CSPI03G05850 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI03G05850
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Chlorophyll a-b binding protein, chloroplastic
Location	Chr3 : 4977290 .. 4979108 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAGAAAAGTAGGGTATAGATAAAATGTGGATAGAAAGAGATGAGTTGTAGATGCAAAAAAATCTTTAGAAACAATATGATTGGCTAACTAAACCCTCTCACTACCCCACAAAATTTCTCAAAATCTTTCATTCTTCACCACTCATCTTCCTCATTTCCTCATAATATTCCCCCACTTTCCCCCTCTCTCACTCACACACGACTGCCCATTCCTCTATTCTTTCTCACAACTCAACCACAGACCTTCAACTACCCATGGCCGCCACTGCCGCCACCGCCACCCTCCTCCGGGCCACCCCTTTTCTTGGCCAGGCCAGAGCCTCTCCTCAAAACCCCCTCAGAGATGTCGTCGCCATGGGAACTGGAAAATACACCATGGTCTTTACTCACTCACTTACTCTGTCTTTTTTTTTTTTTTTTTTTACATATATATATCTCTCTCTGTTTTTGGGGTGTTCTTGAAGATTGATGGTTTTTGTTTTCCAATTTTGGATAGAGTAATGATTTGTGGTATGGACCCGATAGAGTTAAGTACTTGGGGCCGTTTTCAGCTCAGACTCCATCGTACTTGAACGGTGAGTTCCCTGGTGATTATGGATGGGACACTGCTGGCTTGTCCGCCGATCCCGAGGCCTTCGCCAAGAACCGAGCTCTTGAGGTAGTTCATTTTAGTTTATCTACTCTCTTATTGTTTTCTTTTGATCTTTGTATGTCCAACTGGGTATTCTACTTCTAAAAATGACTATTTTGGTACTCAACATAAAATTTAGAGAACAGTTTTGCTTTAATGATTAAAATTTGAGCAATGAGTTAAGTTGTAGATTCTAGAATTAATGTGTTGGGTTAGAAAGTTTCTGTTTGGGATGCTGAGATTAAGTACTTTGGTAAATAAAAATTAAAAAAAAAAAAAGAAAGGAAATTCTTCCATAAATGTACAAAATTTGCAATGCTAGCTGCGTTATTTAGTTGATTGGACACCTCTGATAACTTTAAAACTAAATGACGATCAAATTTGCAGGTAATCCACGGAAGGTGGGCAATGTTGGGCGCTTTGGGTTGCATAACACCCGAAGTCTTAGAAAAATGGCTTAAAGTGGACTTCAAGGAGCCAGTATGGTTCAAGGCAGGATCCCAAATCTTCACAGAAGGAGGTCTAGACTACTTAGGCAACCCGAACTTGGTCCACGCCCAAAGCATTCTAGCCGTGTTGGGGTTCCAAGTGGTCCTCATGGGTCTAGTAGAAGGGTTCCGCATCAACGGCCTTGATGGCGTCGGCGAGGGCAATGACCTGTACCCAGGCGGTCAATACTTTGATCCACTTGGACTGGCTGATGACCCTGTCACCTTCGCTGAGCTGAAGGTGAAGGAGATCAAGAATGGGCGTCTTGCCATGTTTTCCATGTTTGGATTCTTCGTTCAAGCCATTGTGACCGGAAAGGGTCCTCTTGAGAACCTTCTTGACCACCTTGATGACCCTGTGGCTAACAATGCTTGGGTTTATGCCACCAAGTTTGCCCCTGGCTCATAAGTATTTCACATTAATTATTGAAATTGAACAAGCTAAGTTTGTTTGTTGTGTAAATTGTTTGTAGTTCTCTGGGCGTTTTTTTTTGGTGTGGGTGGATGTGATTATAATTAGATGGATGAGTATTAAGGTGGATCAATGGACATTAATTCTCACTTGATCAAATGACTTTAATGTTCTTAATCTTAGTTATTACATCATTTAATTAAAGGTAGTCTTGATTGTAGTGATTTGATCATTTACTTTTTGGTAGTTACTTAGCAAGTAAATATATATGTTTTAAAAGAACCCAACG

mRNA sequence

ATGGCCGCCACTGCCGCCACCGCCACCCTCCTCCGGGCCACCCCTTTTCTTGGCCAGGCCAGAGCCTCTCCTCAAAACCCCCTCAGAGATGTCGTCGCCATGGGAACTGGAAAATACACCATGAGTAATGATTTGTGGTATGGACCCGATAGAGTTAAGTACTTGGGGCCGTTTTCAGCTCAGACTCCATCGTACTTGAACGGTGAGTTCCCTGGTGATTATGGATGGGACACTGCTGGCTTGTCCGCCGATCCCGAGGCCTTCGCCAAGAACCGAGCTCTTGAGGTAATCCACGGAAGGTGGGCAATGTTGGGCGCTTTGGGTTGCATAACACCCGAAGTCTTAGAAAAATGGCTTAAAGTGGACTTCAAGGAGCCAGTATGGTTCAAGGCAGGATCCCAAATCTTCACAGAAGGAGGTCTAGACTACTTAGGCAACCCGAACTTGGTCCACGCCCAAAGCATTCTAGCCGTGTTGGGGTTCCAAGTGGTCCTCATGGGTCTAGTAGAAGGGTTCCGCATCAACGGCCTTGATGGCGTCGGCGAGGGCAATGACCTGTACCCAGGCGGTCAATACTTTGATCCACTTGGACTGGCTGATGACCCTGTCACCTTCGCTGAGCTGAAGGTGAAGGAGATCAAGAATGGGCGTCTTGCCATGTTTTCCATGTTTGGATTCTTCGTTCAAGCCATTGTGACCGGAAAGGGTCCTCTTGAGAACCTTCTTGACCACCTTGATGACCCTGTGGCTAACAATGCTTGGGTTTATGCCACCAAGTTTGCCCCTGGCTCATAA

Coding sequence (CDS)

