ClCG10G008830 (gene) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG10G008830
Type	gene
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	50S ribosomal protein L29
Location	CG_Chr10 : 19423117 .. 19425830 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATAGCCCGCTGAGTTCTTCATCTTCTTCCTCAAGCGCTGTGGCTGAGCGAAACCACACTGTCCACAAACTCTGAAGATGATAAACCTTTCAATTGCTTCGCCTTCGACCGTTTCTATCCCTTCAAAAGTTCTCTACTCGACCTCCAAATCCTCCTTCAATGGCCTTCAAATCCGTTTCCCATTTTCGTTTCGCGTTCCTCCTAAAACAGCATGTACTGGAGGTCGTAATTCCCCGGTGGTAATGATGGCGAAGAGGGAGGAGGAATTGAAGGAAATCAGAGCGAAAACTACTGAGGAAATAAATGAAGAGGTCGTCGATCTTAAGGGTGAACTTCTTATGCTTCGGCTTCAAAAATCTGCCCGCAATGAGTTTACGTCTAGCGAATTCCGCCGCATGCGCAAACGGGTACTTCTTTTCCTCCTTGATGGATTCTTAGTTAATTTTGAGTTCAATAGAAATGTGGCTATTATGTTCGTCTCAAACATATACGTCTTACCGTCTACTATCCTCCACATTTTTGCTTATCTGGTGCTAAATTTATTGTTTGGATTAAATTTTGGAGCTCAATGGTTAGTAATGGGGATTTGTGGCTGTTGGTATCTAAGATTATTGGCTATTGTTTGCTGTCAAAAGAGAAGAAATGTAGGAATAAATAAAATCTGCGGAGTAAAATGATTCTAGAACCATATATTTTTGTGGGAATCAAGTGAAGATGCAGATTTGAGTTCACAATCCAGAGATATTAACCGAAACATTATTTCACCATGTTGGGAAATTGTTACAAAAGTTGCATTTAGAGGAAGATAGAGCCAGTTGGAATCAGAAAATGTAATTGAAATTGGGATTTCTAACGCTAAGTTCATATAACTCCAAATATAACTCATTAGATACAGCTCCCTCATAGATTTTGCAATTTTGATAAGGTTAGCATCGTCTTCTAAAGACTCTTAATGTCTTCATGCTAACATTTTGTTTAAGATTCCCAAAACGCCTGAAGCTTGAATGGGTCTATGAATTTGGAAATCATAATTCCATTCGGGTTCAGAACAACTTGTCTTTTTATATGAAGTTGGTTAATGGGAAAGCTCAACCTATTCTGATCCATGGAAGCATCACAATTTTTAATGCATAAAAGAGAGATTTAGCCTTCTCATGACTTTTATACCAAAATGTCTGTATGCTTGGTGCTTAGTATGCATATCGGAATTATCTGCTGGGGTTCTCTCTGTTACCCCCCATTCATGAGATCGAAAAGATCGTCAAGATTTCGTGATCTGCTGCCAAACCTATTCCTTCCACTATTTTAGTAGGGTAATATCCCAGCTATAATAGCAATAGGATATAGGTGAGACTAGAGACTGATGGGTCTTAGCGATTCCCTTCCCATAAAAAGGATCATTGCCAACATATTCTCTAGCAAAAGAAATGACCTAGACTAGACCTCTTCTATCGCATCAAGAGGAAATCCAATCCTGCATTTGAGAAAGTTTAGCTATGCCGATAACTCTTTCAAAGGTGGCTCCTGATTAATTGTTTGATTTCCAATAGAAAGAGTCTGAGACTTCCTTGAGTGTAGTGAACCAAAGCCTTGAATGATGAGAAGTTGAATAGTTTATTTACACATTATAAATTTAGCAAGACTGGCAGTTTTTTAGAACTCGCTTATGATCATGATGGAGTTTAACACTGTAATAGTGGTAAGACATTTTGCATCTATGGTCTAATCCCATGGCTTCATGATAACGTCTTGAGTTGTTTGTAGTTACCCTCCAAAGTCTTGGTTCAAAGCCTCCAACTAGGTAACTTAGTACTTGGATTTTGTCTCCGGTGTCTCCTTTAATAAGGATTATTCAATGAGGCCGCCACAATGTAGTTGCTGTTAATAACCAATTCAACGAGATCCAGTAATCTGCAGTCCCTTAATATCCACTTCATATAAATTTGAACTATTTCTCCCTCTACATCCAAAAGTGAAAAAGTAGGGGTCCCACTAAATAATTTCTCCACCATCGAACCGGGTGAAGCCTTCTTGGAGCTTAGTGGTGTGGGTCATGAACATAGGATTGGGACTTGATAATCCCAGTTCTCAATAAAGTGGGTGGAAAATTCTCAGCAACACAATATTGCAGAGATCGATTGATGTATATGCAGTAGTATGCTGACGTGGGACAATCAGGAAGTTTAATTATATATTGCTTCTCTTCTCTTTAGTATTATTATTTATCTTCACATATTTCAGATTGCAACAACTTGGCCAATACATCCAATGTTTGGACTTGCCTAACAACTTTCTTTTCGTCATGGAGCATCAAACGATTAATGTAACTTGGAGTTTTAAACCATTTGTTGTTGTTGTTTGTCCGATGACAGATTGCTCGGATGCTAACAGTAAAACGCGAAAGAGAGATTGAAGAGGGAGTGGGCAAAAGGCTGTCAAGAAAATTAGATAGAAAGTGGAAGAAAAGTATTGTTGTCAGACCACCTCCATCGCTGAAGAAGTTGCGAGAGGAAGAAGCAGCAGCTGAAGAAGCTGAGAAATCTGCTTGATCCAATCTCAGATAAGCTCTCATCCAATGTTGTAGCTTTATGAGTTTGAAGTTGTTGAGAATGCTATTTAAACAACTTTTTAGAAAATATTTTTTCTTTCTCTCTAAAAATTCTGATTCTTGTACTTAGCTTATGCACAAATGGAAATAGATTTCGAGTGGATCAT

