Carg14228 (gene) Silver-seed gourd

Overview
NameCarg14228
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
Description50S ribosomal protein L29, chloroplastic
LocationCucurbita_argyrosperma_scaffold_045 : 688587 .. 690478 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATAAACCTTTCAATTGCTTCGCCTTCGAGCGTTTCGTTCCCTTCTAAATTTCTTAGCTCGACCTCCAAATCCTCCTTCAATGGCCGTCAAATCCGGTTCCCATTTTCGTTTCGCGTTCCTCCTAAAACAGCATCTACCGGAGGCCGCAATTCGTCGGTGGTAATGATGGCGAAGAGGGAGGAGGAGTTGAAGGAAATCAGAACGAAAACTACTGAGGAAATAAACGAAGAGGTCATCGATCTTAAGGGTGAACTTCTTATGCTTCGGCTTCAGAAATCAGCTCGCAATGAGTTTAAGTCCAGCGAATTCCGCCGCATGCGCAAACGGGTAATTTTCTCCCTTATTGATAGATTCTTAATCAACTTTGAGTTCTATTATAATGTGGCTTTTTTGTTCGTCTTTAATTTATAATCTATGCGAAGTATATTTTAAGTCGTACAGTCTCCCATTCTCCACATTTCTGCTTATTTTGTGCTAAATTTAATGGTCGGCTTGAAATTTTGGCTCATTTGTTTCCAATGGGGTTTTGTAGCTGTTGAATCTAAGATTATTGCCTATTATTTGCCGCCAAAATGAAAGACGAGTAGCAAATTAACGTATGAAAAGTAAAAAGAAAAAAGAACCTCGAACGATATGTTTCACCATGTTGGGAAAAGCTTAGAGAAGCTGCATTTGAAGGAAATAGAAAAACCAATGCAATTAGGGGGCCAGTTAGAGCTGCTCTGCAACTTAGAAATTCAATTAGAATCAAGAAAGGTAATCGAAATTGGGATTTCTGGGCATTAAAAACTTCGCATTCGACTAGTATTAACTCCAAATTTTGTATACGTTTAGCACCTGTCTTCAAAAAAACTCTTCAATGTCTTCCTGCTAACATTTTATCTAAGATTCCCAAAATTCCGGAAGCATGAATGAGCCTATAAATGTGGAAATGACAATTCCATAGAAGATGTTATTTGATAAACTAAACCTATTCTGATCACGAAGCATCACAATGTTGAATGTATAGAGAGAGCCATTTGCATTTGAACAATATGTAGCCTTCTCATGACTTTTGTATCAAAGTTCTTCCTGCTTAGTGCATTACATGGATGTCGGAATTGTTTGCTGGGCCTCTCACTGTAATATGCTTGTTCTATTTGTAAGACTTGCCATTCTCATAGTTTCGTCGTGACGAGTCTGAGGATTTAGGAAGCGAACTCTTTTCATTTATAGTTGAATTCCACACCTTCATGATAAGTTTAGATGCTCATAGTTACCCTCTTAAGGGTTGGTTCTGGATTCCAACTCGACAACTTACCGATTAAAATCCTTCCTTACCGTCTAGCCTGCTCGAAAATTGGTAGTGTGGATCATGAATATGGGAGTGGGGCTTGATGATCAATATAGTATTGCAGAGATCGATTAATATATTTGCTGATGCAGGACAGTTTGGAAGTTTATATAGTATATGGGTCCTGTCTCCTTCTTGTTATTCTTTATCTCCACACACTTTCGGTTTTGCGACATTGTCGCTATACATCCATTTTTCTTCTTTTTCTCCTCTTTCTCCAAGTTATCAATCTTTTAACCTTGAACTCGTGGTTGGAATATATGCCTTAACTAATTGAGCTATGCTTAATTTGGGAGCTATACATCGAATATTTGGACTTAGCCCAACAATTTTGGTTTTGTTTCTCTTATACATCCATGAAACTTGGAGTTTTGTGCAGATTGCTCGGATGCTAACCGTGAAACGTGAAAGAGAGATTGAAGAGGGAGTGGGCAAAAGGCTGTCAAGAAAGCTAGACAGAAAGTGGAAGAGAAGTATTGTGGTCAGACCACCTCCATCTTTGAAGAAGTTGCGAGAGGAAGAAGCAGCCGCTGAAGAAGCTGAGAAATCTGCTTGA