ATGGCCGCCACTGCCGCCACCGCCACCCTCCTCCGGGCCACCCCTTTTCTTGGCCAGGCCAGAGCCTCTCCTCAAAACCCCCTCAGAGATGTCGTCGCCATGGGAACTGGAAAATACACCATGAGTAATGATTTGTGGTATGGACCCGATAGAGTTAAGTACTTGGGGCCGTTTTCAGCTCAGACTCCATCGTACTTGAACGGTGAGTTCCCTGGTGATTATGGATGGGACACTGCTGGCTTGTCCGCCGATCCCGAGGCCTTCGCCAAGAACCGAGCTCTTGAGGTAATCCACGGAAGGTGGGCAATGTTGGGCGCTTTGGGTTGCATAACACCCGAAGTCTTAGAAAAATGGCTTAAAGTGGACTTCAAGGAGCCAGTATGGTTCAAGGCAGGATCCCAAATCTTCACAGAAGGAGGTCTAGACTACTTAGGCAACCCGAACTTGGTCCACGCCCAAAGCATTCTAGCCGTGTTGGGGTTCCAAGTGGTCCTCATGGGTCTAGTAGAAGGGTTCCGCATCAACGGCCTTGATGGCGTCGGCGAGGGCAATGACCTGTACCCAGGCGGTCAATACTTTGATCCACTTGGACTGGCTGATGACCCTGTCACCTTCGCTGAGCTGAAGGTGAAGGAGATCAAGAATGGGCGTCTTGCCATGTTTTCCATGTTTGGATTCTTCGTTCAAGCCATTGTGACCGGAAAGGGTCCTCTTGAGAACCTTCTTGACCACCTTGATGACCCTGTGGCTAACAATGCTTGGGTTTATGCCACCAAGTTTGCCCCTGGCTCATAA

Homology

[Close]

BLAST of CSPI03G05850 vs. Swiss-Prot
Match: CB23_SOLLC (Chlorophyll a-b binding protein 13, chloroplastic OS=Solanum lycopersicum GN=CAB13 PE=1 SV=1)

HSP 1 Score: 506.5 bits (1303), Expect = 1.7e-142
Identity = 239/264 (90.53%), Postives = 254/264 (96.21%), Query Frame = 1


Query: 1   MAATAATATLLRATPFLGQARASPQNPLRDVVAMGTGKYTMSNDLWYGPDRVKYLGPFSA 60
           MAATA++ T+++ATPFLGQ + +  NPLRDVVAMG+ ++TMSNDLWYGPDRVKYLGPFSA
Sbjct: 4   MAATASSTTVVKATPFLGQTKNA--NPLRDVVAMGSARFTMSNDLWYGPDRVKYLGPFSA 63

Query: 61  QTPSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLEKWLK 120
           QTPSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCI PEVLEKW+K
Sbjct: 64  QTPSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCIFPEVLEKWVK 123

Query: 121 VDFKEPVWFKAGSQIFTEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLDGV 180
           VDFKEPVWFKAGSQIF++GGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGL GV
Sbjct: 124 VDFKEPVWFKAGSQIFSDGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGV 183

Query: 181 GEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLEN 240
           GEGNDLYPGGQYFDPLGLADDP TFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLEN
Sbjct: 184 GEGNDLYPGGQYFDPLGLADDPTTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLEN 243

Query: 241 LLDHLDDPVANNAWVYATKFAPGS 265
           LLDHLD+PVANNAWVYATKF PG+
Sbjct: 244 LLDHLDNPVANNAWVYATKFVPGA 265

[Close]

BLAST of CSPI03G05850 vs. Swiss-Prot
Match: CB3_ARATH (Chlorophyll a-b binding protein 3, chloroplastic OS=Arabidopsis thaliana GN=LHCB3 PE=1 SV=1)

HSP 1 Score: 496.5 bits (1277), Expect = 1.8e-139
Identity = 233/265 (87.92%), Postives = 251/265 (94.72%), Query Frame = 1


Query: 1   MAAT-AATATLLRATPFLGQARASPQNPLRDVVAMGTGKYTMSNDLWYGPDRVKYLGPFS 60
           MA+T  +++++L  T FLGQ +AS  NPLRDVV++G+ KYTM NDLWYGPDRVKYLGPFS
Sbjct: 1   MASTFTSSSSVLTPTTFLGQTKASSFNPLRDVVSLGSPKYTMGNDLWYGPDRVKYLGPFS 60

Query: 61  AQTPSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLEKWL 120
            QTPSYL GEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGA GCITPEVL+KW+
Sbjct: 61  VQTPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGAFGCITPEVLQKWV 120

Query: 121 KVDFKEPVWFKAGSQIFTEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLDG 180
           +VDFKEPVWFKAGSQIF+EGGLDYLGNPNLVHAQSILAVLGFQV+LMGLVEGFRINGLDG
Sbjct: 121 RVDFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVILMGLVEGFRINGLDG 180

Query: 181 VGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLE 240
           VGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLE
Sbjct: 181 VGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLE 240

Query: 241 NLLDHLDDPVANNAWVYATKFAPGS 265
           NLLDHLD+PVANNAW +ATKFAPG+
Sbjct: 241 NLLDHLDNPVANNAWAFATKFAPGA 265

[Close]

BLAST of CSPI03G05850 vs. Swiss-Prot
Match: CB23_HORVU (Chlorophyll a-b binding protein of LHCII type III, chloroplastic OS=Hordeum vulgare GN=LHBC PE=2 SV=1)

HSP 1 Score: 487.3 bits (1253), Expect = 1.1e-136
Identity = 232/268 (86.57%), Postives = 248/268 (92.54%), Query Frame = 1


Query: 1   MAAT---AATATLLRATPFL-GQARASPQNPLRDVVAMGTGKYTMSNDLWYGPDRVKYLG 60
           MA+T   AA+  ++  TPFL GQ RA+  +PLRD+ A   G+ TM NDLWYGPDRVKYLG
Sbjct: 1   MASTIMAAASRAVVAKTPFLSGQGRAASASPLRDIAAATNGRITMGNDLWYGPDRVKYLG 60

Query: 61  PFSAQTPSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLE 120
           PFSAQTPSYLNGEFPGDYGWDTAGLSADPEAFA+NRALEVIHGRWAMLGALGC+ PEVL+
Sbjct: 61  PFSAQTPSYLNGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCVFPEVLQ 120

