MELO3C018954 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C018954
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
Description50S ribosomal protein L29
Locationchr7 : 14001083 .. 14003390 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
GCGTAAATAGGGGTAAGAGGGGTAATAGGGGATCTCGAAAAGTAACAATAGAAGTGCTGGGAGCTTATCTCATTCTTTAGTAGCAGAGCGCTCTTACAAACTTTGAAGATGATAAACCTTTCAGTTGCTTCTTTACCTTCGGCCCTTCCAATCCCTTCAAAATTTCTTAATTCGACTTCCAAATCCTTCTTCAATGGCCTTCAAATCCGTTTCCCATTTTCGTTTTGCGTTCCTCCTAAAACTGCAACTACTGGAGGAGGCCGCAATTCATCGGTGGTAATGATGGCCAAGAGGGAGGAGGAATTGAAGGATATAAGGGCCAAAACTACTGAGGAAATAAACGAAGAGGTCGTCGATCTTAAGGGTGAACTTCTTATGCTTCGTCTTCAAAAATCAGCCCGCAATGAGTTTAAGTCTAGCGAATTCCGCCGCATGCGCAAACGGGTACTTTTTTCCCCTTGTTGATGGATTGATTCTTAATTAATTTTGAGTTCAATAGCCGTTTGTGGGAATGATTCTAGAAACATGTATGTTTGTGGGAATCAACTTAGGATGCAGATTTGAGTTCACAGCCGAAAGAAATTTACCAAAACAATATTTCACCATGTTGGGAAATTTTTACAAAAGTTGCATTTTAGATTCATTTAGAATGTGCTCTGGAACGTAGAGGTCCAGTTAGAATCAGAAAATGTAAACTGAAACTGGGATTTCTAACGTTAACGTCATATTCTACTAAGATAAACTCTAAATAGCTCCCTCATAGATTTTACATTTTTGATAAAATCGGCACCATCTTCGAGAAACCCCTCGTATGTCTTCATGTTAACATTTTGTATAAGATTCCCAAAATGCCTGAAGCTTGAATGAGTCTATAGATGTGGAAAGCATTTGGGTTTAGAACGACTTGTCTTCTTATATGAAGTTGGTTAATGTAAATAACCTAATTCTATTCTGATCATGGAAGCTCACAATTTAGTGCATAAAAGAGAGAGTTTGCCATTTGACCATATGTAGCCTTCTCCTGACTTTTACACCAAAACTTCATCATGCTTGGTGCTTAGTCTGGATATTGAAATTATCCGATGGGCTTCTCTATGTTCCACTAAACCAAAGCCCTCAACGATTAGAAATTGTTGAATAGCAAATAATTTATTTACACATTATGAATTTAGTAAGGCTCGCAGATTTTTTTAATTCCCTTATGATCATGAATTGCTGGAGAGATGGTTAACACTGTAATAGTGGTAAGACTTGCCATTTCTCATAGTTTATGGTTTCAAGTCAAGTATGAGATTTAGGTAGCAAACTTTTTGCATCTGTAGTAATCGCATGGCTTCATGATAAGATCTTGAGTTGTTTGTAGTGACCCTCTAAAGTATTGTTTCAAAGCCTCTAACTGGGTAACTTAGTACTCCAAGGCCAGCTTTATGAAAGATTATTCAATGAGACCGCCACAATGTGTTGTCTCGTAATAACCGTTCAATGAGGATCTAATAATTGGTCGATCCCCTAATAACCACTTTATATAAATTTGAACTATTTCTCTCTGCATCTAAGGGTGAAAACTACCACCTACATCGTGATGGTCTAACTGAATAATTTCTCCGATATTGAACTAGGTGAAGCCTTCTTAGAGATTAGTGGTGAGTTCATGAACATAGGAATTGGCCTTGACAATCCTAGTCGTCAGTTAACCTGACTGATATATATGCAGTGGTATGATAATGTGGGACAATTAGGAAGTTTGTATTATATATTGCTTGTCTTCTCTCTTTATTGTATTTATTTATCTTCACATACCTTCAGATTGCAACATCGTAGCCAATACATCCAATGTTTGGTCTTGCCTAACAAGTTTCCTTTCGACACTATTTTTGAACCATTTATTGTTGTTTGTCCGGTGATAGATTTCTCGGATGCTAACAGTAAAACGTGAGAGAGAGATTGAAGAGGGTGTGGGCAAAAGGATGTCAAGAAAGTTAGATAGAAAGTGGAAGAAAAGTATTGTTGTCAGACCACCTCCATCTCTGAAGAAGTTGCGAGAGGAAGAAGCAGCAGCTGAAGAAGCTGAGAAATCTGCTTGAACGAATCAGATACATGCTCGCATTCAATCTTTATGAGTTTGAAGTTGTTGAGATTTGAGAACGCTGTTTAAGCAACACTTTAGAAAAAAAAAATTCCAACTTTAAACATTCTGATTCTTGTACTTAGCTTATGCACAAATGGAAATAGATTTCGAGTGGATCATGTTGAATTTATATGCTTTCACTCCTTAATTTAAATTAGATAAAAGGTATGTTTGGGAATG

