CmoCh04G008850 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh04G008850
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	50S ribosomal protein L29
Location	Cmo_Chr04 : 4449129 .. 4451308 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTGGGCTTCTTCTTCGAACAAAAGCGCTGTGCTGTGACTGAGCGAAACCACACACTGACGGTGAAGATGATAAACCTTTCAATTGCTTCGCCTTCGAGCGTTTCGTTCCCTTCTAAATTTCTTAGCTCGACCTCCAAATCCTCCTTCAATGGCCGTCAAATCCGGTTCCCATTTTCGTTTCGCGTTCCTCCTAAAACAGCATCTACCGGAGGCCGCAATTCGTCGGTGGTAATGATGGCGAAGAGGGAGGAGGAGTTGAAGGAAATCAGAACGAAAACTACTGAGGAAATAAACGAAGAGGTCATCGATCTTAAGGGTGAACTTCTTATGCTTCGGCTTCAGAAATCAGCTCGCAATGAGTTTAAGTCCAGCGAATTCCGCCGCATGCGCAAACGGGTAATTTTCTCCCTTATTGATAGATTCTTAATCAACTTTGAGTTCTATTATAATGTGGCTTTTTTGTTCGTCTTTAATTTATAATCTATGCGAAGTATATTTTAAGTCGTACAGTCTCCCATTCTCCACATTTCTGCTTATTTTGTGCTAAATTTAATGGTCGGCTTGAAATTTTGGCTCATTTGTTTCCAATGGGGTTTTGTAGCTGTTGAATCTAAGATTATTGCCTATTATTTGCCGCCAAAATGAAAGACGAGTAGCAAATTAACGTATGAAAAGTAAAAAGAAAAAAGAACCTCGAACGATATGTTTCACCATGTTGGGAAAAGCTTAGAGAAGCTGCATTTGAAGGAAATAGAAAAACCAATGCAATTAGGGGGCCAGTTAGAGCTGCTCTGCAACTTAGAAATTCAATTAGAATCAAGAAAGGTAATCGAAATTGGGATTTCTGGGCATTAAAAACTTCGCATTCGACTAGTATTAACTCCAAATTTTGTATACGTTTAGCACCTGTCTTCAAAAAAACTCTTCAATGTCTTCCTGCTAACATTTTATCTAAGATTCCCAAAATTCCGGAAGCATGAATGAGCCTATAAATGTGGAAATGACAATTCCATAGAAGATGTTATTTGATAAACTAAACCTATTCTGATCACGAAGCATCACAATGTTGAATGTATAGAGAGAGCCATTTGCATTTGAACAATATGTAGCCTTCTCATGACTTTTGTATCAAAGTTCTTCCTGCTTAGTGCATTACATGGATGTCGGAATTGTTTGCTGGGCCTCTCACTGTAATATGCTTGTTCTATTTGTAAGACTTGCCATTCTCATAGTTTCGTCGTGACGAGTCTGAGGATTTAGGAAGCGAACTCTTTTCATTTATAGTTGAATTCCACACCTTCATGATAAGTTTAGATGCTCATAGTTACCCTCTTAAGGGTTGGTTCTGGATTCCAACTCGACAACTTACCGCTTAAAATCCTTCCTTACCGTCTAGCCTGCTCGAAAATTGGTAGTGTGGATCATGAATATGGGAGTGGGGCTTGATGATCAATATAGTATTGCAGAGATCGATTAATATATTTGCTGATGCAGGACAGTTTGGAAGTTTATATAGTATATGGGTCCTGTCTCCTTCTTGTTATTCTTTATCTCCACACACTTTCGGTTTTGCGACATTGTCGCTATACATCCATTTTTCTTCTTTTTCTCCTCTTTCTCCAAGTTATCAATCTTTTAACCTTGAACTCGTGGTTGGAATATATGCCTTAACTAATTGAGCTATGCTTAATTTGGGAGCTATACATCGAATATTTGGACTTAGCCCAACAATTTTGGTTTTGTTTCTCTTATACATCCATGAAACTTGGAGTTTTGTGCAGATTGCTCGGATGCTAACCGTGAAACGTGAAAGAGAGATTGAAGAGGGAGTGGGCAAAAGGCTGTCAAGAAAGCTAGACAGAAAGTGGAAGAGAAGTATTGTGGTCAGACCACCTCCATCTTTGAAGAAGTTGCGAGAGGAAGAAGCAGCCGCTGAAGAAGCTGAGAAATCTGCTTGATCCAATCAGATATACTCTCAACCAATATTGTGGCTTTATGAGTTTCTGATTTTTTTTTTTATTTTCCCGAAAAATTCTTATGTTGTACTTAGCTTATGCATAAATGGGAACATATTTTGAATAATTCTAATCTTCAAATTGAAAATTCTATTACTTATTCTTAGTTGATTCAAGAGATTGTGGGAAACTCCCATGAAGCATATTTTTTTATTAAGAAGCCTT