mRNA sequence

ATAGCCCGCTGAGTTCTTCATCTTCTTCCTCAAGCGCTGTGGCTGAGCGAAACCACACTGTCCACAAACTCTGAAGATGATAAACCTTTCAATTGCTTCGCCTTCGACCGTTTCTATCCCTTCAAAAGTTCTCTACTCGACCTCCAAATCCTCCTTCAATGGCCTTCAAATCCGTTTCCCATTTTCGTTTCGCGTTCCTCCTAAAACAGCATGTACTGGAGGTCGTAATTCCCCGGTGGTAATGATGGCGAAGAGGGAGGAGGAATTGAAGGAAATCAGAGCGAAAACTACTGAGGAAATAAATGAAGAGGTCGTCGATCTTAAGGGTGAACTTCTTATGCTTCGGCTTCAAAAATCTGCCCGCAATGAGTTTACGTCTAGCGAATTCCGCCGCATGCGCAAACGGATTGCTCGGATGCTAACAGTAAAACGCGAAAGAGAGATTGAAGAGGGAGTGGGCAAAAGGCTGTCAAGAAAATTAGATAGAAAGTGGAAGAAAAGTATTGTTGTCAGACCACCTCCATCGCTGAAGAAGTTGCGAGAGGAAGAAGCAGCAGCTGAAGAAGCTGAGAAATCTGCTTGATCCAATCTCAGATAAGCTCTCATCCAATGTTGTAGCTTTATGAGTTTGAAGTTGTTGAGAATGCTATTTAAACAACTTTTTAGAAAATATTTTTTCTTTCTCTCTAAAAATTCTGATTCTTGTACTTAGCTTATGCACAAATGGAAATAGATTTCGAGTGGATCAT

Coding sequence (CDS)

ATGATAAACCTTTCAATTGCTTCGCCTTCGACCGTTTCTATCCCTTCAAAAGTTCTCTACTCGACCTCCAAATCCTCCTTCAATGGCCTTCAAATCCGTTTCCCATTTTCGTTTCGCGTTCCTCCTAAAACAGCATGTACTGGAGGTCGTAATTCCCCGGTGGTAATGATGGCGAAGAGGGAGGAGGAATTGAAGGAAATCAGAGCGAAAACTACTGAGGAAATAAATGAAGAGGTCGTCGATCTTAAGGGTGAACTTCTTATGCTTCGGCTTCAAAAATCTGCCCGCAATGAGTTTACGTCTAGCGAATTCCGCCGCATGCGCAAACGGATTGCTCGGATGCTAACAGTAAAACGCGAAAGAGAGATTGAAGAGGGAGTGGGCAAAAGGCTGTCAAGAAAATTAGATAGAAAGTGGAAGAAAAGTATTGTTGTCAGACCACCTCCATCGCTGAAGAAGTTGCGAGAGGAAGAAGCAGCAGCTGAAGAAGCTGAGAAATCTGCTTGA

Protein sequence

MINLSIASPSTVSIPSKVLYSTSKSSFNGLQIRFPFSFRVPPKTACTGGRNSPVVMMAKREEELKEIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFTSSEFRRMRKRIARMLTVKREREIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREEEAAAEEAEKSA

Homology

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BLAST of ClCG10G008830 vs. Swiss-Prot
Match: RK29_ARATH (50S ribosomal protein L29, chloroplastic OS=Arabidopsis thaliana GN=RPL29 PE=1 SV=1)

HSP 1 Score: 204.9 bits (520), Expect = 6.8e-52
Identity = 111/168 (66.07%), Postives = 133/168 (79.17%), Query Frame = 1


Query: 1   MINLSIASPSTVSIPSKVLYS--TSKSSFNGLQIRFPFSFRVPPKTACTGGRNSP-VVMM 60
           M++LSIA+P T +I  +   S  ++ SSF+G++I+   S RVP     +     P VVMM
Sbjct: 1   MLSLSIATPGTAAIFRRGTASATSTSSSFHGVRIQHQVSARVPAAATISSSSPKPSVVMM 60

Query: 61  AKREEELKEIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFTSSEFRRMRKRIARMLTV 120
           +KRE ELKEIR+KTTE++ EEVVDLKGEL MLRLQKSARNEF SS+FRRM+K++ARMLTV
Sbjct: 61  SKREAELKEIRSKTTEQLQEEVVDLKGELFMLRLQKSARNEFKSSDFRRMKKQVARMLTV 120

Query: 121 KREREIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREEEAAAEEAE 166
           KREREI+EG+ KRLSRKLDR+WKKSIV RPPPSLKKL+EEEAA E AE
Sbjct: 121 KREREIKEGIKKRLSRKLDRQWKKSIVPRPPPSLKKLQEEEAAEEAAE 168

[Close]

BLAST of ClCG10G008830 vs. Swiss-Prot
Match: RK29_MAIZE (50S ribosomal protein L29, chloroplastic OS=Zea mays GN=RPL29 PE=2 SV=1)

HSP 1 Score: 161.4 bits (407), Expect = 8.7e-39
Identity = 81/108 (75.00%), Postives = 94/108 (87.04%), Query Frame = 1


Query: 50  RNSPVVMMAKREEELKEIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFTSSEFRRMRK 109
           R + +V MAKRE+EL+EIRA TTE++ EEVVDLKGEL +LRL++SAR EF +SEF RMRK
Sbjct: 54  RAAAMVAMAKREQELEEIRAMTTEQMEEEVVDLKGELFLLRLKRSARQEFKNSEFSRMRK 113

Query: 110 RIARMLTVKREREIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREE 158
           RIARMLTVKREREIE+G+ KRLSRKLDRKWK+SIVVRPPPSL+  +EE
Sbjct: 114 RIARMLTVKREREIEQGINKRLSRKLDRKWKQSIVVRPPPSLRGNKEE 161

[Close]

BLAST of ClCG10G008830 vs. Swiss-Prot
Match: RL29_STAS1 (50S ribosomal protein L29 OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=rpmC PE=3 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 2.0e-06
Identity = 30/62 (48.39%), Postives = 36/62 (58.06%), Query Frame = 1


Query: 65  KEIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFTSSEFRRMRKRIARMLTVKREREIE 124
           KEIR  TT EI E++   K EL  LR Q +      ++  R +RK IAR+ TV REREIE
Sbjct: 4   KEIRDLTTSEIEEQIKSSKEELFNLRFQLATGQLEETARIRTVRKTIARLKTVAREREIE 63

Query: 125 EG 127
           +G
Sbjct: 64  QG 65

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BLAST of ClCG10G008830 vs. Swiss-Prot
Match: RL29_STAHJ (50S ribosomal protein L29 OS=Staphylococcus haemolyticus (strain JCSC1435) GN=rpmC PE=3 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 4.3e-06
Identity = 30/61 (49.18%), Postives = 35/61 (57.38%), Query Frame = 1


Query: 65  KEIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFTSSEFRRMRKRIARMLTVKREREIE 124
           KEIR  TT EI E++   K EL  LR Q +      ++  R +RK IAR+ TV REREIE
Sbjct: 4   KEIRDLTTSEIEEQIKSSKEELFNLRFQLATGQLEETARIRTVRKTIARLKTVAREREIE 63

Query: 125 E 126
           E
Sbjct: 64  E 64

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BLAST of ClCG10G008830 vs. Swiss-Prot
Match: RL29_STAEQ (50S ribosomal protein L29 OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=rpmC PE=3 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 9.7e-06
Identity = 29/61 (47.54%), Postives = 35/61 (57.38%), Query Frame = 1


Query: 65  KEIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFTSSEFRRMRKRIARMLTVKREREIE 124
           KEIR  TT EI E++   K EL  LR Q +      ++  R +RK IAR+ TV REREIE
Sbjct: 4   KEIRDLTTSEIEEQIKSSKEELFNLRFQLATGQLEETARIRTVRKTIARLKTVAREREIE 63