mRNA sequence

GCGTAAATAGGGGTAAGAGGGGTAATAGGGGATCTCGAAAAGTAACAATAGAAGTGCTGGGAGCTTATCTCATTCTTTAGTAGCAGAGCGCTCTTACAAACTTTGAAGATGATAAACCTTTCAGTTGCTTCTTTACCTTCGGCCCTTCCAATCCCTTCAAAATTTCTTAATTCGACTTCCAAATCCTTCTTCAATGGCCTTCAAATCCGTTTCCCATTTTCGTTTTGCGTTCCTCCTAAAACTGCAACTACTGGAGGAGGCCGCAATTCATCGGTGGTAATGATGGCCAAGAGGGAGGAGGAATTGAAGGATATAAGGGCCAAAACTACTGAGGAAATAAACGAAGAGGTCGTCGATCTTAAGGGTGAACTTCTTATGCTTCGTCTTCAAAAATCAGCCCGCAATGAGTTTAAGTCTAGCGAATTCCGCCGCATGCGCAAACGGATTTCTCGGATGCTAACAGTAAAACGTGAGAGAGAGATTGAAGAGGGTGTGGGCAAAAGGATGTCAAGAAAGTTAGATAGAAAGTGGAAGAAAAGTATTGTTGTCAGACCACCTCCATCTCTGAAGAAGTTGCGAGAGGAAGAAGCAGCAGCTGAAGAAGCTGAGAAATCTGCTTGAACGAATCAGATACATGCTCGCATTCAATCTTTATGAGTTTGAAGTTGTTGAGATTTGAGAACGCTGTTTAAGCAACACTTTAGAAAAAAAAAATTCCAACTTTAAACATTCTGATTCTTGTACTTAGCTTATGCACAAATGGAAATAGATTTCGAGTGGATCATGTTGAATTTATATGCTTTCACTCCTTAATTTAAATTAGATAAAAGGTATGTTTGGGAATG

Coding sequence (CDS)

ATGATAAACCTTTCAGTTGCTTCTTTACCTTCGGCCCTTCCAATCCCTTCAAAATTTCTTAATTCGACTTCCAAATCCTTCTTCAATGGCCTTCAAATCCGTTTCCCATTTTCGTTTTGCGTTCCTCCTAAAACTGCAACTACTGGAGGAGGCCGCAATTCATCGGTGGTAATGATGGCCAAGAGGGAGGAGGAATTGAAGGATATAAGGGCCAAAACTACTGAGGAAATAAACGAAGAGGTCGTCGATCTTAAGGGTGAACTTCTTATGCTTCGTCTTCAAAAATCAGCCCGCAATGAGTTTAAGTCTAGCGAATTCCGCCGCATGCGCAAACGGATTTCTCGGATGCTAACAGTAAAACGTGAGAGAGAGATTGAAGAGGGTGTGGGCAAAAGGATGTCAAGAAAGTTAGATAGAAAGTGGAAGAAAAGTATTGTTGTCAGACCACCTCCATCTCTGAAGAAGTTGCGAGAGGAAGAAGCAGCAGCTGAAGAAGCTGAGAAATCTGCTTGA