mRNA sequence

CTGGGCTTCTTCTTCGAACAAAAGCGCTGTGCTGTGACTGAGCGAAACCACACACTGACGGTGAAGATGATAAACCTTTCAATTGCTTCGCCTTCGAGCGTTTCGTTCCCTTCTAAATTTCTTAGCTCGACCTCCAAATCCTCCTTCAATGGCCGTCAAATCCGGTTCCCATTTTCGTTTCGCGTTCCTCCTAAAACAGCATCTACCGGAGGCCGCAATTCGTCGGTGGTAATGATGGCGAAGAGGGAGGAGGAGTTGAAGGAAATCAGAACGAAAACTACTGAGGAAATAAACGAAGAGGTCATCGATCTTAAGGGTGAACTTCTTATGCTTCGGCTTCAGAAATCAGCTCGCAATGAGTTTAAGTCCAGCGAATTCCGCCGCATGCGCAAACGGATTGCTCGGATGCTAACCGTGAAACGTGAAAGAGAGATTGAAGAGGGAGTGGGCAAAAGGCTGTCAAGAAAGCTAGACAGAAAGTGGAAGAGAAGTATTGTGGTCAGACCACCTCCATCTTTGAAGAAGTTGCGAGAGGAAGAAGCAGCCGCTGAAGAAGCTGAGAAATCTGCTTGATCCAATCAGATATACTCTCAACCAATATTGTGGCTTTATGAGTTTCTGATTTTTTTTTTTATTTTCCCGAAAAATTCTTATGTTGTACTTAGCTTATGCATAAATGGGAACATATTTTGAATAATTCTAATCTTCAAATTGAAAATTCTATTACTTATTCTTAGTTGATTCAAGAGATTGTGGGAAACTCCCATGAAGCATATTTTTTTATTAAGAAGCCTT

Coding sequence (CDS)

ATGATAAACCTTTCAATTGCTTCGCCTTCGAGCGTTTCGTTCCCTTCTAAATTTCTTAGCTCGACCTCCAAATCCTCCTTCAATGGCCGTCAAATCCGGTTCCCATTTTCGTTTCGCGTTCCTCCTAAAACAGCATCTACCGGAGGCCGCAATTCGTCGGTGGTAATGATGGCGAAGAGGGAGGAGGAGTTGAAGGAAATCAGAACGAAAACTACTGAGGAAATAAACGAAGAGGTCATCGATCTTAAGGGTGAACTTCTTATGCTTCGGCTTCAGAAATCAGCTCGCAATGAGTTTAAGTCCAGCGAATTCCGCCGCATGCGCAAACGGATTGCTCGGATGCTAACCGTGAAACGTGAAAGAGAGATTGAAGAGGGAGTGGGCAAAAGGCTGTCAAGAAAGCTAGACAGAAAGTGGAAGAGAAGTATTGTGGTCAGACCACCTCCATCTTTGAAGAAGTTGCGAGAGGAAGAAGCAGCCGCTGAAGAAGCTGAGAAATCTGCTTGA

Homology

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BLAST of CmoCh04G008850 vs. Swiss-Prot
Match: RK29_ARATH (50S ribosomal protein L29, chloroplastic OS=Arabidopsis thaliana GN=RPL29 PE=1 SV=1)

HSP 1 Score: 185.3 bits (469), Expect = 5.6e-46
Identity = 113/168 (67.26%), Postives = 137/168 (81.55%), Query Frame = 1


Query: 1   MINLSIASPSSVS-FPSKFLSSTS-KSSFNGRQIRFPFSFRVPPK-TASTGGRNSSVVMM 60
           M++LSIA+P + + F     S+TS  SSF+G +I+   S RVP   T S+     SVVMM
Sbjct: 1   MLSLSIATPGTAAIFRRGTASATSTSSSFHGVRIQHQVSARVPAAATISSSSPKPSVVMM 60