mRNA sequence

ATGATAAACCTTTCAATTGCTTCGCCTTCGAGCGTTTCGTTCCCTTCTAAATTTCTTAGCTCGACCTCCAAATCCTCCTTCAATGGCCGTCAAATCCGGTTCCCATTTTCGTTTCGCGTTCCTCCTAAAACAGCATCTACCGGAGGCCGCAATTCGTCGGTGGTAATGATGGCGAAGAGGGAGGAGGAGTTGAAGGAAATCAGAACGAAAACTACTGAGGAAATAAACGAAGAGGTCATCGATCTTAAGGGTGAACTTCTTATGCTTCGGCTTCAGAAATCAGCTCGCAATGAGTTTAAGTCCAGCGAATTCCGCCGCATGCGCAAACGGATTGCTCGGATGCTAACCGTGAAACGTGAAAGAGAGATTGAAGAGGGAGTGGGCAAAAGGCTGTCAAGAAAGCTAGACAGAAAGTGGAAGAGAAGTATTGTGGTCAGACCACCTCCATCTTTGAAGAAGTTGCGAGAGGAAGAAGCAGCCGCTGAAGAAGCTGAGAAATCTGCTTGA

Coding sequence (CDS)

ATGATAAACCTTTCAATTGCTTCGCCTTCGAGCGTTTCGTTCCCTTCTAAATTTCTTAGCTCGACCTCCAAATCCTCCTTCAATGGCCGTCAAATCCGGTTCCCATTTTCGTTTCGCGTTCCTCCTAAAACAGCATCTACCGGAGGCCGCAATTCGTCGGTGGTAATGATGGCGAAGAGGGAGGAGGAGTTGAAGGAAATCAGAACGAAAACTACTGAGGAAATAAACGAAGAGGTCATCGATCTTAAGGGTGAACTTCTTATGCTTCGGCTTCAGAAATCAGCTCGCAATGAGTTTAAGTCCAGCGAATTCCGCCGCATGCGCAAACGGATTGCTCGGATGCTAACCGTGAAACGTGAAAGAGAGATTGAAGAGGGAGTGGGCAAAAGGCTGTCAAGAAAGCTAGACAGAAAGTGGAAGAGAAGTATTGTGGTCAGACCACCTCCATCTTTGAAGAAGTTGCGAGAGGAAGAAGCAGCCGCTGAAGAAGCTGAGAAATCTGCTTGA

Protein sequence

MINLSIASPSSVSFPSKFLSSTSKSSFNGRQIRFPFSFRVPPKTASTGGRNSSVVMMAKREEELKEIRTKTTEEINEEVIDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVKREREIEEGVGKRLSRKLDRKWKRSIVVRPPPSLKKLREEEAAAEEAEKSA
Homology
[Close]
BLAST of Carg14228 vs. NCBI nr
Match: XP_022941582.1 (50S ribosomal protein L29, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 266.2 bits (679), Expect = 7.8e-68
Identity = 168/168 (100.00%), Postives = 168/168 (100.00%), Query Frame = 0 

Query: 1   MINLSIASPSSVSFPSKFLSSTSKSSFNGRQIRFPFSFRVPPKTASTGGRNSSVVMMAKR 60
           MINLSIASPSSVSFPSKFLSSTSKSSFNGRQIRFPFSFRVPPKTASTGGRNSSVVMMAKR
Sbjct: 1   MINLSIASPSSVSFPSKFLSSTSKSSFNGRQIRFPFSFRVPPKTASTGGRNSSVVMMAKR 60

Query: 61  EEELKEIRTKTTEEINEEVIDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVKRE 120
           EEELKEIRTKTTEEINEEVIDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVKRE
Sbjct: 61  EEELKEIRTKTTEEINEEVIDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVKRE 120

Query: 121 REIEEGVGKRLSRKLDRKWKRSIVVRXXXXXXXXXXXXXXXXXAEKSA 169
           REIEEGVGKRLSRKLDRKWKRSIVVRXXXXXXXXXXXXXXXXXAEKSA
Sbjct: 121 REIEEGVGKRLSRKLDRKWKRSIVVRXXXXXXXXXXXXXXXXXAEKSA 168

[Close]
BLAST of Carg14228 vs. NCBI nr
Match: XP_022977189.1 (50S ribosomal protein L29, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 265.0 bits (676), Expect = 1.7e-67
Identity = 167/168 (99.40%), Postives = 168/168 (100.00%), Query Frame = 0 