Protein sequence

MINLSVASLPSALPIPSKFLNSTSKSFFNGLQIRFPFSFCVPPKTATTGGGRNSSVVMMAKREEELKDIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFKSSEFRRMRKRISRMLTVKREREIEEGVGKRMSRKLDRKWKKSIVVRPPPSLKKLREEEAAAEEAEKSA*
Homology
[Close]
BLAST of MELO3C018954 vs. Swiss-Prot
Match: RK29_ARATH (50S ribosomal protein L29, chloroplastic OS=Arabidopsis thaliana GN=RPL29 PE=1 SV=1)

HSP 1 Score: 196.4 bits (498), Expect = 2.5e-49
Identity = 105/168 (62.50%), Postives = 130/168 (77.38%), Query Frame = 1 

Query: 1   MINLSVASLPSALPIPSKFLNSTS-KSFFNGLQIRFPFSFCVPPKTATTGGGRNSSVVMM 60
           M++LS+A+  +A        ++TS  S F+G++I+   S  VP     +      SVVMM
Sbjct: 1   MLSLSIATPGTAAIFRRGTASATSTSSSFHGVRIQHQVSARVPAAATISSSSPKPSVVMM 60

Query: 61  AKREEELKDIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFKSSEFRRMRKRISRMLTV 120
           +KRE ELK+IR+KTTE++ EEVVDLKGEL MLRLQKSARNEFKSS+FRRM+K+++RMLTV
Sbjct: 61  SKREAELKEIRSKTTEQLQEEVVDLKGELFMLRLQKSARNEFKSSDFRRMKKQVARMLTV 120

Query: 121 KREREIEEGVGKRMSRKLDRKWKKSIVVRPPPSLKKLREEEAAAEEAE 168
           KREREI+EG+ KR+SRKLDR+WKKSIV RPPPSLKKL+EEEAA E AE
Sbjct: 121 KREREIKEGIKKRLSRKLDRQWKKSIVPRPPPSLKKLQEEEAAEEAAE 168

[Close]
BLAST of MELO3C018954 vs. Swiss-Prot
Match: RK29_MAIZE (50S ribosomal protein L29, chloroplastic OS=Zea mays GN=RPL29 PE=2 SV=1)

HSP 1 Score: 161.4 bits (407), Expect = 8.8e-39
Identity = 79/108 (73.15%), Postives = 96/108 (88.89%), Query Frame = 1 

Query: 52  RNSSVVMMAKREEELKDIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFKSSEFRRMRK 111
           R +++V MAKRE+EL++IRA TTE++ EEVVDLKGEL +LRL++SAR EFK+SEF RMRK
Sbjct: 54  RAAAMVAMAKREQELEEIRAMTTEQMEEEVVDLKGELFLLRLKRSARQEFKNSEFSRMRK 113

Query: 112 RISRMLTVKREREIEEGVGKRMSRKLDRKWKKSIVVRPPPSLKKLREE 160
           RI+RMLTVKREREIE+G+ KR+SRKLDRKWK+SIVVRPPPSL+  +EE
Sbjct: 114 RIARMLTVKREREIEQGINKRLSRKLDRKWKQSIVVRPPPSLRGNKEE 161

[Close]
BLAST of MELO3C018954 vs. Swiss-Prot
Match: RL29_CYAP4 (50S ribosomal protein L29 OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=rpmC PE=3 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 3.4e-06
Identity = 20/63 (31.75%), Postives = 43/63 (68.25%), Query Frame = 1 

Query: 65  ELKDIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFKSSEFRRMRKRISRMLTVKRERE 124
           ++KD+   +  E+  +++DLK +L  LRLQK+ R E K  +F+ +R ++++++T++R+R+
Sbjct: 5   KMKDLLDLSDAEVETQILDLKRQLFQLRLQKATRQEVKPHQFKHLRHQLAQLMTLERQRQ 64

Query: 125 IEE 128
           + +
Sbjct: 65  LTQ 67

[Close]
BLAST of MELO3C018954 vs. Swiss-Prot
Match: RL29_STAS1 (50S ribosomal protein L29 OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=rpmC PE=3 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 5.8e-06
Identity = 28/62 (45.16%), Postives = 37/62 (59.68%), Query Frame = 1 