Query: 61  AKREEELKEIRTKTTEEINEEVIDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTV 120
           +KRE ELKEIR+KTTE++ EEV+DLKGEL MLRLQKSARNEFKSS+FRRM+K++ARMLTV
Sbjct: 61  SKREAELKEIRSKTTEQLQEEVVDLKGELFMLRLQKSARNEFKSSDFRRMKKQVARMLTV 120

Query: 121 KREREIEEGVGKRLSRKLDRKWKRSIVVRPPPSLKKLREEEAAAEEAE 166
           KREREI+EG+ KRLSRKLDR+WK+SIV RPPPSLKKL+EEEAA E AE
Sbjct: 121 KREREIKEGIKKRLSRKLDRQWKKSIVPRPPPSLKKLQEEEAAEEAAE 168

[Close]

BLAST of CmoCh04G008850 vs. Swiss-Prot
Match: RK29_MAIZE (50S ribosomal protein L29, chloroplastic OS=Zea mays GN=RPL29 PE=2 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 2.6e-35
Identity = 80/108 (74.07%), Postives = 97/108 (89.81%), Query Frame = 1


Query: 50  RNSSVVMMAKREEELKEIRTKTTEEINEEVIDLKGELLMLRLQKSARNEFKSSEFRRMRK 109
           R +++V MAKRE+EL+EIR  TTE++ EEV+DLKGEL +LRL++SAR EFK+SEF RMRK
Sbjct: 54  RAAAMVAMAKREQELEEIRAMTTEQMEEEVVDLKGELFLLRLKRSARQEFKNSEFSRMRK 113

Query: 110 RIARMLTVKREREIEEGVGKRLSRKLDRKWKRSIVVRPPPSLKKLREE 158
           RIARMLTVKREREIE+G+ KRLSRKLDRKWK+SIVVRPPPSL+  +EE
Sbjct: 114 RIARMLTVKREREIEQGINKRLSRKLDRKWKQSIVVRPPPSLRGNKEE 161

[Close]

BLAST of CmoCh04G008850 vs. TrEMBL
Match: A0A0A0KVL7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G095600 PE=3 SV=1)

HSP 1 Score: 268.5 bits (685), Expect = 5.6e-69
Identity = 153/170 (90.00%), Postives = 164/170 (96.47%), Query Frame = 1


Query: 1   MINLSIAS-PSSVSFPSKFLSSTSKSSFNGRQIRFPFSFRVPPKTASTG-GRNSSVVMMA 60
           MINLSIAS PS++  PSKFL+STSKSSFN  QIRFPFSFR+PPKTA+TG GRNSSVVMMA
Sbjct: 1   MINLSIASLPSTLPIPSKFLNSTSKSSFNALQIRFPFSFRLPPKTATTGRGRNSSVVMMA 60

Query: 61  KREEELKEIRTKTTEEINEEVIDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVK 120
           KRE+ELK+IR+KTTEEINEEVIDLKGELLMLRLQKSARNEFKSSEFRRMRKRI+RMLTV+
Sbjct: 61  KREDELKDIRSKTTEEINEEVIDLKGELLMLRLQKSARNEFKSSEFRRMRKRISRMLTVR 120

Query: 121 REREIEEGVGKRLSRKLDRKWKRSIVVRPPPSLKKLREEEAAAEEAEKSA 169
           REREIEEGVGKRLSRKLDRKWK+SIVVRPPPSLKKLREEEAAAEEAEKSA
Sbjct: 121 REREIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREEEAAAEEAEKSA 170

[Close]

BLAST of CmoCh04G008850 vs. TrEMBL
Match: V4SW89_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10026623mg PE=3 SV=1)

HSP 1 Score: 212.6 bits (540), Expect = 3.7e-52
Identity = 126/170 (74.12%), Postives = 147/170 (86.47%), Query Frame = 1


Query: 2   INLSIASPSSVSFPSKFLSSTSKSSFNGRQIRFPFSFRVPPK--TASTGGRNSS-VVMMA 61
           ++LSIAS ++++FP++  S   KS+FNG QIR  +  R P +  T+S+G R SS VVMMA
Sbjct: 3   MSLSIASTTTITFPTEPFSKIPKSTFNGIQIRQSWPIRTPLRFATSSSGSRGSSTVVMMA 62

Query: 62  KREEELKEIRTKTTEEINEEVIDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVK 121
           KREEE+KEIR KTTEEINEEV+DLKGEL MLRLQKS RNEFKSSEFRRMR+RIARMLTVK
Sbjct: 63  KREEEMKEIRAKTTEEINEEVVDLKGELFMLRLQKSVRNEFKSSEFRRMRRRIARMLTVK 122