Query: 125 E 126
           +
Sbjct: 64  Q 64

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BLAST of ClCG10G008830 vs. TrEMBL
Match: A0A0A0KVL7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G095600 PE=3 SV=1)

HSP 1 Score: 286.2 bits (731), Expect = 2.6e-74
Identity = 153/170 (90.00%), Postives = 161/170 (94.71%), Query Frame = 1


Query: 1   MINLSIAS-PSTVSIPSKVLYSTSKSSFNGLQIRFPFSFRVPPKTACTG-GRNSPVVMMA 60
           MINLSIAS PST+ IPSK L STSKSSFN LQIRFPFSFR+PPKTA TG GRNS VVMMA
Sbjct: 1   MINLSIASLPSTLPIPSKFLNSTSKSSFNALQIRFPFSFRLPPKTATTGRGRNSSVVMMA 60

Query: 61  KREEELKEIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFTSSEFRRMRKRIARMLTVK 120
           KRE+ELK+IR+KTTEEINEEV+DLKGELLMLRLQKSARNEF SSEFRRMRKRI+RMLTV+
Sbjct: 61  KREDELKDIRSKTTEEINEEVIDLKGELLMLRLQKSARNEFKSSEFRRMRKRISRMLTVR 120

Query: 121 REREIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREEEAAAEEAEKSA 169
           REREIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREEEAAAEEAEKSA
Sbjct: 121 REREIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREEEAAAEEAEKSA 170

[Close]

BLAST of ClCG10G008830 vs. TrEMBL
Match: V4SW89_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10026623mg PE=3 SV=1)

HSP 1 Score: 229.6 bits (584), Expect = 2.9e-57
Identity = 125/170 (73.53%), Postives = 145/170 (85.29%), Query Frame = 1


Query: 2   INLSIASPSTVSIPSKVLYSTSKSSFNGLQIRFPFSFRVPPK--TACTGGR-NSPVVMMA 61
           ++LSIAS +T++ P++      KS+FNG+QIR  +  R P +  T+ +G R +S VVMMA
Sbjct: 3   MSLSIASTTTITFPTEPFSKIPKSTFNGIQIRQSWPIRTPLRFATSSSGSRGSSTVVMMA 62

Query: 62  KREEELKEIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFTSSEFRRMRKRIARMLTVK 121
           KREEE+KEIRAKTTEEINEEVVDLKGEL MLRLQKS RNEF SSEFRRMR+RIARMLTVK
Sbjct: 63  KREEEMKEIRAKTTEEINEEVVDLKGELFMLRLQKSVRNEFKSSEFRRMRRRIARMLTVK 122

Query: 122 REREIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREEEAAAEEAEKSA 169
           RERE+EEG+ KRLSRKLDR+WKKSIVVRPPPSLKKL+EEEAAA EAEKSA
Sbjct: 123 RERELEEGINKRLSRKLDRQWKKSIVVRPPPSLKKLQEEEAAA-EAEKSA 171

[Close]

BLAST of ClCG10G008830 vs. TrEMBL
Match: A0A067ERN3_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g030809mg PE=3 SV=1)

HSP 1 Score: 229.2 bits (583), Expect = 3.8e-57
Identity = 125/170 (73.53%), Postives = 145/170 (85.29%), Query Frame = 1


Query: 2   INLSIASPSTVSIPSKVLYSTSKSSFNGLQIRFPFSFRVPPK--TACTGGR-NSPVVMMA 61
           ++LSIAS +T++ P++      KS+FNG+QIR  +  R P +  T+ +G R +S VVMMA
Sbjct: 3   MSLSIASTTTITFPTEPFSKIPKSTFNGVQIRQSWPIRTPLRFATSSSGSRGSSAVVMMA 62

Query: 62  KREEELKEIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFTSSEFRRMRKRIARMLTVK 121
           KREEE+KEIRAKTTEEINEEVVDLKGEL MLRLQKS RNEF SSEFRRMR+RIARMLTVK
Sbjct: 63  KREEEMKEIRAKTTEEINEEVVDLKGELFMLRLQKSVRNEFKSSEFRRMRRRIARMLTVK 122

Query: 122 REREIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREEEAAAEEAEKSA 169
           RERE+EEG+ KRLSRKLDR+WKKSIVVRPPPSLKKL+EEEAAA EAEKSA
Sbjct: 123 RERELEEGINKRLSRKLDRQWKKSIVVRPPPSLKKLQEEEAAA-EAEKSA 171

[Close]

