CmaCh04G008280 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh04G008280
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
Description50S ribosomal protein L29
LocationCma_Chr04 : 4239680 .. 4241896 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TCTTCTTCGAACAAAAGCGCTGTGCTGTGACTGAGCGAAACCACACACTGACGGTGAAGATGATGAACCTTTCAATTGCTTCGCCTTCGAGCGTTTCTTTCCCTTCTAAATTTCTTAGCTCGACCTCCAAATCCTCCTTCAATGGCCGTCAAATCCGTTTCCCATTTTCGTTTCGCGTTCCTCCTAAAACAGCATCTACTGGAGGCCGCAATTCGTCGGTGGTAATGATGGCGAAGAGGGAGGAGGAGTTGAAGGAAATCAGAACGAAAACTACTGAGGAAATAAACGAAGAGGTCATCGATCTTAAGGGTGAACTTCTTATGCTTCGGCTTCAGAAATCAGCTCGCAATGAGTTTAAGTCCAGCGAATTCCGCCGCATGCGCAAACGGGTAATTTTCTCCCTTATTGATAGATTCTTAATTAACTTTGAGTTCTATTATAATGTGGCTTTTTTGTCCGTCTTTAATTTATAATCTATGCGAAGTATATTTTAAGTCCTACAGTCTCCCATTCTCCACATTTCTGCTTATTTTGTGCTGAATTTGATGGTCGGATTGAAATTTGGGGCTCATTGGTTTCCAATGGGGTTTCGTAGCTGTTGGAATCTAAGATTATTGCATATTATTTGCCGCCAAATGAAAGAAGAGTAGCAAATTAACGTATGAAAAGTAAAAAGAAAAAAAGAACCTCGAACGATATGTTTCACCATGTTGGGAAAAGCTTAGAGAAGCTGCATTTGAAGGAAACAGAAAAACTATGCAATTAGGGAGCCAGTTAGAGCTGCTCTGCACTTAGAAATCCAATTAGAATCAAGAAATGTTATTGAAATTGGGATTTCTAGGCATTTAAAACTTCGAATTCGTCTAAGATTAACTCCAAATGTAACTCCTTATTAGAAATAGCTCTCTCGTGGATTATAATTCTTTATACGTTTAGCACCTATCTTCAAAAAACTCTTCAATGTCTTCCTGCTAACAATTTATCTAAGATTCCCAAAATTCCGGAAGCATGAATGAGCCTATATATATGGAAATGACAATTCCATTTGGGTTCAAAGTTACTTAATCTTTGTATGAAGCTGGTTATTTGATAAACTAAACCTATTCTGATCACGAAGCATCACAATGTTGAATGTGTAGAGAGAGGCATATGCATTTGAACAATATGTAGCCTTCTCATGAATTTTCTATCAAAGTGCTTCCTGCTTAGTGCATTACATGGATGTCGGAATTGTTTGCTGGGCCTCTCATTACATGGATGTTCTATTGGTAAGACTTGCTGTTCTCATAGTTTCGTTGTGTCGAGTCTGAGGATTTAGGAAGCAAACTTTTTTCATTTATAGTTGAATACCGCACCTTCATGATAAGTTTAGATGCTCATAGTTACCCTCTTAAGGGTTGGTTCTGGATTCCAACTTGACAACTTACCGCTTAAAATCCTTCCTTACTGTCTAGCCTGCTCGAAAATTGGCAGTGTGGATCATGTATATGGGAGTGGGGCTTGATGATCTATATAGTATTGCAGAGATCGATTAATATATTTGCTGATGCAGGACAGTTTGGAAGTTTATATAGTATATGGTTCCTGTCTCCTTCTTCTTGTTCTTTATCTCCACACATTTTCGGTTTGCATTGTCGCCATACATCCATTTTTCTTCTTTTTCTCTGAGTTATCAATCTCTTAACCCTGAACTTGTGGTTGGAATATATGTCTTAACTAATTGAGCTGTGATTAATTTGGGAGCTATACATCGAATATTTAGACTTAGACCAACAACTTTCGTTTCGTTTCTCTTATACATCCATGAAACTTGGAGTTTTGTTTGACGAATGGCAGATTGCTCGGATGCTAACCGTGAAACGTGAAAGAGAGATTGAAGAGGGAGTGGGCAAAAGGCTGTCAAGAAAGTTAGACAGAAAGTGGAAGAGAAGTATTGTGGTCAGGCCACCTCCATCTTTGAAGAAGTTGCGAGAGGAAGAAGCAGCCGCTGAAGAAGCTGAGAAATCTGCTTGATCCAATCAGATATACTCTCAACCAATATTGTGGCTTTATGAGTTTCTGATTTTTTTTTTCCCGAAAAATTCTTATGTTGTACTTAGCTTATGCATAAATGGGAACATATTTTGAATAATTCTAATCTTCAAATTGAAAATTCTATTACTTATTCTTAGTTGATCAAGAGATTGTGGGAAACTCCCATTAAGCATATGGAAGCCT