Query: 122 REREIEEGVGKRLSRKLDRKWKRSIVVRPPPSLKKLREEEAAAEEAEKSA 169
           RERE+EEG+ KRLSRKLDR+WK+SIVVRPPPSLKKL+EEEAAA EAEKSA
Sbjct: 123 RERELEEGINKRLSRKLDRQWKKSIVVRPPPSLKKLQEEEAAA-EAEKSA 171

[Close]

BLAST of CmoCh04G008850 vs. TrEMBL
Match: A0A067ERN3_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g030809mg PE=3 SV=1)

HSP 1 Score: 212.6 bits (540), Expect = 3.7e-52
Identity = 126/170 (74.12%), Postives = 147/170 (86.47%), Query Frame = 1


Query: 2   INLSIASPSSVSFPSKFLSSTSKSSFNGRQIRFPFSFRVPPK--TASTGGRNSS-VVMMA 61
           ++LSIAS ++++FP++  S   KS+FNG QIR  +  R P +  T+S+G R SS VVMMA
Sbjct: 3   MSLSIASTTTITFPTEPFSKIPKSTFNGVQIRQSWPIRTPLRFATSSSGSRGSSAVVMMA 62

Query: 62  KREEELKEIRTKTTEEINEEVIDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVK 121
           KREEE+KEIR KTTEEINEEV+DLKGEL MLRLQKS RNEFKSSEFRRMR+RIARMLTVK
Sbjct: 63  KREEEMKEIRAKTTEEINEEVVDLKGELFMLRLQKSVRNEFKSSEFRRMRRRIARMLTVK 122

Query: 122 REREIEEGVGKRLSRKLDRKWKRSIVVRPPPSLKKLREEEAAAEEAEKSA 169
           RERE+EEG+ KRLSRKLDR+WK+SIVVRPPPSLKKL+EEEAAA EAEKSA
Sbjct: 123 RERELEEGINKRLSRKLDRQWKKSIVVRPPPSLKKLQEEEAAA-EAEKSA 171

[Close]

BLAST of CmoCh04G008850 vs. TrEMBL
Match: F6HWM0_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_07s0141g00200 PE=3 SV=1)

HSP 1 Score: 208.4 bits (529), Expect = 6.9e-51
Identity = 126/169 (74.56%), Postives = 140/169 (82.84%), Query Frame = 1


Query: 1   MINLSIASPSSVSFPSKFLSSTSKSSFNGRQIRFPF--SFRVPPKTASTGGRNSSVVMMA 60
           M +LSIASPSS+  P K  S+  KSSFNG +I  P+  SFR P  +       SSVVMMA
Sbjct: 1   MFSLSIASPSSLKIPPKTTSTFPKSSFNGIRIPTPYKPSFRSPSSS-------SSVVMMA 60

Query: 61  KREEELKEIRTKTTEEINEEVIDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVK 120
           KREEELKEIR KTTEE+NEE++DLKGELLMLRLQKS RNEFK SEF RMRKR+ARMLTVK
Sbjct: 61  KREEELKEIRAKTTEELNEEIVDLKGELLMLRLQKSVRNEFKPSEFGRMRKRVARMLTVK 120

Query: 121 REREIEEGVGKRLSRKLDRKWKRSIVVRPPPSLKKLREEEAAAEEAEKS 168
           REREIEEG+ KRLSRKLDR+WK+SIVVRPPPSLKKL+EEEAAA EAEKS
Sbjct: 121 REREIEEGINKRLSRKLDRQWKKSIVVRPPPSLKKLQEEEAAA-EAEKS 161

[Close]

BLAST of CmoCh04G008850 vs. TrEMBL
Match: A0A061DI09_THECC (Ribosomal L29 family protein OS=Theobroma cacao GN=TCM_001105 PE=3 SV=1)

HSP 1 Score: 207.6 bits (527), Expect = 1.2e-50
Identity = 124/170 (72.94%), Postives = 144/170 (84.71%), Query Frame = 1


Query: 1   MINLSIASPSSVSFPSKFLSSTSKSSFNGRQIRFPFSFRVPPKTAS--TGGRNSSVVMMA 60
           M++LS+ASP++V+FP K  SS  K+SFNG +I+      +P +T S      +SSVVMMA
Sbjct: 50  MLSLSVASPTTVTFPPKPKSSIPKTSFNGVRIQHLCPRPLPSQTTSFRKPSASSSVVMMA 109