BLAST of ClCG10G008830 vs. TrEMBL
Match: F6HWM0_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_07s0141g00200 PE=3 SV=1)

HSP 1 Score: 227.6 bits (579), Expect = 1.1e-56
Identity = 126/169 (74.56%), Postives = 140/169 (82.84%), Query Frame = 1


Query: 1   MINLSIASPSTVSIPSKVLYSTSKSSFNGLQIRFPF--SFRVPPKTACTGGRNSPVVMMA 60
           M +LSIASPS++ IP K   +  KSSFNG++I  P+  SFR P  +       S VVMMA
Sbjct: 1   MFSLSIASPSSLKIPPKTTSTFPKSSFNGIRIPTPYKPSFRSPSSS-------SSVVMMA 60

Query: 61  KREEELKEIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFTSSEFRRMRKRIARMLTVK 120
           KREEELKEIRAKTTEE+NEE+VDLKGELLMLRLQKS RNEF  SEF RMRKR+ARMLTVK
Sbjct: 61  KREEELKEIRAKTTEELNEEIVDLKGELLMLRLQKSVRNEFKPSEFGRMRKRVARMLTVK 120

Query: 121 REREIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREEEAAAEEAEKS 168
           REREIEEG+ KRLSRKLDR+WKKSIVVRPPPSLKKL+EEEAAA EAEKS
Sbjct: 121 REREIEEGINKRLSRKLDRQWKKSIVVRPPPSLKKLQEEEAAA-EAEKS 161

[Close]

BLAST of ClCG10G008830 vs. TrEMBL
Match: F6I6Q6_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_12s0121g00010 PE=3 SV=1)

HSP 1 Score: 225.3 bits (573), Expect = 5.4e-56
Identity = 126/169 (74.56%), Postives = 139/169 (82.25%), Query Frame = 1


Query: 1   MINLSIASPSTVSIPSKVLYSTSKSSFNGLQIRFPF--SFRVPPKTACTGGRNSPVVMMA 60
           M +LSIASPS++ IP K   +  KSSFNG++I  P   SFR P  +       S VVMMA
Sbjct: 1   MFSLSIASPSSLKIPPKTTSTFPKSSFNGIRIPTPNKPSFRSPSSS-------SSVVMMA 60

Query: 61  KREEELKEIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFTSSEFRRMRKRIARMLTVK 120
           KREEELKEIRAKTTEE+NEE+VDLKGELLMLRLQKS RNEF  SEF RMRKR+ARMLTVK
Sbjct: 61  KREEELKEIRAKTTEELNEEIVDLKGELLMLRLQKSVRNEFKPSEFGRMRKRVARMLTVK 120

Query: 121 REREIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREEEAAAEEAEKS 168
           REREIEEG+ KRLSRKLDR+WKKSIVVRPPPSLKKL+EEEAAA EAEKS
Sbjct: 121 REREIEEGINKRLSRKLDRQWKKSIVVRPPPSLKKLQEEEAAA-EAEKS 161

[Close]

BLAST of ClCG10G008830 vs. TAIR10
Match: AT5G65220.1 (AT5G65220.1 Ribosomal L29 family protein )

HSP 1 Score: 204.9 bits (520), Expect = 3.9e-53
Identity = 111/168 (66.07%), Postives = 133/168 (79.17%), Query Frame = 1


Query: 1   MINLSIASPSTVSIPSKVLYS--TSKSSFNGLQIRFPFSFRVPPKTACTGGRNSP-VVMM 60
           M++LSIA+P T +I  +   S  ++ SSF+G++I+   S RVP     +     P VVMM
Sbjct: 1   MLSLSIATPGTAAIFRRGTASATSTSSSFHGVRIQHQVSARVPAAATISSSSPKPSVVMM 60

Query: 61  AKREEELKEIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFTSSEFRRMRKRIARMLTV 120
           +KRE ELKEIR+KTTE++ EEVVDLKGEL MLRLQKSARNEF SS+FRRM+K++ARMLTV
Sbjct: 61  SKREAELKEIRSKTTEQLQEEVVDLKGELFMLRLQKSARNEFKSSDFRRMKKQVARMLTV 120

Query: 121 KREREIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREEEAAAEEAE 166
           KREREI+EG+ KRLSRKLDR+WKKSIV RPPPSLKKL+EEEAA E AE
Sbjct: 121 KREREIKEGIKKRLSRKLDRQWKKSIVPRPPPSLKKLQEEEAAEEAAE 168

[Close]

BLAST of ClCG10G008830 vs. NCBI nr
Match: gi|449438829|ref|XP_004137190.1| (PREDICTED: 50S ribosomal protein L29, chloroplastic [Cucumis sativus])