Query: 1   MINLSIASPSSVSFPSKFLSSTSKSSFNGRQIRFPFSFRVPPKTASTGGRNSSVVMMAKR 60
           M+NLSIASPSSVSFPSKFLSSTSKSSFNGRQIRFPFSFRVPPKTASTGGRNSSVVMMAKR
Sbjct: 1   MMNLSIASPSSVSFPSKFLSSTSKSSFNGRQIRFPFSFRVPPKTASTGGRNSSVVMMAKR 60

Query: 61  EEELKEIRTKTTEEINEEVIDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVKRE 120
           EEELKEIRTKTTEEINEEVIDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVKRE
Sbjct: 61  EEELKEIRTKTTEEINEEVIDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVKRE 120

Query: 121 REIEEGVGKRLSRKLDRKWKRSIVVRXXXXXXXXXXXXXXXXXAEKSA 169
           REIEEGVGKRLSRKLDRKWKRSIVVRXXXXXXXXXXXXXXXXXAEKSA
Sbjct: 121 REIEEGVGKRLSRKLDRKWKRSIVVRXXXXXXXXXXXXXXXXXAEKSA 168

[Close]
BLAST of Carg14228 vs. NCBI nr
Match: XP_023531622.1 (50S ribosomal protein L29, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 263.8 bits (673), Expect = 3.9e-67
Identity = 167/168 (99.40%), Postives = 167/168 (99.40%), Query Frame = 0 

Query: 1   MINLSIASPSSVSFPSKFLSSTSKSSFNGRQIRFPFSFRVPPKTASTGGRNSSVVMMAKR 60
           MINLSIASPSSVSFPSKFLSSTSKSSFNGRQIRFPFSFRVPPKTASTGGRNS VVMMAKR
Sbjct: 1   MINLSIASPSSVSFPSKFLSSTSKSSFNGRQIRFPFSFRVPPKTASTGGRNSLVVMMAKR 60

Query: 61  EEELKEIRTKTTEEINEEVIDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVKRE 120
           EEELKEIRTKTTEEINEEVIDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVKRE
Sbjct: 61  EEELKEIRTKTTEEINEEVIDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVKRE 120

Query: 121 REIEEGVGKRLSRKLDRKWKRSIVVRXXXXXXXXXXXXXXXXXAEKSA 169
           REIEEGVGKRLSRKLDRKWKRSIVVRXXXXXXXXXXXXXXXXXAEKSA
Sbjct: 121 REIEEGVGKRLSRKLDRKWKRSIVVRXXXXXXXXXXXXXXXXXAEKSA 168

[Close]
BLAST of Carg14228 vs. NCBI nr
Match: XP_023551880.1 (50S ribosomal protein L29, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 243.0 bits (619), Expect = 7.0e-61
Identity = 153/168 (91.07%), Postives = 159/168 (94.64%), Query Frame = 0 

Query: 1   MINLSIASPSSVSFPSKFLSSTSKSSFNGRQIRFPFSFRVPPKTASTGGRNSSVVMMAKR 60
           M+NLSIASPSSV+ P+KFLSSTSKSSF+G QIRFPFSFRVPPK A TGGR S VVMMAKR
Sbjct: 1   MMNLSIASPSSVAIPAKFLSSTSKSSFHGLQIRFPFSFRVPPKAACTGGRISPVVMMAKR 60

Query: 61  EEELKEIRTKTTEEINEEVIDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVKRE 120
           EEELK+IR KTTEEINEEV+DLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVKRE
Sbjct: 61  EEELKDIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVKRE 120

Query: 121 REIEEGVGKRLSRKLDRKWKRSIVVRXXXXXXXXXXXXXXXXXAEKSA 169
           REIEEGVGKRLSRKLDRKWKRSIVVR XXXXXXXXXXXXXXX AEKSA
Sbjct: 121 REIEEGVGKRLSRKLDRKWKRSIVVRPXXXXXXXXXXXXXXXAAEKSA 168

[Close]
BLAST of Carg14228 vs. NCBI nr
Match: XP_022929361.1 (50S ribosomal protein L29, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 240.4 bits (612), Expect = 4.6e-60
Identity = 132/145 (91.03%), Postives = 138/145 (95.17%), Query Frame = 0 