Query: 61  KREEELKEIRTKTTEEINEEVIDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVK 120
           KREEE+KEIR KTTEEINEEV++LKGEL MLRLQKS RNEFKSSEFRRMRKRIARMLTVK
Sbjct: 110 KREEEMKEIRAKTTEEINEEVVELKGELFMLRLQKSVRNEFKSSEFRRMRKRIARMLTVK 169

Query: 121 REREIEEGVGKRLSRKLDRKWKRSIVVRPPPSLKKLREEEAAAEEAEKSA 169
           REREIEEG+ KRLSRKLDR+WK+SIVV+PPPSL KLREEE AAE+AEKSA
Sbjct: 170 REREIEEGINKRLSRKLDRRWKKSIVVKPPPSLIKLREEE-AAEQAEKSA 218

[Close]

BLAST of CmoCh04G008850 vs. TAIR10
Match: AT5G65220.1 (AT5G65220.1 Ribosomal L29 family protein )

HSP 1 Score: 185.3 bits (469), Expect = 3.2e-47
Identity = 113/168 (67.26%), Postives = 137/168 (81.55%), Query Frame = 1


Query: 1   MINLSIASPSSVS-FPSKFLSSTS-KSSFNGRQIRFPFSFRVPPK-TASTGGRNSSVVMM 60
           M++LSIA+P + + F     S+TS  SSF+G +I+   S RVP   T S+     SVVMM
Sbjct: 1   MLSLSIATPGTAAIFRRGTASATSTSSSFHGVRIQHQVSARVPAAATISSSSPKPSVVMM 60

Query: 61  AKREEELKEIRTKTTEEINEEVIDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTV 120
           +KRE ELKEIR+KTTE++ EEV+DLKGEL MLRLQKSARNEFKSS+FRRM+K++ARMLTV
Sbjct: 61  SKREAELKEIRSKTTEQLQEEVVDLKGELFMLRLQKSARNEFKSSDFRRMKKQVARMLTV 120

Query: 121 KREREIEEGVGKRLSRKLDRKWKRSIVVRPPPSLKKLREEEAAAEEAE 166
           KREREI+EG+ KRLSRKLDR+WK+SIV RPPPSLKKL+EEEAA E AE
Sbjct: 121 KREREIKEGIKKRLSRKLDRQWKKSIVPRPPPSLKKLQEEEAAEEAAE 168

[Close]

BLAST of CmoCh04G008850 vs. NCBI nr
Match: gi|449438829|ref|XP_004137190.1| (PREDICTED: 50S ribosomal protein L29, chloroplastic [Cucumis sativus])

HSP 1 Score: 268.5 bits (685), Expect = 8.1e-69
Identity = 153/170 (90.00%), Postives = 164/170 (96.47%), Query Frame = 1


Query: 1   MINLSIAS-PSSVSFPSKFLSSTSKSSFNGRQIRFPFSFRVPPKTASTG-GRNSSVVMMA 60
           MINLSIAS PS++  PSKFL+STSKSSFN  QIRFPFSFR+PPKTA+TG GRNSSVVMMA
Sbjct: 1   MINLSIASLPSTLPIPSKFLNSTSKSSFNALQIRFPFSFRLPPKTATTGRGRNSSVVMMA 60

Query: 61  KREEELKEIRTKTTEEINEEVIDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVK 120
           KRE+ELK+IR+KTTEEINEEVIDLKGELLMLRLQKSARNEFKSSEFRRMRKRI+RMLTV+
Sbjct: 61  KREDELKDIRSKTTEEINEEVIDLKGELLMLRLQKSARNEFKSSEFRRMRKRISRMLTVR 120

Query: 121 REREIEEGVGKRLSRKLDRKWKRSIVVRPPPSLKKLREEEAAAEEAEKSA 169
           REREIEEGVGKRLSRKLDRKWK+SIVVRPPPSLKKLREEEAAAEEAEKSA
Sbjct: 121 REREIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREEEAAAEEAEKSA 170

[Close]

BLAST of CmoCh04G008850 vs. NCBI nr
Match: gi|659111132|ref|XP_008455595.1| (PREDICTED: 50S ribosomal protein L29, chloroplastic [Cucumis melo])

HSP 1 Score: 266.9 bits (681), Expect = 2.3e-68
Identity = 152/170 (89.41%), Postives = 162/170 (95.29%), Query Frame = 1