HSP 1 Score: 286.2 bits (731), Expect = 3.7e-74
Identity = 153/170 (90.00%), Postives = 161/170 (94.71%), Query Frame = 1


Query: 1   MINLSIAS-PSTVSIPSKVLYSTSKSSFNGLQIRFPFSFRVPPKTACTG-GRNSPVVMMA 60
           MINLSIAS PST+ IPSK L STSKSSFN LQIRFPFSFR+PPKTA TG GRNS VVMMA
Sbjct: 1   MINLSIASLPSTLPIPSKFLNSTSKSSFNALQIRFPFSFRLPPKTATTGRGRNSSVVMMA 60

Query: 61  KREEELKEIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFTSSEFRRMRKRIARMLTVK 120
           KRE+ELK+IR+KTTEEINEEV+DLKGELLMLRLQKSARNEF SSEFRRMRKRI+RMLTV+
Sbjct: 61  KREDELKDIRSKTTEEINEEVIDLKGELLMLRLQKSARNEFKSSEFRRMRKRISRMLTVR 120

Query: 121 REREIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREEEAAAEEAEKSA 169
           REREIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREEEAAAEEAEKSA
Sbjct: 121 REREIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREEEAAAEEAEKSA 170

[Close]

BLAST of ClCG10G008830 vs. NCBI nr
Match: gi|659111132|ref|XP_008455595.1| (PREDICTED: 50S ribosomal protein L29, chloroplastic [Cucumis melo])

HSP 1 Score: 285.0 bits (728), Expect = 8.3e-74
Identity = 154/170 (90.59%), Postives = 159/170 (93.53%), Query Frame = 1


Query: 1   MINLSIAS-PSTVSIPSKVLYSTSKSSFNGLQIRFPFSFRVPPKTACTG-GRNSPVVMMA 60
           MINLS+AS PS + IPSK L STSKS FNGLQIRFPFSF VPPKTA TG GRNS VVMMA
Sbjct: 1   MINLSVASLPSALPIPSKFLNSTSKSFFNGLQIRFPFSFCVPPKTATTGGGRNSSVVMMA 60

Query: 61  KREEELKEIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFTSSEFRRMRKRIARMLTVK 120
           KREEELK+IRAKTTEEINEEVVDLKGELLMLRLQKSARNEF SSEFRRMRKRI+RMLTVK
Sbjct: 61  KREEELKDIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFKSSEFRRMRKRISRMLTVK 120

Query: 121 REREIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREEEAAAEEAEKSA 169
           REREIEEGVGKR+SRKLDRKWKKSIVVRPPPSLKKLREEEAAAEEAEKSA
Sbjct: 121 REREIEEGVGKRMSRKLDRKWKKSIVVRPPPSLKKLREEEAAAEEAEKSA 170

[Close]

BLAST of ClCG10G008830 vs. NCBI nr
Match: gi|694437160|ref|XP_009345632.1| (PREDICTED: 50S ribosomal protein L29, chloroplastic-like [Pyrus x bretschneideri])

HSP 1 Score: 233.8 bits (595), Expect = 2.2e-58
Identity = 127/171 (74.27%), Postives = 146/171 (85.38%), Query Frame = 1


Query: 4   LSIASPSTVSIPSKVLYSTSKSSFNGLQIRF---PFSFRVPPKTA---CTGGRNSPVVMM 63
           +SIA PSTV+ PSK+L   SKSSFNG++++        R+P +++   C+   +S VVMM
Sbjct: 5   ISIAPPSTVTFPSKLLSPVSKSSFNGMRVQRLCPNIGVRLPTESSRRPCSP--SSSVVMM 64

Query: 64  AKREEELKEIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFTSSEFRRMRKRIARMLTV 123
           AKREEE+KEIR KTTEEINEEVVDLKGEL MLRLQKSARNEFTSSEFRRMRKRIAR+LTV
Sbjct: 65  AKREEEMKEIRTKTTEEINEEVVDLKGELFMLRLQKSARNEFTSSEFRRMRKRIARLLTV 124

Query: 124 KREREIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREEEAAAEEAEKSA 169
           KREREIEEG+GKRLSRK DR+WKKSIVVRPPPSLKKL+EEEAAAE AEK+A
Sbjct: 125 KREREIEEGIGKRLSRKFDRQWKKSIVVRPPPSLKKLQEEEAAAEAAEKAA 173

[Close]

BLAST of ClCG10G008830 vs. NCBI nr
Match: gi|729450197|ref|XP_010523326.1| (PREDICTED: 50S ribosomal protein L29, chloroplastic [Tarenaya hassleriana])

HSP 1 Score: 231.5 bits (589), Expect = 1.1e-57
Identity = 125/170 (73.53%), Postives = 142/170 (83.53%), Query Frame = 1