Query: 1   MINLSIASPSSVSFPSKFLSSTSKSSFNGRQIRFPFSFRVPPKTASTGGRNSSVVMMAKR 60
           M+NLSIASPSSV+ P+KFLSSTSKSSFNG QIRFPFS RVPPK A TGGRNS VVMMAKR
Sbjct: 1   MMNLSIASPSSVAIPAKFLSSTSKSSFNGLQIRFPFSCRVPPKAACTGGRNSPVVMMAKR 60

Query: 61  EEELKEIRTKTTEEINEEVIDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVKRE 120
           EEELK+IR KTTEEINEEV+DLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVKRE
Sbjct: 61  EEELKDIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVKRE 120

Query: 121 REIEEGVGKRLSRKLDRKWKRSIVV 146
           REIEEGVGKRLSRKLDRKWK+SIVV
Sbjct: 121 REIEEGVGKRLSRKLDRKWKKSIVV 145

[Close]
BLAST of Carg14228 vs. TAIR10
Match: AT5G65220.1 (Ribosomal L29 family protein )

HSP 1 Score: 159.1 bits (401), Expect = 2.4e-39
Identity = 97/149 (65.10%), Postives = 120/149 (80.54%), Query Frame = 0 

Query: 1   MINLSIASPSSVS-FPSKFLSSTS-KSSFNGRQIRFPFSFRVP-PKTASTGGRNSSVVMM 60
           M++LSIA+P + + F     S+TS  SSF+G +I+   S RVP   T S+     SVVMM
Sbjct: 1   MLSLSIATPGTAAIFRRGTASATSTSSSFHGVRIQHQVSARVPAAATISSSSPKPSVVMM 60

Query: 61  AKREEELKEIRTKTTEEINEEVIDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTV 120
           +KRE ELKEIR+KTTE++ EEV+DLKGEL MLRLQKSARNEFKSS+FRRM+K++ARMLTV
Sbjct: 61  SKREAELKEIRSKTTEQLQEEVVDLKGELFMLRLQKSARNEFKSSDFRRMKKQVARMLTV 120

Query: 121 KREREIEEGVGKRLSRKLDRKWKRSIVVR 147
           KREREI+EG+ KRLSRKLDR+WK+SIV R
Sbjct: 121 KREREIKEGIKKRLSRKLDRQWKKSIVPR 149

[Close]
BLAST of Carg14228 vs. Swiss-Prot
Match: sp|Q9FJP3|RK29_ARATH (50S ribosomal protein L29, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL29 PE=1 SV=1)

HSP 1 Score: 159.1 bits (401), Expect = 4.4e-38
Identity = 97/149 (65.10%), Postives = 120/149 (80.54%), Query Frame = 0 

Query: 1   MINLSIASPSSVS-FPSKFLSSTS-KSSFNGRQIRFPFSFRVP-PKTASTGGRNSSVVMM 60
           M++LSIA+P + + F     S+TS  SSF+G +I+   S RVP   T S+     SVVMM
Sbjct: 1   MLSLSIATPGTAAIFRRGTASATSTSSSFHGVRIQHQVSARVPAAATISSSSPKPSVVMM 60

Query: 61  AKREEELKEIRTKTTEEINEEVIDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTV 120
           +KRE ELKEIR+KTTE++ EEV+DLKGEL MLRLQKSARNEFKSS+FRRM+K++ARMLTV
Sbjct: 61  SKREAELKEIRSKTTEQLQEEVVDLKGELFMLRLQKSARNEFKSSDFRRMKKQVARMLTV 120

Query: 121 KREREIEEGVGKRLSRKLDRKWKRSIVVR 147
           KREREI+EG+ KRLSRKLDR+WK+SIV R
Sbjct: 121 KREREIKEGIKKRLSRKLDRQWKKSIVPR 149

[Close]
BLAST of Carg14228 vs. Swiss-Prot
Match: sp|P82248|RK29_SPIOL (50S ribosomal protein L29, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL29 PE=1 SV=2)

HSP 1 Score: 140.6 bits (353), Expect = 1.6e-32
Identity = 81/127 (63.78%), Postives = 100/127 (78.74%), Query Frame = 0 

Query: 23  SKSSFNGRQ---IRFPFSFRVPPKTASTGGRNSSVVMMAKREEELKEIRTKTTEEINEEV 82
           +KSSF+G +   +    S R+  +T       SSVV+M K+E+ELKE+RTKT E++NEE+
Sbjct: 26  TKSSFHGLRLPSVNLSSSLRLRVQTPP-----SSVVVMVKKEDELKELRTKTNEQLNEEI 85