Query: 121 KWLKVDFKEPVWFKAGSQIFTEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRING 180
           KW+ V+FKEPVWFKAGSQIF+EGGLDYLGNPNLVHAQSILAVLGFQV+LMGLVEGFRING
Sbjct: 121 KWVGVEFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVLLMGLVEGFRING 180

Query: 181 LDGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 240
           LDGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG
Sbjct: 181 LDGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 240

Query: 241 PLENLLDHLDDPVANNAWVYATKFAPGS 265
           PLENL DHLDDPVANNAWV+ATKFAPGS
Sbjct: 241 PLENLFDHLDDPVANNAWVFATKFAPGS 268

[Close]

BLAST of CSPI03G05850 vs. Swiss-Prot
Match: CB24_SOLLC (Chlorophyll a-b binding protein 4, chloroplastic OS=Solanum lycopersicum GN=CAB4 PE=2 SV=1)

HSP 1 Score: 370.5 bits (950), Expect = 1.5e-101
Identity = 186/262 (70.99%), Postives = 205/262 (78.24%), Query Frame = 1


Query: 11  LRATPFLGQARASPQNP-LRDVVAMGTGKYTMSN-------DLWYGPDRVKYLGPFSAQT 70
           ++ + F+GQA    QN  +R V   G G+ TM          +WYG DR KYLGPFS QT
Sbjct: 6   IQQSAFVGQAVGKSQNEFIRKVGNFGEGRITMRRTVKSAPQSIWYGEDRPKYLGPFSEQT 65

Query: 71  PSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLEKWLKVD 130
           PSYL GEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGC+ PE+L K   V 
Sbjct: 66  PSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSK-NGVK 125

Query: 131 FKEPVWFKAGSQIFTEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLDGVGE 190
           F E VWFKAGSQIF+EGGLDYLGNPNLVHAQSILA+   QVVLMG VEG+R+ G   +GE
Sbjct: 126 FGEAVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAIWACQVVLMGFVEGYRVGG-GPLGE 185

Query: 191 GND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL 250
           G D +YPGG  FDPLGLADDP  FAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP+ENL
Sbjct: 186 GLDKIYPGGA-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENL 245

Query: 251 LDHLDDPVANNAWVYATKFAPG 264
            DH++DPVANNAW YAT F PG
Sbjct: 246 SDHINDPVANNAWAYATNFVPG 264

[Close]

BLAST of CSPI03G05850 vs. Swiss-Prot
Match: CB23_TOBAC (Chlorophyll a-b binding protein 36, chloroplastic OS=Nicotiana tabacum GN=CAB36 PE=3 SV=1)

HSP 1 Score: 367.1 bits (941), Expect = 1.6e-100
Identity = 184/262 (70.23%), Postives = 202/262 (77.10%), Query Frame = 1


Query: 11  LRATPFLGQARASPQNPL-RDVVAMGTGKYTMSN-------DLWYGPDRVKYLGPFSAQT 70
           +  + F GQ     QN L R + +   G+ TM          +WYG DR KYLGPFS QT
Sbjct: 6   IEQSAFAGQTALKSQNELVRKIGSFNGGRATMRRTVKSAPQSIWYGEDRPKYLGPFSEQT 65

Query: 71  PSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLEKWLKVD 130
           PSYL GEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGC+ PE+L K   V 
Sbjct: 66  PSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSK-NGVK 125

Query: 131 FKEPVWFKAGSQIFTEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLDGVGE 190
           F E VWFKAGSQIF+EGGLDYLGNPNL+HAQSILAV   QVVLMGL+EG+R+ G   +GE
Sbjct: 126 FGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAVWASQVVLMGLIEGYRVGG-GPLGE 185

Query: 191 GND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL 250
           G D +YPGG  FDPLGLADDP  FAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP+ENL
Sbjct: 186 GLDKIYPGGA-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENL 245

Query: 251 LDHLDDPVANNAWVYATKFAPG 264
            DH+ DPVANNAW YAT F PG
Sbjct: 246 FDHVADPVANNAWAYATNFVPG 264

[Close]

BLAST of CSPI03G05850 vs. TrEMBL
Match: A0A0A0L6I8_CUCSA (Chlorophyll a-b binding protein, chloroplastic OS=Cucumis sativus GN=Csa_3G099680 PE=3 SV=1)

HSP 1 Score: 552.0 bits (1421), Expect = 4.0e-154
Identity = 264/264 (100.00%), Postives = 264/264 (100.00%), Query Frame = 1


Query: 1   MAATAATATLLRATPFLGQARASPQNPLRDVVAMGTGKYTMSNDLWYGPDRVKYLGPFSA 60
           MAATAATATLLRATPFLGQARASPQNPLRDVVAMGTGKYTMSNDLWYGPDRVKYLGPFSA
Sbjct: 1   MAATAATATLLRATPFLGQARASPQNPLRDVVAMGTGKYTMSNDLWYGPDRVKYLGPFSA 60

Query: 61  QTPSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLEKWLK 120
           QTPSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLEKWLK
Sbjct: 61  QTPSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLEKWLK 120

Query: 121 VDFKEPVWFKAGSQIFTEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLDGV 180
           VDFKEPVWFKAGSQIFTEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLDGV
Sbjct: 121 VDFKEPVWFKAGSQIFTEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLDGV 180

Query: 181 GEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLEN 240
           GEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLEN
Sbjct: 181 GEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLEN 240

Query: 241 LLDHLDDPVANNAWVYATKFAPGS 265
           LLDHLDDPVANNAWVYATKFAPGS
Sbjct: 241 LLDHLDDPVANNAWVYATKFAPGS 264

[Close]

BLAST of CSPI03G05850 vs. TrEMBL
Match: V7BX51_PHAVU (Chlorophyll a-b binding protein, chloroplastic OS=Phaseolus vulgaris GN=PHAVU_005G085800g PE=3 SV=1)

HSP 1 Score: 515.8 bits (1327), Expect = 3.2e-143
Identity = 241/264 (91.29%), Postives = 257/264 (97.35%), Query Frame = 1