Query: 67  KDIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFKSSEFRRMRKRISRMLTVKREREIE 126
           K+IR  TT EI E++   K EL  LR Q +     +++  R +RK I+R+ TV REREIE
Sbjct: 4   KEIRDLTTSEIEEQIKSSKEELFNLRFQLATGQLEETARIRTVRKTIARLKTVAREREIE 63

Query: 127 EG 129
           +G
Sbjct: 64  QG 65

[Close]
BLAST of MELO3C018954 vs. Swiss-Prot
Match: RL29_CLOTH (50S ribosomal protein L29 OS=Clostridium thermocellum (strain ATCC 27405 / DSM 1237 / NBRC 103400 / NCIMB 10682 / NRRL B-4536 / VPI 7372) GN=rpmC PE=3 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 9.9e-06
Identity = 26/60 (43.33%), Postives = 37/60 (61.67%), Query Frame = 1 

Query: 67  KDIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFKSSEFRRMRKRISRMLTVKREREIE 126
           KDIR K+ EE+ +E+V+LK EL  LR Q +        + R ++K I+R+ TV RERE++
Sbjct: 4   KDIRKKSQEELQKELVELKAELFKLRFQHATNQLENPMKLRDVKKSIARIKTVLRERELK 63

[Close]
BLAST of MELO3C018954 vs. TrEMBL
Match: A0A0A0KVL7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G095600 PE=3 SV=1)

HSP 1 Score: 307.0 bits (785), Expect = 1.4e-80
Identity = 158/170 (92.94%), Postives = 165/170 (97.06%), Query Frame = 1 

Query: 1   MINLSVASLPSALPIPSKFLNSTSKSFFNGLQIRFPFSFCVPPKTATTGGGRNSSVVMMA 60
           MINLS+ASLPS LPIPSKFLNSTSKS FN LQIRFPFSF +PPKTATTG GRNSSVVMMA
Sbjct: 1   MINLSIASLPSTLPIPSKFLNSTSKSSFNALQIRFPFSFRLPPKTATTGRGRNSSVVMMA 60

Query: 61  KREEELKDIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFKSSEFRRMRKRISRMLTVK 120
           KRE+ELKDIR+KTTEEINEEV+DLKGELLMLRLQKSARNEFKSSEFRRMRKRISRMLTV+
Sbjct: 61  KREDELKDIRSKTTEEINEEVIDLKGELLMLRLQKSARNEFKSSEFRRMRKRISRMLTVR 120

Query: 121 REREIEEGVGKRMSRKLDRKWKKSIVVRPPPSLKKLREEEAAAEEAEKSA 171
           REREIEEGVGKR+SRKLDRKWKKSIVVRPPPSLKKLREEEAAAEEAEKSA
Sbjct: 121 REREIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREEEAAAEEAEKSA 170

[Close]
BLAST of MELO3C018954 vs. TrEMBL
Match: V4SW89_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10026623mg PE=3 SV=1)

HSP 1 Score: 220.7 bits (561), Expect = 1.4e-54
Identity = 120/171 (70.18%), Postives = 143/171 (83.63%), Query Frame = 1 

Query: 2   INLSVASLPSALPIPSKFLNSTSKSFFNGLQIRFPFSFCVPPKTATTGGGR--NSSVVMM 61
           ++LS+AS  + +  P++  +   KS FNG+QIR  +    P + AT+  G   +S+VVMM
Sbjct: 3   MSLSIAST-TTITFPTEPFSKIPKSTFNGIQIRQSWPIRTPLRFATSSSGSRGSSTVVMM 62

Query: 62  AKREEELKDIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFKSSEFRRMRKRISRMLTV 121
           AKREEE+K+IRAKTTEEINEEVVDLKGEL MLRLQKS RNEFKSSEFRRMR+RI+RMLTV
Sbjct: 63  AKREEEMKEIRAKTTEEINEEVVDLKGELFMLRLQKSVRNEFKSSEFRRMRRRIARMLTV 122

Query: 122 KREREIEEGVGKRMSRKLDRKWKKSIVVRPPPSLKKLREEEAAAEEAEKSA 171
           KRERE+EEG+ KR+SRKLDR+WKKSIVVRPPPSLKKL+EEEAAA EAEKSA
Sbjct: 123 KRERELEEGINKRLSRKLDRQWKKSIVVRPPPSLKKLQEEEAAA-EAEKSA 171