Query: 1   MINLSIASPSTVSI--PSKVLYSTSKSSFNGLQIRFPFSFRVPPKTACTGGRNSPVVMMA 60
           M++ SIA PS  ++     V  +++ SSF+G++IR     RVP  T  +   ++ VVMMA
Sbjct: 1   MLSFSIAPPSMAAVFPRGSVSGTSTSSSFHGVRIRHAVPVRVPAATISSRKSSATVVMMA 60

Query: 61  KREEELKEIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFTSSEFRRMRKRIARMLTVK 120
           KREEELK IRAKTT+EINEEVVDLKGEL MLRLQKSARNEF SSEFRRMRKR+ARMLTVK
Sbjct: 61  KREEELKAIRAKTTDEINEEVVDLKGELFMLRLQKSARNEFKSSEFRRMRKRVARMLTVK 120

Query: 121 REREIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREEEAAAEEAEKSA 169
           REREIEEGVGKRLSRKLDR+WKKSIVVRPPPSLKKL+EEEAAAEEAEKSA
Sbjct: 121 REREIEEGVGKRLSRKLDRQWKKSIVVRPPPSLKKLQEEEAAAEEAEKSA 170

[Close]

BLAST of ClCG10G008830 vs. NCBI nr
Match: gi|567871169|ref|XP_006428206.1| (hypothetical protein CICLE_v10026623mg [Citrus clementina])

HSP 1 Score: 229.6 bits (584), Expect = 4.1e-57
Identity = 125/170 (73.53%), Postives = 145/170 (85.29%), Query Frame = 1


Query: 2   INLSIASPSTVSIPSKVLYSTSKSSFNGLQIRFPFSFRVPPK--TACTGGR-NSPVVMMA 61
           ++LSIAS +T++ P++      KS+FNG+QIR  +  R P +  T+ +G R +S VVMMA
Sbjct: 3   MSLSIASTTTITFPTEPFSKIPKSTFNGIQIRQSWPIRTPLRFATSSSGSRGSSTVVMMA 62

Query: 62  KREEELKEIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFTSSEFRRMRKRIARMLTVK 121
           KREEE+KEIRAKTTEEINEEVVDLKGEL MLRLQKS RNEF SSEFRRMR+RIARMLTVK
Sbjct: 63  KREEEMKEIRAKTTEEINEEVVDLKGELFMLRLQKSVRNEFKSSEFRRMRRRIARMLTVK 122

Query: 122 REREIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREEEAAAEEAEKSA 169
           RERE+EEG+ KRLSRKLDR+WKKSIVVRPPPSLKKL+EEEAAA EAEKSA
Sbjct: 123 RERELEEGINKRLSRKLDRQWKKSIVVRPPPSLKKLQEEEAAA-EAEKSA 171

The following BLAST results are available for this feature:

BLAST of ClCG10G008830 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RK29_ARATH	6.8e-52	66.07	50S ribosomal protein L29, chloroplastic OS=Arabidopsis thaliana GN=RPL29 PE=1 S...	[more]
RK29_MAIZE	8.7e-39	75.00	50S ribosomal protein L29, chloroplastic OS=Zea mays GN=RPL29 PE=2 SV=1	[more]
RL29_STAS1	2.0e-06	48.39	50S ribosomal protein L29 OS=Staphylococcus saprophyticus subsp. saprophyticus (...	[more]
RL29_STAHJ	4.3e-06	49.18	50S ribosomal protein L29 OS=Staphylococcus haemolyticus (strain JCSC1435) GN=rp...	[more]
RL29_STAEQ	9.7e-06	47.54	50S ribosomal protein L29 OS=Staphylococcus epidermidis (strain ATCC 35984 / RP6...	[more]

BLAST of ClCG10G008830 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KVL7_CUCSA	2.6e-74	90.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G095600 PE=3 SV=1	[more]
V4SW89_9ROSI	2.9e-57	73.53	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10026623mg PE=3 SV=1	[more]
A0A067ERN3_CITSI	3.8e-57	73.53	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g030809mg PE=3 SV=1	[more]
F6HWM0_VITVI	1.1e-56	74.56	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_07s0141g00200 PE=3 SV=...	[more]
F6I6Q6_VITVI	5.4e-56	74.56	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_12s0121g00010 PE=3 SV=...	[more]

BLAST of ClCG10G008830 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G65220.1	3.9e-53	66.07	Ribosomal L29 family protein	[more]