Query: 83  IDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVKREREIEEGVGKRLSRKLDRKW 142
           + LKGEL MLRLQ+SAR  FK S+F RMRKR+ARMLTVKREREIE+GVGKRLSRKLD+ W
Sbjct: 86  LQLKGELFMLRLQRSARENFKPSDFGRMRKRVARMLTVKREREIEQGVGKRLSRKLDKAW 145

Query: 143 KRSIVVR 147
           KRSIVVR
Sbjct: 146 KRSIVVR 147

[Close]
BLAST of Carg14228 vs. Swiss-Prot
Match: sp|Q9SWI6|RK29_MAIZE (50S ribosomal protein L29, chloroplastic OS=Zea mays OX=4577 GN=RPL29 PE=2 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 1.8e-23
Identity = 58/70 (82.86%), Postives = 66/70 (94.29%), Query Frame = 0 

Query: 77  EEVIDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVKREREIEEGVGKRLSRKLD 136
           EEV+DLKGEL +LRL++SAR EFK+SEF RMRKRIARMLTVKREREIE+G+ KRLSRKLD
Sbjct: 81  EEVVDLKGELFLLRLKRSARQEFKNSEFSRMRKRIARMLTVKREREIEQGINKRLSRKLD 140

Query: 137 RKWKRSIVVR 147
           RKWK+SIVVR
Sbjct: 141 RKWKQSIVVR 150

[Close]
BLAST of Carg14228 vs. Swiss-Prot
Match: sp|Q49ZG0|RL29_STAS1 (50S ribosomal protein L29 OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) OX=342451 GN=rpmC PE=3 SV=1)

HSP 1 Score: 47.0 bits (110), Expect = 2.4e-04
Identity = 30/62 (48.39%), Postives = 39/62 (62.90%), Query Frame = 0 

Query: 65  KEIRTKTTEEINEEVIDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVKREREIE 124
           KEIR  TT EI E++   K EL  LR Q +     +++  R +RK IAR+ TV REREIE
Sbjct: 4   KEIRDLTTSEIEEQIKSSKEELFNLRFQLATGQLEETARIRTVRKTIARLKTVAREREIE 63

Query: 125 EG 127
           +G
Sbjct: 64  QG 65

[Close]
BLAST of Carg14228 vs. Swiss-Prot
Match: sp|B8HMR2|RL29_CYAP4 (50S ribosomal protein L29 OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) OX=395961 GN=rpmC PE=3 SV=1)

HSP 1 Score: 45.4 bits (106), Expect = 7.1e-04
Identity = 20/63 (31.75%), Postives = 45/63 (71.43%), Query Frame = 0 

Query: 63  ELKEIRTKTTEEINEEVIDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVKRERE 122
           ++K++   +  E+  +++DLK +L  LRLQK+ R E K  +F+ +R ++A+++T++R+R+
Sbjct: 5   KMKDLLDLSDAEVETQILDLKRQLFQLRLQKATRQEVKPHQFKHLRHQLAQLMTLERQRQ 64

Query: 123 IEE 126
           + +
Sbjct: 65  LTQ 67

[Close]
BLAST of Carg14228 vs. TrEMBL
Match: tr|A0A0A0KVL7|A0A0A0KVL7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G095600 PE=3 SV=1)

HSP 1 Score: 228.4 bits (581), Expect = 1.2e-56
Identity = 150/170 (88.24%), Postives = 161/170 (94.71%), Query Frame = 0 

Query: 1   MINLSIAS-PSSVSFPSKFLSSTSKSSFNGRQIRFPFSFRVPPKTASTG-GRNSSVVMMA 60
           MINLSIAS PS++  PSKFL+STSKSSFN  QIRFPFSFR+PPKTA+TG GRNSSVVMMA
Sbjct: 1   MINLSIASLPSTLPIPSKFLNSTSKSSFNALQIRFPFSFRLPPKTATTGRGRNSSVVMMA 60

Query: 61  KREEELKEIRTKTTEEINEEVIDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVK 120
           KRE+ELK+IR+KTTEEINEEVIDLKGELLMLRLQKSARNEFKSSEFRRMRKRI+RMLTV+
Sbjct: 61  KREDELKDIRSKTTEEINEEVIDLKGELLMLRLQKSARNEFKSSEFRRMRKRISRMLTVR 120