Query: 1   MAATAATATLLRATPFLGQARASPQNPLRDVVAMGTGKYTMSNDLWYGPDRVKYLGPFSA 60
           MAAT+++ T+L++TPFLGQ + +  NPLRDVV+MGTGKYTMSN+LWYGPDRVKYLGPFSA
Sbjct: 6   MAATSSSGTVLKSTPFLGQGKGANANPLRDVVSMGTGKYTMSNELWYGPDRVKYLGPFSA 65

Query: 61  QTPSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLEKWLK 120
           QTPSYL GEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLEKWL+
Sbjct: 66  QTPSYLKGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLEKWLR 125

Query: 121 VDFKEPVWFKAGSQIFTEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLDGV 180
           VDFKEPVWFKAG+QIF+EGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLDGV
Sbjct: 126 VDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLDGV 185

Query: 181 GEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLEN 240
           GEGN+LYPGGQYFDPLGLADDPV FAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLEN
Sbjct: 186 GEGNNLYPGGQYFDPLGLADDPVNFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLEN 245

Query: 241 LLDHLDDPVANNAWVYATKFAPGS 265
           LLDHLD+PVANNAWV+ATKFAPGS
Sbjct: 246 LLDHLDNPVANNAWVFATKFAPGS 269

[Close]

BLAST of CSPI03G05850 vs. TrEMBL
Match: Q9XQB1_VIGRR (Chlorophyll a-b binding protein, chloroplastic OS=Vigna radiata var. radiata GN=CipLhcb3 PE=2 SV=1)

HSP 1 Score: 515.8 bits (1327), Expect = 3.2e-143
Identity = 242/264 (91.67%), Postives = 256/264 (96.97%), Query Frame = 1


Query: 1   MAATAATATLLRATPFLGQARASPQNPLRDVVAMGTGKYTMSNDLWYGPDRVKYLGPFSA 60
           MAAT+ + T+L+ TPFLGQ +AS  NPLRDVV+MG+GKY+MSN+LWYGPDRVKYLGPFSA
Sbjct: 6   MAATSGSGTVLKPTPFLGQGKASNGNPLRDVVSMGSGKYSMSNELWYGPDRVKYLGPFSA 65

Query: 61  QTPSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLEKWLK 120
           QTPSYL GEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLEKWL+
Sbjct: 66  QTPSYLKGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLEKWLR 125

Query: 121 VDFKEPVWFKAGSQIFTEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLDGV 180
           VDFKEPVWFKAG+QIF+EGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLDGV
Sbjct: 126 VDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLDGV 185

Query: 181 GEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLEN 240
           GEGN+LYPGGQYFDPLGLADDP TFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLEN
Sbjct: 186 GEGNNLYPGGQYFDPLGLADDPATFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLEN 245

Query: 241 LLDHLDDPVANNAWVYATKFAPGS 265
           LLDHLD+PVANNAWVYATKFAPGS
Sbjct: 246 LLDHLDNPVANNAWVYATKFAPGS 269

[Close]

BLAST of CSPI03G05850 vs. TrEMBL
Match: V7AJY3_PHAVU (Chlorophyll a-b binding protein, chloroplastic OS=Phaseolus vulgaris GN=PHAVU_011G155700g PE=3 SV=1)

HSP 1 Score: 514.6 bits (1324), Expect = 7.1e-143
Identity = 241/264 (91.29%), Postives = 254/264 (96.21%), Query Frame = 1


Query: 1   MAATAATATLLRATPFLGQARASPQNPLRDVVAMGTGKYTMSNDLWYGPDRVKYLGPFSA 60
           MAA+A+T T+L+ TPFLGQ+R +  NPLRDVV+MG GKYTM NDLWYGPDRVKYLGPFSA
Sbjct: 6   MAASASTGTVLKPTPFLGQSRGTNANPLRDVVSMGPGKYTMGNDLWYGPDRVKYLGPFSA 65

Query: 61  QTPSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLEKWLK 120
           QTPSYL GEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLE+W+K
Sbjct: 66  QTPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLERWVK 125

Query: 121 VDFKEPVWFKAGSQIFTEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLDGV 180
           VDFKEPVWFKAG+QIF+EGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGL GV
Sbjct: 126 VDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGV 185

Query: 181 GEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLEN 240
           GEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLEN
Sbjct: 186 GEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLEN 245

Query: 241 LLDHLDDPVANNAWVYATKFAPGS 265
           LLDH+D+PVANNAWVYATKF PGS
Sbjct: 246 LLDHIDNPVANNAWVYATKFVPGS 269

[Close]

BLAST of CSPI03G05850 vs. TrEMBL
Match: W9RGN8_9ROSA (Chlorophyll a-b binding protein, chloroplastic OS=Morus notabilis GN=L484_018739 PE=3 SV=1)

HSP 1 Score: 513.8 bits (1322), Expect = 1.2e-142
Identity = 243/264 (92.05%), Postives = 251/264 (95.08%), Query Frame = 1


Query: 1   MAATAATATLLRATPFLGQARASPQNPLRDVVAMGTGKYTMSNDLWYGPDRVKYLGPFSA 60
           MAATA+++ LLR TPFLGQ R      LRDVV MGTGKYTM N+LWYGPDRVKYLGPFSA
Sbjct: 1   MAATASSSALLRPTPFLGQNRGQSSTSLRDVVPMGTGKYTMGNELWYGPDRVKYLGPFSA 60

Query: 61  QTPSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLEKWLK 120
           QTPSYL GEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLEKW+K
Sbjct: 61  QTPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLEKWVK 120

Query: 121 VDFKEPVWFKAGSQIFTEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLDGV 180
           VDFKEPVWFKAG+QIF+EGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLDGV
Sbjct: 121 VDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLDGV 180

Query: 181 GEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLEN 240
           GEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLEN
Sbjct: 181 GEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLEN 240

Query: 241 LLDHLDDPVANNAWVYATKFAPGS 265
           LLDHLD+PVANNAWVYATKF PGS
Sbjct: 241 LLDHLDNPVANNAWVYATKFVPGS 264

[Close]

BLAST of CSPI03G05850 vs. TAIR10
Match: AT5G54270.1 (AT5G54270.1 light-harvesting chlorophyll B-binding protein 3)