mRNA sequence

TCTTCTTCGAACAAAAGCGCTGTGCTGTGACTGAGCGAAACCACACACTGACGGTGAAGATGATGAACCTTTCAATTGCTTCGCCTTCGAGCGTTTCTTTCCCTTCTAAATTTCTTAGCTCGACCTCCAAATCCTCCTTCAATGGCCGTCAAATCCGTTTCCCATTTTCGTTTCGCGTTCCTCCTAAAACAGCATCTACTGGAGGCCGCAATTCGTCGGTGGTAATGATGGCGAAGAGGGAGGAGGAGTTGAAGGAAATCAGAACGAAAACTACTGAGGAAATAAACGAAGAGGTCATCGATCTTAAGGGTGAACTTCTTATGCTTCGGCTTCAGAAATCAGCTCGCAATGAGTTTAAGTCCAGCGAATTCCGCCGCATGCGCAAACGGATTGCTCGGATGCTAACCGTGAAACGTGAAAGAGAGATTGAAGAGGGAGTGGGCAAAAGGCTGTCAAGAAAGTTAGACAGAAAGTGGAAGAGAAGTATTGTGGTCAGGCCACCTCCATCTTTGAAGAAGTTGCGAGAGGAAGAAGCAGCCGCTGAAGAAGCTGAGAAATCTGCTTGATCCAATCAGATATACTCTCAACCAATATTGTGGCTTTATGAGTTTCTGATTTTTTTTTTCCCGAAAAATTCTTATGTTGTACTTAGCTTATGCATAAATGGGAACATATTTTGAATAATTCTAATCTTCAAATTGAAAATTCTATTACTTATTCTTAGTTGATCAAGAGATTGTGGGAAACTCCCATTAAGCATATGGAAGCCT

Coding sequence (CDS)

ATGATGAACCTTTCAATTGCTTCGCCTTCGAGCGTTTCTTTCCCTTCTAAATTTCTTAGCTCGACCTCCAAATCCTCCTTCAATGGCCGTCAAATCCGTTTCCCATTTTCGTTTCGCGTTCCTCCTAAAACAGCATCTACTGGAGGCCGCAATTCGTCGGTGGTAATGATGGCGAAGAGGGAGGAGGAGTTGAAGGAAATCAGAACGAAAACTACTGAGGAAATAAACGAAGAGGTCATCGATCTTAAGGGTGAACTTCTTATGCTTCGGCTTCAGAAATCAGCTCGCAATGAGTTTAAGTCCAGCGAATTCCGCCGCATGCGCAAACGGATTGCTCGGATGCTAACCGTGAAACGTGAAAGAGAGATTGAAGAGGGAGTGGGCAAAAGGCTGTCAAGAAAGTTAGACAGAAAGTGGAAGAGAAGTATTGTGGTCAGGCCACCTCCATCTTTGAAGAAGTTGCGAGAGGAAGAAGCAGCCGCTGAAGAAGCTGAGAAATCTGCTTGA

Protein sequence

MMNLSIASPSSVSFPSKFLSSTSKSSFNGRQIRFPFSFRVPPKTASTGGRNSSVVMMAKREEELKEIRTKTTEEINEEVIDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVKREREIEEGVGKRLSRKLDRKWKRSIVVRPPPSLKKLREEEAAAEEAEKSA
Homology
[Close]
BLAST of CmaCh04G008280 vs. Swiss-Prot
Match: RK29_ARATH (50S ribosomal protein L29, chloroplastic OS=Arabidopsis thaliana GN=RPL29 PE=1 SV=1)

HSP 1 Score: 184.9 bits (468), Expect = 7.3e-46
Identity = 113/168 (67.26%), Postives = 137/168 (81.55%), Query Frame = 1 

