145
Identity = 247/264 (93.56%), Postives = 252/264 (95.45%), Query Frame = 1 

Query: 1   MSMAATSTAILRPTPFLGQSRASSHNSLRDVVAMGTPKYTMGNELWYGPDRVKYLGPFSA 60
           M+  ATS  +LR TPFLGQ+R S  N LRD VAMGT KYTMGN+LWYGPDRVKYLGPFSA
Sbjct: 1   MASTATSATLLRATPFLGQTRGSPQNPLRDFVAMGTGKYTMGNDLWYGPDRVKYLGPFSA 60

Query: 61  QTPSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGAFGCITPEVLEKWLK 120
           QTPSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGA GCITPEVLEKWLK
Sbjct: 61  QTPSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLEKWLK 120

Query: 121 VDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLDGV 180
           VDFKEPVWFKAGAQIF+EGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLDGV
Sbjct: 121 VDFKEPVWFKAGAQIFTEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLDGV 180

Query: 181 GEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLEN 240
           GEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLEN
Sbjct: 181 GEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLEN 240

Query: 241 LLDHLDNPVANNAWVYATKFAPGS 265
           LLDHLDNPVANNAWVYATKFAPGS
Sbjct: 241 LLDHLDNPVANNAWVYATKFAPGS 264

[Close]
BLAST of CmaCh04G009180 vs. NCBI nr
Match: gi|657954166|ref|XP_008366442.1| (PREDICTED: chlorophyll a-b binding protein 13, chloroplastic [Malus domestica])

HSP 1 Score: 517.7 bits (1332), Expect = 1.2e-143
Identity = 243/264 (92.05%), Postives = 254/264 (96.21%), Query Frame = 1 

Query: 1   MSMAATSTAILRPTPFLGQSRASSHNSLRDVVAMGTPKYTMGNELWYGPDRVKYLGPFSA 60
           M+ AA+S+ +LR TPFLGQSR  S N+L+DVV MGT KYTMGN+LWYGPDRVKYLGPFSA
Sbjct: 1   MAAAASSSTLLRTTPFLGQSRGPSFNTLKDVVPMGTGKYTMGNDLWYGPDRVKYLGPFSA 60

Query: 61  QTPSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGAFGCITPEVLEKWLK 120
           QTPSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGA GCITPEVLEKW++
Sbjct: 61  QTPSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLEKWVR 120

Query: 121 VDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLDGV 180
           VDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQV+LMGLVEGFRINGLDGV
Sbjct: 121 VDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVILMGLVEGFRINGLDGV 180

Query: 181 GEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLEN 240
           GEGN+LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLEN
Sbjct: 181 GEGNNLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLEN 240

Query: 241 LLDHLDNPVANNAWVYATKFAPGS 265
           LLDHLDNPVANNAWVYATKF PGS
Sbjct: 241 LLDHLDNPVANNAWVYATKFVPGS 264

[Close]
BLAST of CmaCh04G009180 vs. NCBI nr
Match: gi|359806176|ref|NP_001241200.1| (uncharacterized protein LOC100790960 [Glycine max])

HSP 1 Score: 516.9 bits (1330), Expect = 2.0e-143
Identity = 242/262 (92.37%), Postives = 253/262 (96.56%), Query Frame = 1 

Query: 3   MAATSTAILRPTPFLGQSRASSHNSLRDVVAMGTPKYTMGNELWYGPDRVKYLGPFSAQT 62
           MAATS+  L+ TPFLGQ + ++ N+LRDVV+MGT KYTMGN+LWYGPDRVKYLGPFSAQT
Sbjct: 6   MAATSSGTLKATPFLGQGKGANANALRDVVSMGTGKYTMGNDLWYGPDRVKYLGPFSAQT 65

Query: 63  PSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGAFGCITPEVLEKWLKVD 122
           PSYL GEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGA GCITPEVLEKWL+VD
Sbjct: 66  PSYLKGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLEKWLRVD 125

Query: 123 FKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLDGVGE 182
           FKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQV+LMGLVEG+RINGLDGVGE
Sbjct: 126 FKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVILMGLVEGYRINGLDGVGE 185

Query: 183 GNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLL 242
           GNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLL
Sbjct: 186 GNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLL 245

Query: 243 DHLDNPVANNAWVYATKFAPGS 265
           DHLDNPVANNAWVYATKFAPGS
Sbjct: 246 DHLDNPVANNAWVYATKFAPGS 267

[Close]
BLAST of CmaCh04G009180 vs. NCBI nr
Match: gi|449463148|ref|XP_004149296.1| (PREDICTED: chlorophyll a-b binding protein 13, chloroplastic [Cucumis sativus])

HSP 1 Score: 516.9 bits (1330), Expect = 2.0e-143
Identity = 244/264 (92.42%), Postives = 252/264 (95.45%), Query Frame = 1 

Query: 1   MSMAATSTAILRPTPFLGQSRASSHNSLRDVVAMGTPKYTMGNELWYGPDRVKYLGPFSA 60
           M+  A +  +LR TPFLGQ+RAS  N LRDVVAMGT KYTM N+LWYGPDRVKYLGPFSA
Sbjct: 1   MAATAATATLLRATPFLGQARASPQNPLRDVVAMGTGKYTMSNDLWYGPDRVKYLGPFSA 60

Query: 61  QTPSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGAFGCITPEVLEKWLK 120
           QTPSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGA GCITPEVLEKWLK
Sbjct: 61  QTPSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLEKWLK 120