BLAST of ClCG10G008830 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449438829\|ref\|XP_004137190.1\|	3.7e-74	90.00	PREDICTED: 50S ribosomal protein L29, chloroplastic [Cucumis sativus]	[more]
gi\|659111132\|ref\|XP_008455595.1\|	8.3e-74	90.59	PREDICTED: 50S ribosomal protein L29, chloroplastic [Cucumis melo]	[more]
gi\|694437160\|ref\|XP_009345632.1\|	2.2e-58	74.27	PREDICTED: 50S ribosomal protein L29, chloroplastic-like [Pyrus x bretschneideri...	[more]
gi\|729450197\|ref\|XP_010523326.1\|	1.1e-57	73.53	PREDICTED: 50S ribosomal protein L29, chloroplastic [Tarenaya hassleriana]	[more]
gi\|567871169\|ref\|XP_006428206.1\|	4.1e-57	73.53	hypothetical protein CICLE_v10026623mg [Citrus clementina]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001854	Ribosomal_L29/L35

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome

Vocabulary: **Cellular Component**
Term	Definition
GO:0005622	intracellular
GO:0005840	ribosome

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006412	translation
biological_process	GO:0006354	DNA-templated transcription, elongation
biological_process	GO:0045893	positive regulation of transcription, DNA-templated
biological_process	GO:0042793	transcription from plastid promoter
cellular_component	GO:0009941	chloroplast envelope
cellular_component	GO:0009570	chloroplast stroma
cellular_component	GO:0009295	nucleoid
cellular_component	GO:0005840	ribosome
cellular_component	GO:0005622	intracellular
cellular_component	GO:0022625	cytosolic large ribosomal subunit
molecular_function	GO:0003735	structural constituent of ribosome

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG10G008830.1	ClCG10G008830.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001854	Ribosomal protein L29	GENE3D	G3DSA:1.10.287.310		coord: 64..125 score: 7.2
IPR001854	Ribosomal protein L29	HAMAP	MF_00374	Ribosomal_L29	coord: 62..121 score: 13
IPR001854	Ribosomal protein L29	PFAM	PF00831	Ribosomal_L29	coord: 65..121 score: 7.5
IPR001854	Ribosomal protein L29	TIGRFAMs	TIGR00012	TIGR00012	coord: 66..121 score: 2.8
IPR001854	Ribosomal protein L29	unknown	SSF46561	Ribosomal protein L29 (L29p)	coord: 64..124 score: 8.9
None	No IPR available	unknown	Coil	Coil	coord: 151..168 scor
None	No IPR available	PANTHER	PTHR10916	60S RIBOSOMAL PROTEIN L35/50S RIBOSOMAL PROTEIN L29	coord: 3..164 score: 7.0
None	No IPR available	PANTHER	PTHR10916:SF0	50S RIBOSOMAL PROTEIN L29, CHLOROPLASTIC	coord: 3..164 score: 7.0

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
ClCG10G008830	Csa4G095600	Cucumber (Chinese Long) v2	cuwcgB276
ClCG10G008830	Cla004837	Watermelon (97103) v1	wcgwmB059
ClCG10G008830	Cla97C10G192140	Watermelon (97103) v2	wcgwmbB038
ClCG10G008830	Bhi11G000826	Wax gourd	wcgwgoB078
ClCG10G008830	CSPI04G08690	Wild cucumber (PI 183967)	cpiwcgB285
ClCG10G008830	Cucsa.273030	Cucumber (Gy14) v1	cgywcgB474
ClCG10G008830	CmaCh16G007170	Cucurbita maxima (Rimu)	cmawcgB283
ClCG10G008830	CmaCh04G008280	Cucurbita maxima (Rimu)	cmawcgB614
ClCG10G008830	CmoCh04G008850	Cucurbita moschata (Rifu)	cmowcgB616
ClCG10G008830	CmoCh16G007730	Cucurbita moschata (Rifu)	cmowcgB278
ClCG10G008830	Lsi03G009220	Bottle gourd (USVL1VR-Ls)	lsiwcgB219
ClCG10G008830	Cp4.1LG14g01040	Cucurbita pepo (Zucchini)	cpewcgB195
ClCG10G008830	Cp4.1LG01g09230	Cucurbita pepo (Zucchini)	cpewcgB349
ClCG10G008830	CsGy4G008520	Cucumber (Gy14) v2	cgybwcgB255
ClCG10G008830	Carg05831	Silver-seed gourd	carwcgB0991
ClCG10G008830	Carg14228	Silver-seed gourd	carwcgB0914
ClCG10G008830	CsaV3_4G008900	Cucumber (Chinese Long) v3	cucwcgB284

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
ClCG10G008830	Melon (DHL92) v3.5.1	mewcgB456
ClCG10G008830	Melon (DHL92) v3.6.1	medwcgB449