Query: 1   MMNLSIASPSSVS-FPSKFLSSTS-KSSFNGRQIRFPFSFRVPPK-TASTGGRNSSVVMM 60
           M++LSIA+P + + F     S+TS  SSF+G +I+   S RVP   T S+     SVVMM
Sbjct: 1   MLSLSIATPGTAAIFRRGTASATSTSSSFHGVRIQHQVSARVPAAATISSSSPKPSVVMM 60

Query: 61  AKREEELKEIRTKTTEEINEEVIDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTV 120
           +KRE ELKEIR+KTTE++ EEV+DLKGEL MLRLQKSARNEFKSS+FRRM+K++ARMLTV
Sbjct: 61  SKREAELKEIRSKTTEQLQEEVVDLKGELFMLRLQKSARNEFKSSDFRRMKKQVARMLTV 120

Query: 121 KREREIEEGVGKRLSRKLDRKWKRSIVVRPPPSLKKLREEEAAAEEAE 166
           KREREI+EG+ KRLSRKLDR+WK+SIV RPPPSLKKL+EEEAA E AE
Sbjct: 121 KREREIKEGIKKRLSRKLDRQWKKSIVPRPPPSLKKLQEEEAAEEAAE 168

[Close]
BLAST of CmaCh04G008280 vs. Swiss-Prot
Match: RK29_MAIZE (50S ribosomal protein L29, chloroplastic OS=Zea mays GN=RPL29 PE=2 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 2.6e-35
Identity = 80/108 (74.07%), Postives = 97/108 (89.81%), Query Frame = 1 

Query: 50  RNSSVVMMAKREEELKEIRTKTTEEINEEVIDLKGELLMLRLQKSARNEFKSSEFRRMRK 109
           R +++V MAKRE+EL+EIR  TTE++ EEV+DLKGEL +LRL++SAR EFK+SEF RMRK
Sbjct: 54  RAAAMVAMAKREQELEEIRAMTTEQMEEEVVDLKGELFLLRLKRSARQEFKNSEFSRMRK 113

Query: 110 RIARMLTVKREREIEEGVGKRLSRKLDRKWKRSIVVRPPPSLKKLREE 158
           RIARMLTVKREREIE+G+ KRLSRKLDRKWK+SIVVRPPPSL+  +EE
Sbjct: 114 RIARMLTVKREREIEQGINKRLSRKLDRKWKQSIVVRPPPSLRGNKEE 161

[Close]
BLAST of CmaCh04G008280 vs. TrEMBL
Match: A0A0A0KVL7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G095600 PE=3 SV=1)

HSP 1 Score: 266.9 bits (681), Expect = 1.6e-68
Identity = 152/170 (89.41%), Postives = 164/170 (96.47%), Query Frame = 1 

Query: 1   MMNLSIAS-PSSVSFPSKFLSSTSKSSFNGRQIRFPFSFRVPPKTASTG-GRNSSVVMMA 60
           M+NLSIAS PS++  PSKFL+STSKSSFN  QIRFPFSFR+PPKTA+TG GRNSSVVMMA
Sbjct: 1   MINLSIASLPSTLPIPSKFLNSTSKSSFNALQIRFPFSFRLPPKTATTGRGRNSSVVMMA 60

Query: 61  KREEELKEIRTKTTEEINEEVIDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVK 120
           KRE+ELK+IR+KTTEEINEEVIDLKGELLMLRLQKSARNEFKSSEFRRMRKRI+RMLTV+
Sbjct: 61  KREDELKDIRSKTTEEINEEVIDLKGELLMLRLQKSARNEFKSSEFRRMRKRISRMLTVR 120

Query: 121 REREIEEGVGKRLSRKLDRKWKRSIVVRPPPSLKKLREEEAAAEEAEKSA 169
           REREIEEGVGKRLSRKLDRKWK+SIVVRPPPSLKKLREEEAAAEEAEKSA
Sbjct: 121 REREIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREEEAAAEEAEKSA 170

[Close]
BLAST of CmaCh04G008280 vs. TrEMBL
Match: V4SW89_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10026623mg PE=3 SV=1)

HSP 1 Score: 214.2 bits (544), Expect = 1.3e-52
Identity = 127/170 (74.71%), Postives = 147/170 (86.47%), Query Frame = 1 

Query: 2   MNLSIASPSSVSFPSKFLSSTSKSSFNGRQIRFPFSFRVPPK--TASTGGRNSS-VVMMA 61
           M+LSIAS ++++FP++  S   KS+FNG QIR  +  R P +  T+S+G R SS VVMMA
Sbjct: 3   MSLSIASTTTITFPTEPFSKIPKSTFNGIQIRQSWPIRTPLRFATSSSGSRGSSTVVMMA 62