Query: 121 REREIEEGVGKRLSRKLDRKWKRSIVVRXXXXXXXXXXXXXXXXXAEKSA 169
           REREIEEGVGKRLSRKLDRKWK+SI   XXXXXXXXXXXXXXXXXAEKSA
Sbjct: 121 REREIEEGVGKRLSRKLDRKWKKSIXXXXXXXXXXXXXXXXXXXXAEKSA 170

[Close]
BLAST of Carg14228 vs. TrEMBL
Match: tr|A0A2I4FS65|A0A2I4FS65_9ROSI (50S ribosomal protein L29, chloroplastic OS=Juglans regia OX=51240 GN=LOC109001589 PE=3 SV=1)

HSP 1 Score: 189.1 bits (479), Expect = 8.0e-45
Identity = 109/145 (75.17%), Postives = 122/145 (84.14%), Query Frame = 0 

Query: 1   MINLSIASPSSVSFPSKFLSSTSKSSFNGRQIRFPFSFRVPPKTASTGGRNSSVVMMAKR 60
           M++L IAS SS+SF S+      K SFNG +I    + RVPP+TAS    +SSVVMMAKR
Sbjct: 1   MLSLPIASSSSISFSSQPRFPIFKFSFNGAKIPHISTIRVPPQTASFRNPSSSVVMMAKR 60

Query: 61  EEELKEIRTKTTEEINEEVIDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVKRE 120
           EEE+ EIR KTTEEINEEV+DLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLT+KRE
Sbjct: 61  EEEINEIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTIKRE 120

Query: 121 REIEEGVGKRLSRKLDRKWKRSIVV 146
           REIEEG+ KRLSRKLDRKWK+SIVV
Sbjct: 121 REIEEGINKRLSRKLDRKWKKSIVV 145

[Close]
BLAST of Carg14228 vs. TrEMBL
Match: tr|A0A1Q3CV21|A0A1Q3CV21_CEPFO (Ribosomal_L29 domain-containing protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_27348 PE=3 SV=1)

HSP 1 Score: 185.3 bits (469), Expect = 1.2e-43
Identity = 108/147 (73.47%), Postives = 128/147 (87.07%), Query Frame = 0 

Query: 1   MINLSIASPSSVSFPSKFLSSTSKSSFNGRQIRFPFSFRVPPKTAS-TGGRNSSVVMMAK 60
           M++LSIASPS+++FPSK + +  +SSFNG QIR     R+ P+T S +    SSVVMMAK
Sbjct: 1   MLSLSIASPSTITFPSKHI-TLPRSSFNGIQIR---HIRLLPRTMSCSRTAPSSVVMMAK 60

Query: 61  REEELKEIRTKTTEEINEEVIDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVKR 120
           REEE+KEIR KTTEEINEEVIDLKGEL MLRLQ+SARNEFKSS+FRRMRKR+ARMLTVKR
Sbjct: 61  REEEMKEIRAKTTEEINEEVIDLKGELFMLRLQRSARNEFKSSDFRRMRKRVARMLTVKR 120

Query: 121 EREIEEGVGKRLSRKLDRKWKRSIVVR 147
           ERE+EEG+GKRLSRKLDR+WK+SIV+R
Sbjct: 121 ERELEEGIGKRLSRKLDRQWKKSIVLR 143

[Close]
BLAST of Carg14228 vs. TrEMBL
Match: tr|A0A2N9IXK7|A0A2N9IXK7_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS56906 PE=3 SV=1)

HSP 1 Score: 178.3 bits (451), Expect = 1.4e-41
Identity = 127/170 (74.71%), Postives = 141/170 (82.94%), Query Frame = 0 

Query: 1   MINLSIASPSSVSFPSKFLSSTSKSSFNGRQI-RFPFSFRVPPKTAS-TGGRNSSVVMMA 60
           M++LSIASPS+++FP K      KS+FNG +I +      VPP+ AS      SSVVMMA
Sbjct: 1   MLSLSIASPSTITFPPKTHFPIPKSTFNGIKIQKHHCPIHVPPQAASFRNASASSVVMMA 60

Query: 61  KREEELKEIRTKTTEEINEEVIDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVK 120
           KREEELKEIR KTTEEINEEV+DLKGELLMLRLQKSARNEFKSSEF RMRKRIARMLTVK
Sbjct: 61  KREEELKEIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFKSSEFGRMRKRIARMLTVK 120