HSP 1 Score: 496.5 bits (1277), Expect = 1.0e-140
Identity = 233/265 (87.92%), Postives = 251/265 (94.72%), Query Frame = 1


Query: 1   MAAT-AATATLLRATPFLGQARASPQNPLRDVVAMGTGKYTMSNDLWYGPDRVKYLGPFS 60
           MA+T  +++++L  T FLGQ +AS  NPLRDVV++G+ KYTM NDLWYGPDRVKYLGPFS
Sbjct: 1   MASTFTSSSSVLTPTTFLGQTKASSFNPLRDVVSLGSPKYTMGNDLWYGPDRVKYLGPFS 60

Query: 61  AQTPSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLEKWL 120
            QTPSYL GEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGA GCITPEVL+KW+
Sbjct: 61  VQTPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGAFGCITPEVLQKWV 120

Query: 121 KVDFKEPVWFKAGSQIFTEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLDG 180
           +VDFKEPVWFKAGSQIF+EGGLDYLGNPNLVHAQSILAVLGFQV+LMGLVEGFRINGLDG
Sbjct: 121 RVDFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVILMGLVEGFRINGLDG 180

Query: 181 VGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLE 240
           VGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLE
Sbjct: 181 VGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLE 240

Query: 241 NLLDHLDDPVANNAWVYATKFAPGS 265
           NLLDHLD+PVANNAW +ATKFAPG+
Sbjct: 241 NLLDHLDNPVANNAWAFATKFAPGA 265

[Close]

BLAST of CSPI03G05850 vs. TAIR10
Match: AT2G05100.1 (AT2G05100.1 photosystem II light harvesting complex gene 2.1)

HSP 1 Score: 366.3 bits (939), Expect = 1.6e-101
Identity = 183/263 (69.58%), Postives = 201/263 (76.43%), Query Frame = 1


Query: 11  LRATPFLGQARASPQNPL-RDVVAMGTGKYTMSN-------DLWYGPDRVKYLGPFSAQT 70
           ++ + F GQ    P N L R V   G G+ TM          +WYGPDR KYLGPFS  T
Sbjct: 6   IQQSSFAGQTALKPSNELLRKVGVSGGGRVTMRRTVKSTPQSIWYGPDRPKYLGPFSENT 65

Query: 71  PSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLEKWLKVD 130
           PSYL GE+PGDYGWDTAGLSADPE FAKNR LEVIH RWAMLGALGC  PE+L K   V 
Sbjct: 66  PSYLTGEYPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCTFPEILSK-NGVK 125

Query: 131 FKEPVWFKAGSQIFTEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLDGVGE 190
           F E VWFKAGSQIF+EGGLDYLGNPNL+HAQSILA+   QVVLMG +EG+RI G   +GE
Sbjct: 126 FGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWAVQVVLMGFIEGYRIGG-GPLGE 185

Query: 191 GND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL 250
           G D LYPGG  FDPL LA+DP  F+ELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENL
Sbjct: 186 GLDPLYPGGA-FDPLNLAEDPEAFSELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENL 245

Query: 251 LDHLDDPVANNAWVYATKFAPGS 265
            DHL DPVANNAW YAT F PG+
Sbjct: 246 FDHLADPVANNAWSYATNFVPGN 265

[Close]

BLAST of CSPI03G05850 vs. TAIR10
Match: AT2G05070.1 (AT2G05070.1 photosystem II light harvesting complex gene 2.2)

HSP 1 Score: 363.6 bits (932), Expect = 1.0e-100
Identity = 181/262 (69.08%), Postives = 201/262 (76.72%), Query Frame = 1


Query: 11  LRATPFLGQARASPQNPL-RDVVAMGTGKYTMSN-------DLWYGPDRVKYLGPFSAQT 70
           ++ + F GQ    P + L + V  +G G+ TM          +WYGPDR KYLGPFS  T
Sbjct: 6   IQQSSFAGQTALKPSSDLIQKVGVLGGGRVTMRRTVKSTPQSIWYGPDRPKYLGPFSENT 65

Query: 71  PSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLEKWLKVD 130
           PSYL GE+PGDYGWDTAGLSADPE FAKNR LEVIH RWAMLGALGC  PE+L K   V 
Sbjct: 66  PSYLTGEYPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCTFPEILSK-NGVK 125

Query: 131 FKEPVWFKAGSQIFTEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLDGVGE 190
           F E VWFKAGSQIF+EGGLDYLGNPNL+HAQSILA+   QVVLMG +EG+RI G   +GE
Sbjct: 126 FGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWAVQVVLMGFIEGYRIGG-GPLGE 185

Query: 191 GND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL 250
           G D LYPGG  FDPL LA+DP  F+ELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENL
Sbjct: 186 GLDPLYPGGA-FDPLNLAEDPEAFSELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENL 245

Query: 251 LDHLDDPVANNAWVYATKFAPG 264
            DHL DPVANNAW YAT F PG
Sbjct: 246 FDHLADPVANNAWSYATNFVPG 264

[Close]

BLAST of CSPI03G05850 vs. TAIR10
Match: AT3G27690.1 (AT3G27690.1 photosystem II light harvesting complex gene 2.3)

HSP 1 Score: 359.4 bits (921), Expect = 1.9e-99
Identity = 179/263 (68.06%), Postives = 198/263 (75.29%), Query Frame = 1


Query: 11  LRATPFLGQARASPQNPLRDVVAM--GTGKYTMSN-------DLWYGPDRVKYLGPFSAQ 70
           ++ + F GQ    P N L   +    G G+  M          +WYGPDR KYLGPFS  
Sbjct: 6   IQHSSFAGQTTLKPSNDLLRKIGASNGGGRIIMRRTVKSTPQSIWYGPDRPKYLGPFSEN 65

Query: 71  TPSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLEKWLKV 130
           TPSYL GE+PGDYGWDTAGLSADPE FAKNR LEVIH RWAMLGALGC  PE+L K   V
Sbjct: 66  TPSYLTGEYPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCTFPEILSK-NGV 125

Query: 131 DFKEPVWFKAGSQIFTEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLDGVG 190
            F E VWFKAGSQIF+EGGLDYLGNPNL+HAQSILA+   QVVLMG +EG+RI G   +G
Sbjct: 126 KFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFIEGYRIGG-GPLG 185