Query: 62  KREEELKEIRTKTTEEINEEVIDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVK 121
           KREEE+KEIR KTTEEINEEV+DLKGEL MLRLQKS RNEFKSSEFRRMR+RIARMLTVK
Sbjct: 63  KREEEMKEIRAKTTEEINEEVVDLKGELFMLRLQKSVRNEFKSSEFRRMRRRIARMLTVK 122

Query: 122 REREIEEGVGKRLSRKLDRKWKRSIVVRPPPSLKKLREEEAAAEEAEKSA 169
           RERE+EEG+ KRLSRKLDR+WK+SIVVRPPPSLKKL+EEEAAA EAEKSA
Sbjct: 123 RERELEEGINKRLSRKLDRQWKKSIVVRPPPSLKKLQEEEAAA-EAEKSA 171

[Close]
BLAST of CmaCh04G008280 vs. TrEMBL
Match: A0A067ERN3_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g030809mg PE=3 SV=1)

HSP 1 Score: 214.2 bits (544), Expect = 1.3e-52
Identity = 127/170 (74.71%), Postives = 147/170 (86.47%), Query Frame = 1 

Query: 2   MNLSIASPSSVSFPSKFLSSTSKSSFNGRQIRFPFSFRVPPK--TASTGGRNSS-VVMMA 61
           M+LSIAS ++++FP++  S   KS+FNG QIR  +  R P +  T+S+G R SS VVMMA
Sbjct: 3   MSLSIASTTTITFPTEPFSKIPKSTFNGVQIRQSWPIRTPLRFATSSSGSRGSSAVVMMA 62

Query: 62  KREEELKEIRTKTTEEINEEVIDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVK 121
           KREEE+KEIR KTTEEINEEV+DLKGEL MLRLQKS RNEFKSSEFRRMR+RIARMLTVK
Sbjct: 63  KREEEMKEIRAKTTEEINEEVVDLKGELFMLRLQKSVRNEFKSSEFRRMRRRIARMLTVK 122

Query: 122 REREIEEGVGKRLSRKLDRKWKRSIVVRPPPSLKKLREEEAAAEEAEKSA 169
           RERE+EEG+ KRLSRKLDR+WK+SIVVRPPPSLKKL+EEEAAA EAEKSA
Sbjct: 123 RERELEEGINKRLSRKLDRQWKKSIVVRPPPSLKKLQEEEAAA-EAEKSA 171

[Close]
BLAST of CmaCh04G008280 vs. TrEMBL
Match: F6HWM0_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_07s0141g00200 PE=3 SV=1)

HSP 1 Score: 208.0 bits (528), Expect = 9.0e-51
Identity = 126/169 (74.56%), Postives = 140/169 (82.84%), Query Frame = 1 

Query: 1   MMNLSIASPSSVSFPSKFLSSTSKSSFNGRQIRFPF--SFRVPPKTASTGGRNSSVVMMA 60
           M +LSIASPSS+  P K  S+  KSSFNG +I  P+  SFR P  +       SSVVMMA
Sbjct: 1   MFSLSIASPSSLKIPPKTTSTFPKSSFNGIRIPTPYKPSFRSPSSS-------SSVVMMA 60

Query: 61  KREEELKEIRTKTTEEINEEVIDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVK 120
           KREEELKEIR KTTEE+NEE++DLKGELLMLRLQKS RNEFK SEF RMRKR+ARMLTVK
Sbjct: 61  KREEELKEIRAKTTEELNEEIVDLKGELLMLRLQKSVRNEFKPSEFGRMRKRVARMLTVK 120

Query: 121 REREIEEGVGKRLSRKLDRKWKRSIVVRPPPSLKKLREEEAAAEEAEKS 168
           REREIEEG+ KRLSRKLDR+WK+SIVVRPPPSLKKL+EEEAAA EAEKS
Sbjct: 121 REREIEEGINKRLSRKLDRQWKKSIVVRPPPSLKKLQEEEAAA-EAEKS 161

[Close]
BLAST of CmaCh04G008280 vs. TrEMBL
Match: A0A061DI09_THECC (Ribosomal L29 family protein OS=Theobroma cacao GN=TCM_001105 PE=3 SV=1)