Query: 121 VDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLDGV 180
           VDFKEPVWFKAG+QIF+EGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLDGV
Sbjct: 121 VDFKEPVWFKAGSQIFTEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLDGV 180

Query: 181 GEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLEN 240
           GEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLEN
Sbjct: 181 GEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLEN 240

Query: 241 LLDHLDNPVANNAWVYATKFAPGS 265
           LLDHLD+PVANNAWVYATKFAPGS
Sbjct: 241 LLDHLDDPVANNAWVYATKFAPGS 264

The following BLAST results are available for this feature:
BLAST of CmaCh04G009180 vs. Swiss-Prot
Match NameE-valueIdentityDescription
CB3_ARATH1.2e-14389.73Chlorophyll a-b binding protein 3, chloroplastic OS=Arabidopsis thaliana GN=LHCB... [more]
CB23_SOLLC1.8e-13988.26Chlorophyll a-b binding protein 13, chloroplastic OS=Solanum lycopersicum GN=CAB... [more]
CB23_HORVU2.4e-13687.07Chlorophyll a-b binding protein of LHCII type III, chloroplastic OS=Hordeum vulg... [more]
CB24_SOLLC1.4e-9968.80Chlorophyll a-b binding protein 4, chloroplastic OS=Solanum lycopersicum GN=CAB4... [more]
CB23_TOBAC4.0e-9968.42Chlorophyll a-b binding protein 36, chloroplastic OS=Nicotiana tabacum GN=CAB36 ... [more]
BLAST of CmaCh04G009180 vs. TrEMBL
Match NameE-valueIdentityDescription
W9RGN8_9ROSA3.4e-14593.56Chlorophyll a-b binding protein, chloroplastic OS=Morus notabilis GN=L484_018739... [more]
A0A0A0L6I8_CUCSA1.4e-14392.42Chlorophyll a-b binding protein, chloroplastic OS=Cucumis sativus GN=Csa_3G09968... [more]
C6T868_SOYBN1.4e-14392.37Chlorophyll a-b binding protein, chloroplastic OS=Glycine max GN=GLYMA_13G282000... [more]
A0A0B2RQS6_GLYSO1.4e-14392.37Chlorophyll a-b binding protein, chloroplastic OS=Glycine soja GN=glysoja_001507... [more]
M5X1T0_PRUPE1.9e-14391.67Chlorophyll a-b binding protein, chloroplastic OS=Prunus persica GN=PRUPE_ppa009... [more]
BLAST of CmaCh04G009180 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G54270.16.7e-14589.73 light-harvesting chlorophyll B-binding protein 3[more]
AT2G05100.14.3e-9967.42 photosystem II light harvesting complex gene 2.1[more]
AT2G05070.12.1e-9866.92 photosystem II light harvesting complex gene 2.2[more]
AT3G27690.11.8e-9766.04 photosystem II light harvesting complex gene 2.3[more]
AT1G29920.12.6e-9665.31 chlorophyll A/B-binding protein 2[more]
BLAST of CmaCh04G009180 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|703119118|ref|XP_010101783.1|4.9e-14593.56Chlorophyll a-b binding protein 13 [Morus notabilis][more]
gi|659102746|ref|XP_008452292.1|6.4e-14593.56PREDICTED: chlorophyll a-b binding protein 13, chloroplastic [Cucumis melo][more]
gi|657954166|ref|XP_008366442.1|1.2e-14392.05PREDICTED: chlorophyll a-b binding protein 13, chloroplastic [Malus domestica][more]
gi|359806176|ref|NP_001241200.1|2.0e-14392.37uncharacterized protein LOC100790960 [Glycine max][more]
gi|449463148|ref|XP_004149296.1|2.0e-14392.42PREDICTED: chlorophyll a-b binding protein 13, chloroplastic [Cucumis sativus][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001344Chloro_AB-bd_pln
IPR022796Chloroa_b-bind
IPR023329Chlorophyll_a/b-bd_dom_sf
Vocabulary: Biological Process
TermDefinition
GO:0009765photosynthesis, light harvesting
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009765 photosynthesis, light harvesting
biological_process GO:0018298 protein-chromophore linkage
biological_process GO:0009769 photosynthesis, light harvesting in photosystem II
biological_process GO:0010119 regulation of stomatal movement
biological_process GO:0009737 response to abscisic acid
biological_process GO:0009635 response to herbicide
biological_process GO:0009644 response to high light intensity
cellular_component GO:0009535 chloroplast thylakoid membrane
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0009522 photosystem I
cellular_component GO:0009523 photosystem II
cellular_component GO:0016020 membrane
molecular_function GO:0016168 chlorophyll binding
molecular_function GO:0046872 metal ion binding
molecular_function GO:0005198 structural molecule activity
molecular_function GO:0019904 protein domain specific binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh04G009180.1CmaCh04G009180.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001344Chlorophyll A-B binding protein, plantPANTHERPTHR21649CHLOROPHYLL A/B BINDING PROTEINcoord: 1..264
score: 5.2E
IPR022796Chlorophyll A-B binding proteinPFAMPF00504Chloroa_b-bindcoord: 63..230
score: 6.9
IPR023329Chlorophyll a/b binding protein domainGENE3DG3DSA:1.10.3460.10coord: 55..256
score: 4.6
IPR023329Chlorophyll a/b binding protein domainunknownSSF103511Chlorophyll a-b binding proteincoord: 45..261
score: 3.4
NoneNo IPR availablePANTHERPTHR21649:SF11SUBFAMILY NOT NAMEDcoord: 1..264
score: 5.2E