Query: 191 EGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLEN 250
           EG D LYPGG  FDPL LA+DP  F+ELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+EN
Sbjct: 186 EGLDPLYPGGA-FDPLNLAEDPEAFSELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIEN 245

Query: 251 LLDHLDDPVANNAWVYATKFAPG 264
           L DH+ DPVANNAW YAT F PG
Sbjct: 246 LFDHIADPVANNAWAYATNFVPG 265

[Close]

BLAST of CSPI03G05850 vs. TAIR10
Match: AT2G34430.1 (AT2G34430.1 light-harvesting chlorophyll-protein complex II subunit B1)

HSP 1 Score: 353.6 bits (906), Expect = 1.1e-97
Identity = 180/268 (67.16%), Postives = 202/268 (75.37%), Query Frame = 1


Query: 6   ATATLLRATPFLGQARASPQNPLRDVVAMGTGKYTM---------SNDLWYGPDRVKYLG 65
           A +T+  ++P L   +A   +P    V  GTG+ TM         S   WYG DRVKYLG
Sbjct: 2   AASTMALSSPAL-TGKAVKLSPAASEV-FGTGRITMRKASKPTGPSGSPWYGSDRVKYLG 61

Query: 66  PFSAQTPSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLE 125
           PFS + PSYL GEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGC+ PE+L 
Sbjct: 62  PFSGEPPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLA 121

Query: 126 KWLKVDFKEPVWFKAGSQIFTEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRING 185
           +   V F E VWFKAGSQIF++GGLDYLGNP+LVHAQSILA+   QV+LMG VEG+R+ G
Sbjct: 122 R-NGVKFGEAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAG 181

Query: 186 LDGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGK 245
              +GE  D LYPGG  FDPLGLA DP  FAELKVKE+KNGRLAMFSMFGFFVQAIVTGK
Sbjct: 182 DGPLGEAEDLLYPGGS-FDPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGK 241

Query: 246 GPLENLLDHLDDPVANNAWVYATKFAPG 264
           GPLENL DHL DPV NNAW +AT F PG
Sbjct: 242 GPLENLADHLADPVNNNAWAFATNFVPG 265

[Close]

BLAST of CSPI03G05850 vs. NCBI nr
Match: gi|449463148|ref|XP_004149296.1| (PREDICTED: chlorophyll a-b binding protein 13, chloroplastic [Cucumis sativus])

HSP 1 Score: 552.0 bits (1421), Expect = 5.8e-154
Identity = 264/264 (100.00%), Postives = 264/264 (100.00%), Query Frame = 1


Query: 1   MAATAATATLLRATPFLGQARASPQNPLRDVVAMGTGKYTMSNDLWYGPDRVKYLGPFSA 60
           MAATAATATLLRATPFLGQARASPQNPLRDVVAMGTGKYTMSNDLWYGPDRVKYLGPFSA
Sbjct: 1   MAATAATATLLRATPFLGQARASPQNPLRDVVAMGTGKYTMSNDLWYGPDRVKYLGPFSA 60

Query: 61  QTPSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLEKWLK 120
           QTPSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLEKWLK
Sbjct: 61  QTPSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLEKWLK 120

Query: 121 VDFKEPVWFKAGSQIFTEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLDGV 180
           VDFKEPVWFKAGSQIFTEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLDGV
Sbjct: 121 VDFKEPVWFKAGSQIFTEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLDGV 180

Query: 181 GEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLEN 240
           GEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLEN
Sbjct: 181 GEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLEN 240

Query: 241 LLDHLDDPVANNAWVYATKFAPGS 265
           LLDHLDDPVANNAWVYATKFAPGS
Sbjct: 241 LLDHLDDPVANNAWVYATKFAPGS 264

[Close]

BLAST of CSPI03G05850 vs. NCBI nr
Match: gi|659102746|ref|XP_008452292.1| (PREDICTED: chlorophyll a-b binding protein 13, chloroplastic [Cucumis melo])

HSP 1 Score: 538.1 bits (1385), Expect = 8.6e-150
Identity = 255/264 (96.59%), Postives = 259/264 (98.11%), Query Frame = 1


Query: 1   MAATAATATLLRATPFLGQARASPQNPLRDVVAMGTGKYTMSNDLWYGPDRVKYLGPFSA 60
           MA+TA +ATLLRATPFLGQ R SPQNPLRD VAMGTGKYTM NDLWYGPDRVKYLGPFSA
Sbjct: 1   MASTATSATLLRATPFLGQTRGSPQNPLRDFVAMGTGKYTMGNDLWYGPDRVKYLGPFSA 60

Query: 61  QTPSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLEKWLK 120
           QTPSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLEKWLK
Sbjct: 61  QTPSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLEKWLK 120

Query: 121 VDFKEPVWFKAGSQIFTEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLDGV 180
           VDFKEPVWFKAG+QIFTEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLDGV
Sbjct: 121 VDFKEPVWFKAGAQIFTEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLDGV 180

Query: 181 GEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLEN 240
           GEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLEN
Sbjct: 181 GEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLEN 240

Query: 241 LLDHLDDPVANNAWVYATKFAPGS 265
           LLDHLD+PVANNAWVYATKFAPGS
Sbjct: 241 LLDHLDNPVANNAWVYATKFAPGS 264

[Close]

BLAST of CSPI03G05850 vs. NCBI nr
Match: gi|955073176|ref|NP_001304228.1| (chlorophyll a-b binding protein 13, chloroplastic [Vigna radiata])

HSP 1 Score: 515.8 bits (1327), Expect = 4.6e-143
Identity = 242/264 (91.67%), Postives = 256/264 (96.97%), Query Frame = 1


Query: 1   MAATAATATLLRATPFLGQARASPQNPLRDVVAMGTGKYTMSNDLWYGPDRVKYLGPFSA 60
           MAAT+ + T+L+ TPFLGQ +AS  NPLRDVV+MG+GKY+MSN+LWYGPDRVKYLGPFSA
Sbjct: 6   MAATSGSGTVLKPTPFLGQGKASNGNPLRDVVSMGSGKYSMSNELWYGPDRVKYLGPFSA 65