HSP 1 Score: 207.6 bits (527), Expect = 1.2e-50
Identity = 124/170 (72.94%), Postives = 144/170 (84.71%), Query Frame = 1 

Query: 1   MMNLSIASPSSVSFPSKFLSSTSKSSFNGRQIRFPFSFRVPPKTAS--TGGRNSSVVMMA 60
           M++LS+ASP++V+FP K  SS  K+SFNG +I+      +P +T S      +SSVVMMA
Sbjct: 50  MLSLSVASPTTVTFPPKPKSSIPKTSFNGVRIQHLCPRPLPSQTTSFRKPSASSSVVMMA 109

Query: 61  KREEELKEIRTKTTEEINEEVIDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVK 120
           KREEE+KEIR KTTEEINEEV++LKGEL MLRLQKS RNEFKSSEFRRMRKRIARMLTVK
Sbjct: 110 KREEEMKEIRAKTTEEINEEVVELKGELFMLRLQKSVRNEFKSSEFRRMRKRIARMLTVK 169

Query: 121 REREIEEGVGKRLSRKLDRKWKRSIVVRPPPSLKKLREEEAAAEEAEKSA 169
           REREIEEG+ KRLSRKLDR+WK+SIVV+PPPSL KLREEE AAE+AEKSA
Sbjct: 170 REREIEEGINKRLSRKLDRRWKKSIVVKPPPSLIKLREEE-AAEQAEKSA 218

[Close]
BLAST of CmaCh04G008280 vs. TAIR10
Match: AT5G65220.1 (AT5G65220.1 Ribosomal L29 family protein )

HSP 1 Score: 184.9 bits (468), Expect = 4.1e-47
Identity = 113/168 (67.26%), Postives = 137/168 (81.55%), Query Frame = 1 

Query: 1   MMNLSIASPSSVS-FPSKFLSSTS-KSSFNGRQIRFPFSFRVPPK-TASTGGRNSSVVMM 60
           M++LSIA+P + + F     S+TS  SSF+G +I+   S RVP   T S+     SVVMM
Sbjct: 1   MLSLSIATPGTAAIFRRGTASATSTSSSFHGVRIQHQVSARVPAAATISSSSPKPSVVMM 60

Query: 61  AKREEELKEIRTKTTEEINEEVIDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTV 120
           +KRE ELKEIR+KTTE++ EEV+DLKGEL MLRLQKSARNEFKSS+FRRM+K++ARMLTV
Sbjct: 61  SKREAELKEIRSKTTEQLQEEVVDLKGELFMLRLQKSARNEFKSSDFRRMKKQVARMLTV 120

Query: 121 KREREIEEGVGKRLSRKLDRKWKRSIVVRPPPSLKKLREEEAAAEEAE 166
           KREREI+EG+ KRLSRKLDR+WK+SIV RPPPSLKKL+EEEAA E AE
Sbjct: 121 KREREIKEGIKKRLSRKLDRQWKKSIVPRPPPSLKKLQEEEAAEEAAE 168

[Close]
BLAST of CmaCh04G008280 vs. NCBI nr
Match: gi|449438829|ref|XP_004137190.1| (PREDICTED: 50S ribosomal protein L29, chloroplastic [Cucumis sativus])

HSP 1 Score: 266.9 bits (681), Expect = 2.3e-68
Identity = 152/170 (89.41%), Postives = 164/170 (96.47%), Query Frame = 1 

Query: 1   MMNLSIAS-PSSVSFPSKFLSSTSKSSFNGRQIRFPFSFRVPPKTASTG-GRNSSVVMMA 60
           M+NLSIAS PS++  PSKFL+STSKSSFN  QIRFPFSFR+PPKTA+TG GRNSSVVMMA
Sbjct: 1   MINLSIASLPSTLPIPSKFLNSTSKSSFNALQIRFPFSFRLPPKTATTGRGRNSSVVMMA 60

Query: 61  KREEELKEIRTKTTEEINEEVIDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVK 120
           KRE+ELK+IR+KTTEEINEEVIDLKGELLMLRLQKSARNEFKSSEFRRMRKRI+RMLTV+
Sbjct: 61  KREDELKDIRSKTTEEINEEVIDLKGELLMLRLQKSARNEFKSSEFRRMRKRISRMLTVR 120

Query: 121 REREIEEGVGKRLSRKLDRKWKRSIVVRPPPSLKKLREEEAAAEEAEKSA 169
           REREIEEGVGKRLSRKLDRKWK+SIVVRPPPSLKKLREEEAAAEEAEKSA
Sbjct: 121 REREIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREEEAAAEEAEKSA 170

[Close]
BLAST of CmaCh04G008280 vs. NCBI nr
Match: gi|659111132|ref|XP_008455595.1| (PREDICTED: 50S ribosomal protein L29, chloroplastic [Cucumis melo])

HSP 1 Score: 265.4 bits (677), Expect = 6.8e-68
Identity = 151/170 (88.82%), Postives = 162/170 (95.29%), Query Frame = 1 

Query: 1   MMNLSIAS-PSSVSFPSKFLSSTSKSSFNGRQIRFPFSFRVPPKTASTG-GRNSSVVMMA 60
           M+NLS+AS PS++  PSKFL+STSKS FNG QIRFPFSF VPPKTA+TG GRNSSVVMMA
Sbjct: 1   MINLSVASLPSALPIPSKFLNSTSKSFFNGLQIRFPFSFCVPPKTATTGGGRNSSVVMMA 60

Query: 61  KREEELKEIRTKTTEEINEEVIDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVK 120
           KREEELK+IR KTTEEINEEV+DLKGELLMLRLQKSARNEFKSSEFRRMRKRI+RMLTVK
Sbjct: 61  KREEELKDIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFKSSEFRRMRKRISRMLTVK 120

Query: 121 REREIEEGVGKRLSRKLDRKWKRSIVVRPPPSLKKLREEEAAAEEAEKSA 169
           REREIEEGVGKR+SRKLDRKWK+SIVVRPPPSLKKLREEEAAAEEAEKSA
Sbjct: 121 REREIEEGVGKRMSRKLDRKWKKSIVVRPPPSLKKLREEEAAAEEAEKSA 170

[Close]
BLAST of CmaCh04G008280 vs. NCBI nr
Match: gi|694437160|ref|XP_009345632.1| (PREDICTED: 50S ribosomal protein L29, chloroplastic-like [Pyrus x bretschneideri])

HSP 1 Score: 215.3 bits (547), Expect = 8.1e-53
Identity = 126/169 (74.56%), Postives = 145/169 (85.80%), Query Frame = 1 

Query: 4   LSIASPSSVSFPSKFLSSTSKSSFNGRQIRF---PFSFRVPPKTASTG-GRNSSVVMMAK 63
           +SIA PS+V+FPSK LS  SKSSFNG +++        R+P +++      +SSVVMMAK
Sbjct: 5   ISIAPPSTVTFPSKLLSPVSKSSFNGMRVQRLCPNIGVRLPTESSRRPCSPSSSVVMMAK 64

Query: 64  REEELKEIRTKTTEEINEEVIDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVKR 123
           REEE+KEIRTKTTEEINEEV+DLKGEL MLRLQKSARNEF SSEFRRMRKRIAR+LTVKR
Sbjct: 65  REEEMKEIRTKTTEEINEEVVDLKGELFMLRLQKSARNEFTSSEFRRMRKRIARLLTVKR 124

Query: 124 EREIEEGVGKRLSRKLDRKWKRSIVVRPPPSLKKLREEEAAAEEAEKSA 169
           EREIEEG+GKRLSRK DR+WK+SIVVRPPPSLKKL+EEEAAAE AEK+A
Sbjct: 125 EREIEEGIGKRLSRKFDRQWKKSIVVRPPPSLKKLQEEEAAAEAAEKAA 173

[Close]
BLAST of CmaCh04G008280 vs. NCBI nr
Match: gi|641837594|gb|KDO56545.1| (hypothetical protein CISIN_1g030809mg [Citrus sinensis])

HSP 1 Score: 214.2 bits (544), Expect = 1.8e-52
Identity = 127/170 (74.71%), Postives = 147/170 (86.47%), Query Frame = 1 

Query: 2   MNLSIASPSSVSFPSKFLSSTSKSSFNGRQIRFPFSFRVPPK--TASTGGRNSS-VVMMA 61
           M+LSIAS ++++FP++  S   KS+FNG QIR  +  R P +  T+S+G R SS VVMMA
Sbjct: 3   MSLSIASTTTITFPTEPFSKIPKSTFNGVQIRQSWPIRTPLRFATSSSGSRGSSAVVMMA 62