Query: 1   MINLSIAS-PSSVSFPSKFLSSTSKSSFNGRQIRFPFSFRVPPKTASTG-GRNSSVVMMA 60
           MINLS+AS PS++  PSKFL+STSKS FNG QIRFPFSF VPPKTA+TG GRNSSVVMMA
Sbjct: 1   MINLSVASLPSALPIPSKFLNSTSKSFFNGLQIRFPFSFCVPPKTATTGGGRNSSVVMMA 60

Query: 61  KREEELKEIRTKTTEEINEEVIDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVK 120
           KREEELK+IR KTTEEINEEV+DLKGELLMLRLQKSARNEFKSSEFRRMRKRI+RMLTVK
Sbjct: 61  KREEELKDIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFKSSEFRRMRKRISRMLTVK 120

Query: 121 REREIEEGVGKRLSRKLDRKWKRSIVVRPPPSLKKLREEEAAAEEAEKSA 169
           REREIEEGVGKR+SRKLDRKWK+SIVVRPPPSLKKLREEEAAAEEAEKSA
Sbjct: 121 REREIEEGVGKRMSRKLDRKWKKSIVVRPPPSLKKLREEEAAAEEAEKSA 170

[Close]

BLAST of CmoCh04G008850 vs. NCBI nr
Match: gi|694437160|ref|XP_009345632.1| (PREDICTED: 50S ribosomal protein L29, chloroplastic-like [Pyrus x bretschneideri])

HSP 1 Score: 215.3 bits (547), Expect = 8.1e-53
Identity = 126/169 (74.56%), Postives = 145/169 (85.80%), Query Frame = 1


Query: 4   LSIASPSSVSFPSKFLSSTSKSSFNGRQIRF---PFSFRVPPKTASTG-GRNSSVVMMAK 63
           +SIA PS+V+FPSK LS  SKSSFNG +++        R+P +++      +SSVVMMAK
Sbjct: 5   ISIAPPSTVTFPSKLLSPVSKSSFNGMRVQRLCPNIGVRLPTESSRRPCSPSSSVVMMAK 64

Query: 64  REEELKEIRTKTTEEINEEVIDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVKR 123
           REEE+KEIRTKTTEEINEEV+DLKGEL MLRLQKSARNEF SSEFRRMRKRIAR+LTVKR
Sbjct: 65  REEEMKEIRTKTTEEINEEVVDLKGELFMLRLQKSARNEFTSSEFRRMRKRIARLLTVKR 124

Query: 124 EREIEEGVGKRLSRKLDRKWKRSIVVRPPPSLKKLREEEAAAEEAEKSA 169
           EREIEEG+GKRLSRK DR+WK+SIVVRPPPSLKKL+EEEAAAE AEK+A
Sbjct: 125 EREIEEGIGKRLSRKFDRQWKKSIVVRPPPSLKKLQEEEAAAEAAEKAA 173

[Close]

BLAST of CmoCh04G008850 vs. NCBI nr
Match: gi|729450197|ref|XP_010523326.1| (PREDICTED: 50S ribosomal protein L29, chloroplastic [Tarenaya hassleriana])

HSP 1 Score: 214.5 bits (545), Expect = 1.4e-52
Identity = 128/170 (75.29%), Postives = 144/170 (84.71%), Query Frame = 1


Query: 1   MINLSIASPSSVS-FPSKFLSSTS-KSSFNGRQIRFPFSFRVPPKTASTGGRNSSVVMMA 60
           M++ SIA PS  + FP   +S TS  SSF+G +IR     RVP  T S+   +++VVMMA
Sbjct: 1   MLSFSIAPPSMAAVFPRGSVSGTSTSSSFHGVRIRHAVPVRVPAATISSRKSSATVVMMA 60

Query: 61  KREEELKEIRTKTTEEINEEVIDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVK 120
           KREEELK IR KTT+EINEEV+DLKGEL MLRLQKSARNEFKSSEFRRMRKR+ARMLTVK
Sbjct: 61  KREEELKAIRAKTTDEINEEVVDLKGELFMLRLQKSARNEFKSSEFRRMRKRVARMLTVK 120

Query: 121 REREIEEGVGKRLSRKLDRKWKRSIVVRPPPSLKKLREEEAAAEEAEKSA 169
           REREIEEGVGKRLSRKLDR+WK+SIVVRPPPSLKKL+EEEAAAEEAEKSA
Sbjct: 121 REREIEEGVGKRLSRKLDRQWKKSIVVRPPPSLKKLQEEEAAAEEAEKSA 170