Query: 61  QTPSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLEKWLK 120
           QTPSYL GEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLEKWL+
Sbjct: 66  QTPSYLKGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLEKWLR 125

Query: 121 VDFKEPVWFKAGSQIFTEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLDGV 180
           VDFKEPVWFKAG+QIF+EGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLDGV
Sbjct: 126 VDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLDGV 185

Query: 181 GEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLEN 240
           GEGN+LYPGGQYFDPLGLADDP TFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLEN
Sbjct: 186 GEGNNLYPGGQYFDPLGLADDPATFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLEN 245

Query: 241 LLDHLDDPVANNAWVYATKFAPGS 265
           LLDHLD+PVANNAWVYATKFAPGS
Sbjct: 246 LLDHLDNPVANNAWVYATKFAPGS 269

[Close]

BLAST of CSPI03G05850 vs. NCBI nr
Match: gi|950945749|ref|XP_014494334.1| (PREDICTED: chlorophyll a-b binding protein 13, chloroplastic [Vigna radiata var. radiata])

HSP 1 Score: 515.8 bits (1327), Expect = 4.6e-143
Identity = 242/264 (91.67%), Postives = 255/264 (96.59%), Query Frame = 1


Query: 1   MAATAATATLLRATPFLGQARASPQNPLRDVVAMGTGKYTMSNDLWYGPDRVKYLGPFSA 60
           MAA+ +T T+L+ TPFLGQ+RA+  NPLRDVV+MGTGKYTM N+LWYGPDRVKYLGPFSA
Sbjct: 6   MAASTSTGTVLKPTPFLGQSRATNANPLRDVVSMGTGKYTMGNELWYGPDRVKYLGPFSA 65

Query: 61  QTPSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLEKWLK 120
           QTPSYL GEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLEKWL+
Sbjct: 66  QTPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLEKWLR 125

Query: 121 VDFKEPVWFKAGSQIFTEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLDGV 180
           V+FKEPVWFKAG+QIF+EGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGL GV
Sbjct: 126 VEFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGV 185

Query: 181 GEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLEN 240
           GEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLEN
Sbjct: 186 GEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLEN 245

Query: 241 LLDHLDDPVANNAWVYATKFAPGS 265
           LLDHLD+PVANNAWVYATKF PGS
Sbjct: 246 LLDHLDNPVANNAWVYATKFVPGS 269

[Close]

BLAST of CSPI03G05850 vs. NCBI nr
Match: gi|593698316|ref|XP_007149631.1| (hypothetical protein PHAVU_005G085800g [Phaseolus vulgaris])

HSP 1 Score: 515.8 bits (1327), Expect = 4.6e-143
Identity = 241/264 (91.29%), Postives = 257/264 (97.35%), Query Frame = 1


Query: 1   MAATAATATLLRATPFLGQARASPQNPLRDVVAMGTGKYTMSNDLWYGPDRVKYLGPFSA 60
           MAAT+++ T+L++TPFLGQ + +  NPLRDVV+MGTGKYTMSN+LWYGPDRVKYLGPFSA
Sbjct: 6   MAATSSSGTVLKSTPFLGQGKGANANPLRDVVSMGTGKYTMSNELWYGPDRVKYLGPFSA 65

Query: 61  QTPSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLEKWLK 120
           QTPSYL GEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLEKWL+
Sbjct: 66  QTPSYLKGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLEKWLR 125

Query: 121 VDFKEPVWFKAGSQIFTEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLDGV 180
           VDFKEPVWFKAG+QIF+EGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLDGV
Sbjct: 126 VDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLDGV 185

Query: 181 GEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLEN 240
           GEGN+LYPGGQYFDPLGLADDPV FAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLEN
Sbjct: 186 GEGNNLYPGGQYFDPLGLADDPVNFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLEN 245

Query: 241 LLDHLDDPVANNAWVYATKFAPGS 265
           LLDHLD+PVANNAWV+ATKFAPGS
Sbjct: 246 LLDHLDNPVANNAWVFATKFAPGS 269

The following BLAST results are available for this feature:

BLAST of CSPI03G05850 vs. Swiss-Prot


Match Name	E-value	Identity	Description
CB23_SOLLC	1.7e-142	90.53	Chlorophyll a-b binding protein 13, chloroplastic OS=Solanum lycopersicum GN=CAB...	[more]
CB3_ARATH	1.8e-139	87.92	Chlorophyll a-b binding protein 3, chloroplastic OS=Arabidopsis thaliana GN=LHCB...	[more]
CB23_HORVU	1.1e-136	86.57	Chlorophyll a-b binding protein of LHCII type III, chloroplastic OS=Hordeum vulg...	[more]
CB24_SOLLC	1.5e-101	70.99	Chlorophyll a-b binding protein 4, chloroplastic OS=Solanum lycopersicum GN=CAB4...	[more]
CB23_TOBAC	1.6e-100	70.23	Chlorophyll a-b binding protein 36, chloroplastic OS=Nicotiana tabacum GN=CAB36 ...	[more]

BLAST of CSPI03G05850 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L6I8_CUCSA	4.0e-154	100.00	Chlorophyll a-b binding protein, chloroplastic OS=Cucumis sativus GN=Csa_3G09968...	[more]
V7BX51_PHAVU	3.2e-143	91.29	Chlorophyll a-b binding protein, chloroplastic OS=Phaseolus vulgaris GN=PHAVU_00...	[more]
Q9XQB1_VIGRR	3.2e-143	91.67	Chlorophyll a-b binding protein, chloroplastic OS=Vigna radiata var. radiata GN=...	[more]
V7AJY3_PHAVU	7.1e-143	91.29	Chlorophyll a-b binding protein, chloroplastic OS=Phaseolus vulgaris GN=PHAVU_01...	[more]
W9RGN8_9ROSA	1.2e-142	92.05	Chlorophyll a-b binding protein, chloroplastic OS=Morus notabilis GN=L484_018739...	[more]