Query: 121 REREIEEGVGKRLSRKLDRKWKRSIVVRXXXXXXXXXXXXXXXXXAEKSA 169
           RERE+EEG+ KRLSRKLDR+WK+S    XXXXXXXXXXXXXXXXXAEKSA
Sbjct: 121 REREVEEGINKRLSRKLDRQWKKSXXXXXXXXXXXXXXXXXXXXXAEKSA 170

[Close]
BLAST of Carg14228 vs. TrEMBL
Match: tr|A0A1S3C2I8|A0A1S3C2I8_CUCME (50S ribosomal protein L29, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103495732 PE=3 SV=1)

HSP 1 Score: 177.9 bits (450), Expect = 1.8e-41
Identity = 128/170 (75.29%), Postives = 137/170 (80.59%), Query Frame = 0 

Query: 1   MINLSIAS-PSSVSFPSKFLSSTSKSSFNGRQIRFPFSFRVP-PKTASTGGRNSSVVMMA 60
           MINLS+AS PS++  PSKFL+STSKS FNG QIRFPFSF VP                  
Sbjct: 1   MINLSVASLPSALPIPSKFLNSTSKSFFNGLQIRFPFSFCVPXXXXXXXXXXXXXXXXXX 60

Query: 61  KREEELKEIRTKTTEEINEEVIDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVK 120
                LK+IR KTTEEINEEV+DLKGELLMLRLQKSARNEFKSSEFRRMRKRI+RMLTVK
Sbjct: 61  XXXXXLKDIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFKSSEFRRMRKRISRMLTVK 120

Query: 121 REREIEEGVGKRLSRKLDRKWKRSIVVRXXXXXXXXXXXXXXXXXAEKSA 169
           REREIEEGVGKR+SRKLDRKWK+SI   XXXXXXXXXXXXXXXXXAEKSA
Sbjct: 121 REREIEEGVGKRMSRKLDRKWKKSIXXXXXXXXXXXXXXXXXXXXAEKSA 170

The following BLAST results are available for this feature:
BLAST of Carg14228 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022941582.17.8e-68100.0050S ribosomal protein L29, chloroplastic-like [Cucurbita moschata][more]
XP_022977189.11.7e-6799.4050S ribosomal protein L29, chloroplastic-like [Cucurbita maxima][more]
XP_023531622.13.9e-6799.4050S ribosomal protein L29, chloroplastic-like [Cucurbita pepo subsp. pepo][more]
XP_023551880.17.0e-6191.0750S ribosomal protein L29, chloroplastic-like [Cucurbita pepo subsp. pepo][more]
XP_022929361.14.6e-6091.0350S ribosomal protein L29, chloroplastic-like [Cucurbita moschata][more]
BLAST of Carg14228 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G65220.12.4e-3965.10Ribosomal L29 family protein [more]
BLAST of Carg14228 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q9FJP3|RK29_ARATH4.4e-3865.1050S ribosomal protein L29, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL2... [more]
sp|P82248|RK29_SPIOL1.6e-3263.7850S ribosomal protein L29, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL29 P... [more]
sp|Q9SWI6|RK29_MAIZE1.8e-2382.8650S ribosomal protein L29, chloroplastic OS=Zea mays OX=4577 GN=RPL29 PE=2 SV=1[more]
sp|Q49ZG0|RL29_STAS12.4e-0448.3950S ribosomal protein L29 OS=Staphylococcus saprophyticus subsp. saprophyticus (... [more]
sp|B8HMR2|RL29_CYAP47.1e-0431.7550S ribosomal protein L29 OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) OX=39... [more]
BLAST of Carg14228 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KVL7|A0A0A0KVL7_CUCSA1.2e-5688.24Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G095600 PE=3 SV=1[more]
tr|A0A2I4FS65|A0A2I4FS65_9ROSI8.0e-4575.1750S ribosomal protein L29, chloroplastic OS=Juglans regia OX=51240 GN=LOC1090015... [more]
tr|A0A1Q3CV21|A0A1Q3CV21_CEPFO1.2e-4373.47Ribosomal_L29 domain-containing protein OS=Cephalotus follicularis OX=3775 GN=CF... [more]
tr|A0A2N9IXK7|A0A2N9IXK7_FAGSY1.4e-4174.71Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS56906 PE=3 SV=1[more]
tr|A0A1S3C2I8|A0A1S3C2I8_CUCME1.8e-4175.2950S ribosomal protein L29, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103495732... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
GO:0005840ribosome
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: INTERPRO
TermDefinition
IPR036049Ribosomal_L29/L35_sf
IPR001854Ribosomal_L29/L35
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006412 translation
cellular_component GO:0005840 ribosome
cellular_component GO:0005622 intracellular
molecular_function GO:0003735 structural constituent of ribosome
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg14228-RACarg14228-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001854Ribosomal protein L29/L35TIGRFAMTIGR00012TIGR00012coord: 66..121
e-value: 3.1E-16
score: 57.1
IPR001854Ribosomal protein L29/L35PFAMPF00831Ribosomal_L29coord: 65..121
e-value: 7.1E-14
score: 51.4
IPR001854Ribosomal protein L29/L35HAMAPMF_00374Ribosomal_L29coord: 62..121
score: 13.55
NoneNo IPR availableGENE3DG3DSA:1.10.287.310coord: 63..127
e-value: 2.4E-14
score: 54.9
NoneNo IPR availablePANTHERPTHR1091660S RIBOSOMAL PROTEIN L35/50S RIBOSOMAL PROTEIN L29coord: 52..157
NoneNo IPR availableCDDcd00427Ribosomal_L29_HIPcoord: 65..121
e-value: 2.56551E-15
score: 65.9718
IPR036049Ribosomal protein L29/L35 superfamilySUPERFAMILYSSF46561Ribosomal protein L29 (L29p)coord: 64..124