[Close]

BLAST of CmoCh04G008850 vs. NCBI nr
Match: gi|641837594|gb|KDO56545.1| (hypothetical protein CISIN_1g030809mg [Citrus sinensis])

HSP 1 Score: 212.6 bits (540), Expect = 5.2e-52
Identity = 126/170 (74.12%), Postives = 147/170 (86.47%), Query Frame = 1


Query: 2   INLSIASPSSVSFPSKFLSSTSKSSFNGRQIRFPFSFRVPPK--TASTGGRNSS-VVMMA 61
           ++LSIAS ++++FP++  S   KS+FNG QIR  +  R P +  T+S+G R SS VVMMA
Sbjct: 3   MSLSIASTTTITFPTEPFSKIPKSTFNGVQIRQSWPIRTPLRFATSSSGSRGSSAVVMMA 62

Query: 62  KREEELKEIRTKTTEEINEEVIDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVK 121
           KREEE+KEIR KTTEEINEEV+DLKGEL MLRLQKS RNEFKSSEFRRMR+RIARMLTVK
Sbjct: 63  KREEEMKEIRAKTTEEINEEVVDLKGELFMLRLQKSVRNEFKSSEFRRMRRRIARMLTVK 122

Query: 122 REREIEEGVGKRLSRKLDRKWKRSIVVRPPPSLKKLREEEAAAEEAEKSA 169
           RERE+EEG+ KRLSRKLDR+WK+SIVVRPPPSLKKL+EEEAAA EAEKSA
Sbjct: 123 RERELEEGINKRLSRKLDRQWKKSIVVRPPPSLKKLQEEEAAA-EAEKSA 171

The following BLAST results are available for this feature:

BLAST of CmoCh04G008850 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RK29_ARATH	5.6e-46	67.26	50S ribosomal protein L29, chloroplastic OS=Arabidopsis thaliana GN=RPL29 PE=1 S...	[more]
RK29_MAIZE	2.6e-35	74.07	50S ribosomal protein L29, chloroplastic OS=Zea mays GN=RPL29 PE=2 SV=1	[more]

BLAST of CmoCh04G008850 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KVL7_CUCSA	5.6e-69	90.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G095600 PE=3 SV=1	[more]
V4SW89_9ROSI	3.7e-52	74.12	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10026623mg PE=3 SV=1	[more]
A0A067ERN3_CITSI	3.7e-52	74.12	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g030809mg PE=3 SV=1	[more]
F6HWM0_VITVI	6.9e-51	74.56	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_07s0141g00200 PE=3 SV=...	[more]
A0A061DI09_THECC	1.2e-50	72.94	Ribosomal L29 family protein OS=Theobroma cacao GN=TCM_001105 PE=3 SV=1	[more]

BLAST of CmoCh04G008850 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G65220.1	3.2e-47	67.26	Ribosomal L29 family protein	[more]

BLAST of CmoCh04G008850 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449438829\|ref\|XP_004137190.1\|	8.1e-69	90.00	PREDICTED: 50S ribosomal protein L29, chloroplastic [Cucumis sativus]	[more]
gi\|659111132\|ref\|XP_008455595.1\|	2.3e-68	89.41	PREDICTED: 50S ribosomal protein L29, chloroplastic [Cucumis melo]	[more]
gi\|694437160\|ref\|XP_009345632.1\|	8.1e-53	74.56	PREDICTED: 50S ribosomal protein L29, chloroplastic-like [Pyrus x bretschneideri...	[more]
gi\|729450197\|ref\|XP_010523326.1\|	1.4e-52	75.29	PREDICTED: 50S ribosomal protein L29, chloroplastic [Tarenaya hassleriana]	[more]
gi\|641837594\|gb\|KDO56545.1\|	5.2e-52	74.12	hypothetical protein CISIN_1g030809mg [Citrus sinensis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001854	Ribosomal_L29/L35

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome

Vocabulary: **Cellular Component**
Term	Definition
GO:0005622	intracellular
GO:0005840	ribosome

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006354	DNA-templated transcription, elongation
biological_process	GO:0045893	positive regulation of transcription, DNA-templated
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0042793	transcription from plastid promoter
biological_process	GO:0006412	translation
cellular_component	GO:0009941	chloroplast envelope
cellular_component	GO:0009570	chloroplast stroma
cellular_component	GO:0009295	nucleoid
cellular_component	GO:0005840	ribosome
cellular_component	GO:0005622	intracellular
cellular_component	GO:0022625	cytosolic large ribosomal subunit
molecular_function	GO:0003735	structural constituent of ribosome