Query: 62  KREEELKEIRTKTTEEINEEVIDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVK 121
           KREEE+KEIR KTTEEINEEV+DLKGEL MLRLQKS RNEFKSSEFRRMR+RIARMLTVK
Sbjct: 63  KREEEMKEIRAKTTEEINEEVVDLKGELFMLRLQKSVRNEFKSSEFRRMRRRIARMLTVK 122

Query: 122 REREIEEGVGKRLSRKLDRKWKRSIVVRPPPSLKKLREEEAAAEEAEKSA 169
           RERE+EEG+ KRLSRKLDR+WK+SIVVRPPPSLKKL+EEEAAA EAEKSA
Sbjct: 123 RERELEEGINKRLSRKLDRQWKKSIVVRPPPSLKKLQEEEAAA-EAEKSA 171

[Close]
BLAST of CmaCh04G008280 vs. NCBI nr
Match: gi|729450197|ref|XP_010523326.1| (PREDICTED: 50S ribosomal protein L29, chloroplastic [Tarenaya hassleriana])

HSP 1 Score: 214.2 bits (544), Expect = 1.8e-52
Identity = 128/170 (75.29%), Postives = 144/170 (84.71%), Query Frame = 1 

Query: 1   MMNLSIASPSSVS-FPSKFLSSTS-KSSFNGRQIRFPFSFRVPPKTASTGGRNSSVVMMA 60
           M++ SIA PS  + FP   +S TS  SSF+G +IR     RVP  T S+   +++VVMMA
Sbjct: 1   MLSFSIAPPSMAAVFPRGSVSGTSTSSSFHGVRIRHAVPVRVPAATISSRKSSATVVMMA 60

Query: 61  KREEELKEIRTKTTEEINEEVIDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVK 120
           KREEELK IR KTT+EINEEV+DLKGEL MLRLQKSARNEFKSSEFRRMRKR+ARMLTVK
Sbjct: 61  KREEELKAIRAKTTDEINEEVVDLKGELFMLRLQKSARNEFKSSEFRRMRKRVARMLTVK 120

Query: 121 REREIEEGVGKRLSRKLDRKWKRSIVVRPPPSLKKLREEEAAAEEAEKSA 169
           REREIEEGVGKRLSRKLDR+WK+SIVVRPPPSLKKL+EEEAAAEEAEKSA
Sbjct: 121 REREIEEGVGKRLSRKLDRQWKKSIVVRPPPSLKKLQEEEAAAEEAEKSA 170

The following BLAST results are available for this feature:
BLAST of CmaCh04G008280 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RK29_ARATH7.3e-4667.2650S ribosomal protein L29, chloroplastic OS=Arabidopsis thaliana GN=RPL29 PE=1 S... [more]
RK29_MAIZE2.6e-3574.0750S ribosomal protein L29, chloroplastic OS=Zea mays GN=RPL29 PE=2 SV=1[more]
BLAST of CmaCh04G008280 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KVL7_CUCSA1.6e-6889.41Uncharacterized protein OS=Cucumis sativus GN=Csa_4G095600 PE=3 SV=1[more]
V4SW89_9ROSI1.3e-5274.71Uncharacterized protein OS=Citrus clementina GN=CICLE_v10026623mg PE=3 SV=1[more]
A0A067ERN3_CITSI1.3e-5274.71Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g030809mg PE=3 SV=1[more]
F6HWM0_VITVI9.0e-5174.56Putative uncharacterized protein OS=Vitis vinifera GN=VIT_07s0141g00200 PE=3 SV=... [more]
A0A061DI09_THECC1.2e-5072.94Ribosomal L29 family protein OS=Theobroma cacao GN=TCM_001105 PE=3 SV=1[more]
BLAST of CmaCh04G008280 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G65220.14.1e-4767.26 Ribosomal L29 family protein [more]
BLAST of CmaCh04G008280 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449438829|ref|XP_004137190.1|2.3e-6889.41PREDICTED: 50S ribosomal protein L29, chloroplastic [Cucumis sativus][more]
gi|659111132|ref|XP_008455595.1|6.8e-6888.82PREDICTED: 50S ribosomal protein L29, chloroplastic [Cucumis melo][more]
gi|694437160|ref|XP_009345632.1|8.1e-5374.56PREDICTED: 50S ribosomal protein L29, chloroplastic-like [Pyrus x bretschneideri... [more]
gi|641837594|gb|KDO56545.1|1.8e-5274.71hypothetical protein CISIN_1g030809mg [Citrus sinensis][more]
gi|729450197|ref|XP_010523326.1|1.8e-5275.29PREDICTED: 50S ribosomal protein L29, chloroplastic [Tarenaya hassleriana][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001854Ribosomal_L29/L35
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
GO:0005840ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006354 DNA-templated transcription, elongation
biological_process GO:0045893 positive regulation of transcription, DNA-templated
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0042793 transcription from plastid promoter
biological_process GO:0006412 translation
cellular_component GO:0009941 chloroplast envelope
cellular_component GO:0009570 chloroplast stroma
cellular_component GO:0009295 nucleoid
cellular_component GO:0005840 ribosome
cellular_component GO:0005622 intracellular
cellular_component GO:0022625 cytosolic large ribosomal subunit
molecular_function GO:0003735 structural constituent of ribosome
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh04G008280.1CmaCh04G008280.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001854Ribosomal protein L29GENE3DG3DSA:1.10.287.310coord: 64..125
score: 3.2
IPR001854Ribosomal protein L29HAMAPMF_00374Ribosomal_L29coord: 62..121
score: 1
IPR001854Ribosomal protein L29PFAMPF00831Ribosomal_L29coord: 65..121
score: 7.0
IPR001854Ribosomal protein L29TIGRFAMsTIGR00012TIGR00012coord: 66..121
score: 3.1
IPR001854Ribosomal protein L29unknownSSF46561Ribosomal protein L29 (L29p)coord: 64..124
score: 3.92
NoneNo IPR availableunknownCoilCoilcoord: 151..168
scor
NoneNo IPR availablePANTHERPTHR1091660S RIBOSOMAL PROTEIN L35/50S RIBOSOMAL PROTEIN L29coord: 3..164
score: 1.4