[Close]
BLAST of MELO3C018954 vs. TrEMBL
Match: A0A067ERN3_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g030809mg PE=3 SV=1)

HSP 1 Score: 220.3 bits (560), Expect = 1.8e-54
Identity = 120/171 (70.18%), Postives = 143/171 (83.63%), Query Frame = 1 

Query: 2   INLSVASLPSALPIPSKFLNSTSKSFFNGLQIRFPFSFCVPPKTATTGGGR--NSSVVMM 61
           ++LS+AS  + +  P++  +   KS FNG+QIR  +    P + AT+  G   +S+VVMM
Sbjct: 3   MSLSIAST-TTITFPTEPFSKIPKSTFNGVQIRQSWPIRTPLRFATSSSGSRGSSAVVMM 62

Query: 62  AKREEELKDIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFKSSEFRRMRKRISRMLTV 121
           AKREEE+K+IRAKTTEEINEEVVDLKGEL MLRLQKS RNEFKSSEFRRMR+RI+RMLTV
Sbjct: 63  AKREEEMKEIRAKTTEEINEEVVDLKGELFMLRLQKSVRNEFKSSEFRRMRRRIARMLTV 122

Query: 122 KREREIEEGVGKRMSRKLDRKWKKSIVVRPPPSLKKLREEEAAAEEAEKSA 171
           KRERE+EEG+ KR+SRKLDR+WKKSIVVRPPPSLKKL+EEEAAA EAEKSA
Sbjct: 123 KRERELEEGINKRLSRKLDRQWKKSIVVRPPPSLKKLQEEEAAA-EAEKSA 171

[Close]
BLAST of MELO3C018954 vs. TrEMBL
Match: F6HWM0_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_07s0141g00200 PE=3 SV=1)

HSP 1 Score: 220.3 bits (560), Expect = 1.8e-54
Identity = 121/169 (71.60%), Postives = 140/169 (82.84%), Query Frame = 1 

Query: 1   MINLSVASLPSALPIPSKFLNSTSKSFFNGLQIRFPFSFCVPPKTATTGGGRNSSVVMMA 60
           M +LS+AS PS+L IP K  ++  KS FNG++I  P+      K +      +SSVVMMA
Sbjct: 1   MFSLSIAS-PSSLKIPPKTTSTFPKSSFNGIRIPTPY------KPSFRSPSSSSSVVMMA 60

Query: 61  KREEELKDIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFKSSEFRRMRKRISRMLTVK 120
           KREEELK+IRAKTTEE+NEE+VDLKGELLMLRLQKS RNEFK SEF RMRKR++RMLTVK
Sbjct: 61  KREEELKEIRAKTTEELNEEIVDLKGELLMLRLQKSVRNEFKPSEFGRMRKRVARMLTVK 120

Query: 121 REREIEEGVGKRMSRKLDRKWKKSIVVRPPPSLKKLREEEAAAEEAEKS 170
           REREIEEG+ KR+SRKLDR+WKKSIVVRPPPSLKKL+EEEAAA EAEKS
Sbjct: 121 REREIEEGINKRLSRKLDRQWKKSIVVRPPPSLKKLQEEEAAA-EAEKS 161

[Close]
BLAST of MELO3C018954 vs. TrEMBL
Match: F6I6Q6_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_12s0121g00010 PE=3 SV=1)

HSP 1 Score: 219.2 bits (557), Expect = 4.0e-54
Identity = 121/169 (71.60%), Postives = 139/169 (82.25%), Query Frame = 1 

Query: 1   MINLSVASLPSALPIPSKFLNSTSKSFFNGLQIRFPFSFCVPPKTATTGGGRNSSVVMMA 60
           M +LS+AS PS+L IP K  ++  KS FNG++I        P K +      +SSVVMMA
Sbjct: 1   MFSLSIAS-PSSLKIPPKTTSTFPKSSFNGIRIP------TPNKPSFRSPSSSSSVVMMA 60

Query: 61  KREEELKDIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFKSSEFRRMRKRISRMLTVK 120
           KREEELK+IRAKTTEE+NEE+VDLKGELLMLRLQKS RNEFK SEF RMRKR++RMLTVK
Sbjct: 61  KREEELKEIRAKTTEELNEEIVDLKGELLMLRLQKSVRNEFKPSEFGRMRKRVARMLTVK 120