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg14228Cla004837Watermelon (97103) v1carwmB0939
Carg14228Csa4G095600Cucumber (Chinese Long) v2carcuB0956
Carg14228ClCG10G008830Watermelon (Charleston Gray)carwcgB0914
Carg14228CSPI04G08690Wild cucumber (PI 183967)carcpiB0979
Carg14228Cucsa.273030Cucumber (Gy14) v1carcgyB1062
Carg14228CmaCh04G008280Cucurbita maxima (Rimu)carcmaB1288
Carg14228CmaCh16G007170Cucurbita maxima (Rimu)carcmaB1286
Carg14228CmoCh16G007730Cucurbita moschata (Rifu)carcmoB1258
Carg14228CmoCh04G008850Cucurbita moschata (Rifu)carcmoB1259
Carg14228Lsi03G009220Bottle gourd (USVL1VR-Ls)carlsiB856
Carg14228Cp4.1LG01g09230Cucurbita pepo (Zucchini)carcpeB1302
Carg14228Cp4.1LG14g01040Cucurbita pepo (Zucchini)carcpeB1301
Carg14228CsGy4G008520Cucumber (Gy14) v2carcgybB0929
Carg14228CsaV3_4G008900Cucumber (Chinese Long) v3carcucB0981
Carg14228Cla97C10G192140Watermelon (97103) v2carwmbB0988
Carg14228Bhi11G000826Wax gourdcarwgoB1085
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Carg14228Carg05831Silver-seed gourdcarcarB646
The following block(s) are covering this gene:
GeneOrganismBlock
Carg14228Wax gourdcarwgoB1088
Carg14228Silver-seed gourdcarcarB602
Carg14228Cucumber (Gy14) v2carcgybB0932
Carg14228Cucumber (Gy14) v1carcgyB1058
Carg14228Cucurbita maxima (Rimu)carcmaB1287
Carg14228Cucurbita maxima (Rimu)carcmaB1289
Carg14228Cucurbita pepo (Zucchini)carcpeB1300
Carg14228Cucurbita pepo (Zucchini)carcpeB1304
Carg14228Wild cucumber (PI 183967)carcpiB0982
Carg14228Cucumber (Chinese Long) v2carcuB0959
Carg14228Cucumber (Chinese Long) v3carcucB0987
Carg14228Bottle gourd (USVL1VR-Ls)carlsiB855
Carg14228Melon (DHL92) v3.5.1carmeB0926
Carg14228Melon (DHL92) v3.5.1carmeB0925
Carg14228Melon (DHL92) v3.6.1carmedB0931
Carg14228Melon (DHL92) v3.6.1carmedB0932
Carg14228Watermelon (Charleston Gray)carwcgB0915
Carg14228Watermelon (97103) v1carwmB0942
Carg14228Watermelon (97103) v2carwmbB0987