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmaCh04G008280Cucsa.273030Cucumber (Gy14) v1cgycmaB0767
CmaCh04G008280Cla004837Watermelon (97103) v1cmawmB654
CmaCh04G008280Csa4G095600Cucumber (Chinese Long) v2cmacuB711
CmaCh04G008280ClCG10G008830Watermelon (Charleston Gray)cmawcgB614
CmaCh04G008280CSPI04G08690Wild cucumber (PI 183967)cmacpiB717
CmaCh04G008280CmoCh04G008850Cucurbita moschata (Rifu)cmacmoB728
CmaCh04G008280CmoCh16G007730Cucurbita moschata (Rifu)cmacmoB700
CmaCh04G008280Lsi03G009220Bottle gourd (USVL1VR-Ls)cmalsiB664
CmaCh04G008280Cp4.1LG14g01040Cucurbita pepo (Zucchini)cmacpeB714
CmaCh04G008280Cp4.1LG01g09230Cucurbita pepo (Zucchini)cmacpeB720
CmaCh04G008280CsaV3_4G008900Cucumber (Chinese Long) v3cmacucB0845
CmaCh04G008280Cla97C10G192140Watermelon (97103) v2cmawmbB718
CmaCh04G008280Bhi11G000826Wax gourdcmawgoB0822
CmaCh04G008280CsGy4G008520Cucumber (Gy14) v2cgybcmaB544
CmaCh04G008280Carg14228Silver-seed gourdcarcmaB1288
CmaCh04G008280Carg05831Silver-seed gourdcarcmaB1414
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CmaCh04G008280CmaCh16G007170Cucurbita maxima (Rimu)cmacmaB350
The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh04G008280Cucurbita maxima (Rimu)cmacmaB546
CmaCh04G008280Cucurbita moschata (Rifu)cmacmoB727
CmaCh04G008280Wild cucumber (PI 183967)cmacpiB785
CmaCh04G008280Melon (DHL92) v3.5.1cmameB698
CmaCh04G008280Melon (DHL92) v3.5.1cmameB710
CmaCh04G008280Watermelon (Charleston Gray)cmawcgB639
CmaCh04G008280Watermelon (97103) v1cmawmB715
CmaCh04G008280Cucurbita pepo (Zucchini)cmacpeB702
CmaCh04G008280Cucurbita pepo (Zucchini)cmacpeB741
CmaCh04G008280Bottle gourd (USVL1VR-Ls)cmalsiB639
CmaCh04G008280Melon (DHL92) v3.6.1cmamedB788
CmaCh04G008280Melon (DHL92) v3.6.1cmamedB804
CmaCh04G008280Cucumber (Chinese Long) v3cmacucB0917
CmaCh04G008280Watermelon (97103) v2cmawmbB712
CmaCh04G008280Wax gourdcmawgoB0883