Query: 121 REREIEEGVGKRMSRKLDRKWKKSIVVRPPPSLKKLREEEAAAEEAEKS 170
           REREIEEG+ KR+SRKLDR+WKKSIVVRPPPSLKKL+EEEAAA EAEKS
Sbjct: 121 REREIEEGINKRLSRKLDRQWKKSIVVRPPPSLKKLQEEEAAA-EAEKS 161

[Close]
BLAST of MELO3C018954 vs. TAIR10
Match: AT5G65220.1 (AT5G65220.1 Ribosomal L29 family protein )

HSP 1 Score: 196.4 bits (498), Expect = 1.4e-50
Identity = 105/168 (62.50%), Postives = 130/168 (77.38%), Query Frame = 1 

Query: 1   MINLSVASLPSALPIPSKFLNSTS-KSFFNGLQIRFPFSFCVPPKTATTGGGRNSSVVMM 60
           M++LS+A+  +A        ++TS  S F+G++I+   S  VP     +      SVVMM
Sbjct: 1   MLSLSIATPGTAAIFRRGTASATSTSSSFHGVRIQHQVSARVPAAATISSSSPKPSVVMM 60

Query: 61  AKREEELKDIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFKSSEFRRMRKRISRMLTV 120
           +KRE ELK+IR+KTTE++ EEVVDLKGEL MLRLQKSARNEFKSS+FRRM+K+++RMLTV
Sbjct: 61  SKREAELKEIRSKTTEQLQEEVVDLKGELFMLRLQKSARNEFKSSDFRRMKKQVARMLTV 120

Query: 121 KREREIEEGVGKRMSRKLDRKWKKSIVVRPPPSLKKLREEEAAAEEAE 168
           KREREI+EG+ KR+SRKLDR+WKKSIV RPPPSLKKL+EEEAA E AE
Sbjct: 121 KREREIKEGIKKRLSRKLDRQWKKSIVPRPPPSLKKLQEEEAAEEAAE 168

[Close]
BLAST of MELO3C018954 vs. NCBI nr
Match: gi|659111132|ref|XP_008455595.1| (PREDICTED: 50S ribosomal protein L29, chloroplastic [Cucumis melo])

HSP 1 Score: 328.2 bits (840), Expect = 8.7e-87
Identity = 170/170 (100.00%), Postives = 170/170 (100.00%), Query Frame = 1 

Query: 1   MINLSVASLPSALPIPSKFLNSTSKSFFNGLQIRFPFSFCVPPKTATTGGGRNSSVVMMA 60
           MINLSVASLPSALPIPSKFLNSTSKSFFNGLQIRFPFSFCVPPKTATTGGGRNSSVVMMA
Sbjct: 1   MINLSVASLPSALPIPSKFLNSTSKSFFNGLQIRFPFSFCVPPKTATTGGGRNSSVVMMA 60

Query: 61  KREEELKDIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFKSSEFRRMRKRISRMLTVK 120
           KREEELKDIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFKSSEFRRMRKRISRMLTVK
Sbjct: 61  KREEELKDIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFKSSEFRRMRKRISRMLTVK 120

Query: 121 REREIEEGVGKRMSRKLDRKWKKSIVVRPPPSLKKLREEEAAAEEAEKSA 171
           REREIEEGVGKRMSRKLDRKWKKSIVVRPPPSLKKLREEEAAAEEAEKSA
Sbjct: 121 REREIEEGVGKRMSRKLDRKWKKSIVVRPPPSLKKLREEEAAAEEAEKSA 170

[Close]
BLAST of MELO3C018954 vs. NCBI nr
Match: gi|449438829|ref|XP_004137190.1| (PREDICTED: 50S ribosomal protein L29, chloroplastic [Cucumis sativus])

HSP 1 Score: 307.0 bits (785), Expect = 2.1e-80
Identity = 158/170 (92.94%), Postives = 165/170 (97.06%), Query Frame = 1 

Query: 1   MINLSVASLPSALPIPSKFLNSTSKSFFNGLQIRFPFSFCVPPKTATTGGGRNSSVVMMA 60
           MINLS+ASLPS LPIPSKFLNSTSKS FN LQIRFPFSF +PPKTATTG GRNSSVVMMA
Sbjct: 1   MINLSIASLPSTLPIPSKFLNSTSKSSFNALQIRFPFSFRLPPKTATTGRGRNSSVVMMA 60