BLAST of CSPI03G05850 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G54270.1	1.0e-140	87.92	light-harvesting chlorophyll B-binding protein 3	[more]
AT2G05100.1	1.6e-101	69.58	photosystem II light harvesting complex gene 2.1	[more]
AT2G05070.1	1.0e-100	69.08	photosystem II light harvesting complex gene 2.2	[more]
AT3G27690.1	1.9e-99	68.06	photosystem II light harvesting complex gene 2.3	[more]
AT2G34430.1	1.1e-97	67.16	light-harvesting chlorophyll-protein complex II subunit B1	[more]

BLAST of CSPI03G05850 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449463148\|ref\|XP_004149296.1\|	5.8e-154	100.00	PREDICTED: chlorophyll a-b binding protein 13, chloroplastic [Cucumis sativus]	[more]
gi\|659102746\|ref\|XP_008452292.1\|	8.6e-150	96.59	PREDICTED: chlorophyll a-b binding protein 13, chloroplastic [Cucumis melo]	[more]
gi\|955073176\|ref\|NP_001304228.1\|	4.6e-143	91.67	chlorophyll a-b binding protein 13, chloroplastic [Vigna radiata]	[more]
gi\|950945749\|ref\|XP_014494334.1\|	4.6e-143	91.67	PREDICTED: chlorophyll a-b binding protein 13, chloroplastic [Vigna radiata var....	[more]
gi\|593698316\|ref\|XP_007149631.1\|	4.6e-143	91.29	hypothetical protein PHAVU_005G085800g [Phaseolus vulgaris]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001344	Chloro_AB-bd_pln
IPR022796	Chloroa_b-bind
IPR023329	Chlorophyll_a/b-bd_dom_sf

Vocabulary: **Biological Process**
Term	Definition
GO:0009765	photosynthesis, light harvesting

Vocabulary: **Cellular Component**
Term	Definition
GO:0016020	membrane

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009765	photosynthesis, light harvesting
biological_process	GO:0018298	protein-chromophore linkage
biological_process	GO:0009644	response to high light intensity
biological_process	GO:0009635	response to herbicide
biological_process	GO:0009737	response to abscisic acid
biological_process	GO:0010119	regulation of stomatal movement
biological_process	GO:0009769	photosynthesis, light harvesting in photosystem II
biological_process	GO:0055114	oxidation-reduction process
biological_process	GO:0017004	cytochrome complex assembly
cellular_component	GO:0016020	membrane
cellular_component	GO:0009523	photosystem II
cellular_component	GO:0009522	photosystem I
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0009535	chloroplast thylakoid membrane
molecular_function	GO:0005198	structural molecule activity
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0016168	chlorophyll binding
molecular_function	GO:0019904	protein domain specific binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI03G05850.1	CSPI03G05850.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001344	Chlorophyll A-B binding protein, plant	PANTHER	PTHR21649	CHLOROPHYLL A/B BINDING PROTEIN	coord: 1..264 score: 3.4E
IPR022796	Chlorophyll A-B binding protein	PFAM	PF00504	Chloroa_b-bind	coord: 63..230 score: 2.2
IPR023329	Chlorophyll a/b binding protein domain	GENE3D	G3DSA:1.10.3460.10		coord: 55..256 score: 2.9
IPR023329	Chlorophyll a/b binding protein domain	unknown	SSF103511	Chlorophyll a-b binding protein	coord: 45..261 score: 6.67
None	No IPR available	PANTHER	PTHR21649:SF11	SUBFAMILY NOT NAMED	coord: 1..264 score: 3.4E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI03G05850	Cla011748	Watermelon (97103) v1	cpiwmB224
CSPI03G05850	Csa3G099680	Cucumber (Chinese Long) v2	cpicuB120
CSPI03G05850	MELO3C016556	Melon (DHL92) v3.5.1	cpimeB242
CSPI03G05850	ClCG10G006490	Watermelon (Charleston Gray)	cpiwcgB190
CSPI03G05850	Lsi05G006850	Bottle gourd (USVL1VR-Ls)	cpilsiB197
CSPI03G05850	MELO3C016556.2	Melon (DHL92) v3.6.1	cpimedB226
CSPI03G05850	CsaV3_3G005950	Cucumber (Chinese Long) v3	cpicucB144
CSPI03G05850	Cla97C10G190440	Watermelon (97103) v2	cpiwmbB184
CSPI03G05850	Cucsa.074470	Cucumber (Gy14) v1	cgycpiB072
CSPI03G05850	CmaCh04G009180	Cucurbita maxima (Rimu)	cmacpiB710
CSPI03G05850	CmaCh16G008080	Cucurbita maxima (Rimu)	cmacpiB334
CSPI03G05850	CmoCh16G008630	Cucurbita moschata (Rifu)	cmocpiB326
CSPI03G05850	CmoCh04G009860	Cucurbita moschata (Rifu)	cmocpiB703
CSPI03G05850	Cp4.1LG14g00150	Cucurbita pepo (Zucchini)	cpecpiB218
CSPI03G05850	Cp4.1LG01g08270	Cucurbita pepo (Zucchini)	cpecpiB392
CSPI03G05850	CsGy3G005970	Cucumber (Gy14) v2	cgybcpiB110

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI03G05850	Cucurbita pepo (Zucchini)	cpecpiB783
CSPI03G05850	Cucumber (Gy14) v2	cgybcpiB020
CSPI03G05850	Silver-seed gourd	carcpiB0249
CSPI03G05850	Silver-seed gourd	carcpiB0696
CSPI03G05850	Silver-seed gourd	carcpiB0942
CSPI03G05850	Cucumber (Chinese Long) v3	cpicucB129
CSPI03G05850	Watermelon (97103) v2	cpiwmbB205
CSPI03G05850	Wax gourd	cpiwgoB218
CSPI03G05850	Wax gourd	cpiwgoB234
CSPI03G05850	Wild cucumber (PI 183967)	cpicpiB016
CSPI03G05850	Cucumber (Gy14) v1	cgycpiB173
CSPI03G05850	Cucurbita maxima (Rimu)	cmacpiB019
CSPI03G05850	Cucurbita moschata (Rifu)	cmocpiB010
CSPI03G05850	Cucumber (Chinese Long) v2	cpicuB103
CSPI03G05850	Watermelon (Charleston Gray)	cpiwcgB221
CSPI03G05850	Watermelon (97103) v1	cpiwmB213