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh04G008850.1	CmoCh04G008850.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001854	Ribosomal protein L29	GENE3D	G3DSA:1.10.287.310		coord: 64..125 score: 3.2
IPR001854	Ribosomal protein L29	HAMAP	MF_00374	Ribosomal_L29	coord: 62..121 score: 1
IPR001854	Ribosomal protein L29	PFAM	PF00831	Ribosomal_L29	coord: 65..121 score: 7.0
IPR001854	Ribosomal protein L29	TIGRFAMs	TIGR00012	TIGR00012	coord: 66..121 score: 3.1
IPR001854	Ribosomal protein L29	unknown	SSF46561	Ribosomal protein L29 (L29p)	coord: 64..124 score: 3.92
None	No IPR available	unknown	Coil	Coil	coord: 151..168 scor
None	No IPR available	PANTHER	PTHR10916	60S RIBOSOMAL PROTEIN L35/50S RIBOSOMAL PROTEIN L29	coord: 3..164 score: 1.4
None	No IPR available	PANTHER	PTHR10916:SF0	50S RIBOSOMAL PROTEIN L29, CHLOROPLASTIC	coord: 3..164 score: 1.4

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh04G008850	Cucsa.273030	Cucumber (Gy14) v1	cgycmoB0758
CmoCh04G008850	CmaCh16G007170	Cucurbita maxima (Rimu)	cmacmoB337
CmoCh04G008850	CmaCh04G008280	Cucurbita maxima (Rimu)	cmacmoB728
CmoCh04G008850	Cla004837	Watermelon (97103) v1	cmowmB649
CmoCh04G008850	Csa4G095600	Cucumber (Chinese Long) v2	cmocuB703
CmoCh04G008850	MELO3C018954	Melon (DHL92) v3.5.1	cmomeB690
CmoCh04G008850	ClCG10G008830	Watermelon (Charleston Gray)	cmowcgB616
CmoCh04G008850	CSPI04G08690	Wild cucumber (PI 183967)	cmocpiB711
CmoCh04G008850	Lsi03G009220	Bottle gourd (USVL1VR-Ls)	cmolsiB651
CmoCh04G008850	Cp4.1LG14g01040	Cucurbita pepo (Zucchini)	cmocpeB667
CmoCh04G008850	Cp4.1LG01g09230	Cucurbita pepo (Zucchini)	cmocpeB673
CmoCh04G008850	CsaV3_4G008900	Cucumber (Chinese Long) v3	cmocucB0831
CmoCh04G008850	Cla97C10G192140	Watermelon (97103) v2	cmowmbB689
CmoCh04G008850	Bhi11G000826	Wax gourd	cmowgoB0818
CmoCh04G008850	CsGy4G008520	Cucumber (Gy14) v2	cgybcmoB519
CmoCh04G008850	Carg05831	Silver-seed gourd	carcmoB1371
CmoCh04G008850	Carg14228	Silver-seed gourd	carcmoB1259

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh04G008850	CmoCh16G007730	Cucurbita moschata (Rifu)	cmocmoB285

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh04G008850	Cucurbita moschata (Rifu)	cmocmoB451
CmoCh04G008850	Cucumber (Gy14) v1	cgycmoB0229
CmoCh04G008850	Wild cucumber (PI 183967)	cmocpiB775
CmoCh04G008850	Cucumber (Chinese Long) v2	cmocuB768
CmoCh04G008850	Melon (DHL92) v3.5.1	cmomeB702
CmoCh04G008850	Watermelon (Charleston Gray)	cmowcgB641
CmoCh04G008850	Watermelon (97103) v1	cmowmB711
CmoCh04G008850	Cucurbita pepo (Zucchini)	cmocpeB655
CmoCh04G008850	Bottle gourd (USVL1VR-Ls)	cmolsiB628
CmoCh04G008850	Cucumber (Gy14) v2	cgybcmoB824
CmoCh04G008850	Melon (DHL92) v3.6.1	cmomedB784
CmoCh04G008850	Melon (DHL92) v3.6.1	cmomedB801
CmoCh04G008850	Cucumber (Chinese Long) v3	cmocucB0909
CmoCh04G008850	Watermelon (97103) v2	cmowmbB682