Query: 61  KREEELKDIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFKSSEFRRMRKRISRMLTVK 120
           KRE+ELKDIR+KTTEEINEEV+DLKGELLMLRLQKSARNEFKSSEFRRMRKRISRMLTV+
Sbjct: 61  KREDELKDIRSKTTEEINEEVIDLKGELLMLRLQKSARNEFKSSEFRRMRKRISRMLTVR 120

Query: 121 REREIEEGVGKRMSRKLDRKWKKSIVVRPPPSLKKLREEEAAAEEAEKSA 171
           REREIEEGVGKR+SRKLDRKWKKSIVVRPPPSLKKLREEEAAAEEAEKSA
Sbjct: 121 REREIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREEEAAAEEAEKSA 170

[Close]
BLAST of MELO3C018954 vs. NCBI nr
Match: gi|729450197|ref|XP_010523326.1| (PREDICTED: 50S ribosomal protein L29, chloroplastic [Tarenaya hassleriana])

HSP 1 Score: 221.5 bits (563), Expect = 1.1e-54
Identity = 122/171 (71.35%), Postives = 141/171 (82.46%), Query Frame = 1 

Query: 1   MINLSVASLPSALPIPSKFLNSTS-KSFFNGLQIRFPFSFCVPPKTATTGGGRNSSVVMM 60
           M++ S+A    A   P   ++ TS  S F+G++IR      VP  T ++    +++VVMM
Sbjct: 1   MLSFSIAPPSMAAVFPRGSVSGTSTSSSFHGVRIRHAVPVRVPAATISSRKS-SATVVMM 60

Query: 61  AKREEELKDIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFKSSEFRRMRKRISRMLTV 120
           AKREEELK IRAKTT+EINEEVVDLKGEL MLRLQKSARNEFKSSEFRRMRKR++RMLTV
Sbjct: 61  AKREEELKAIRAKTTDEINEEVVDLKGELFMLRLQKSARNEFKSSEFRRMRKRVARMLTV 120

Query: 121 KREREIEEGVGKRMSRKLDRKWKKSIVVRPPPSLKKLREEEAAAEEAEKSA 171
           KREREIEEGVGKR+SRKLDR+WKKSIVVRPPPSLKKL+EEEAAAEEAEKSA
Sbjct: 121 KREREIEEGVGKRLSRKLDRQWKKSIVVRPPPSLKKLQEEEAAAEEAEKSA 170

[Close]
BLAST of MELO3C018954 vs. NCBI nr
Match: gi|567871169|ref|XP_006428206.1| (hypothetical protein CICLE_v10026623mg [Citrus clementina])

HSP 1 Score: 220.7 bits (561), Expect = 2.0e-54
Identity = 120/171 (70.18%), Postives = 143/171 (83.63%), Query Frame = 1 

Query: 2   INLSVASLPSALPIPSKFLNSTSKSFFNGLQIRFPFSFCVPPKTATTGGGR--NSSVVMM 61
           ++LS+AS  + +  P++  +   KS FNG+QIR  +    P + AT+  G   +S+VVMM
Sbjct: 3   MSLSIAST-TTITFPTEPFSKIPKSTFNGIQIRQSWPIRTPLRFATSSSGSRGSSTVVMM 62

Query: 62  AKREEELKDIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFKSSEFRRMRKRISRMLTV 121
           AKREEE+K+IRAKTTEEINEEVVDLKGEL MLRLQKS RNEFKSSEFRRMR+RI+RMLTV
Sbjct: 63  AKREEEMKEIRAKTTEEINEEVVDLKGELFMLRLQKSVRNEFKSSEFRRMRRRIARMLTV 122

Query: 122 KREREIEEGVGKRMSRKLDRKWKKSIVVRPPPSLKKLREEEAAAEEAEKSA 171
           KRERE+EEG+ KR+SRKLDR+WKKSIVVRPPPSLKKL+EEEAAA EAEKSA
Sbjct: 123 KRERELEEGINKRLSRKLDRQWKKSIVVRPPPSLKKLQEEEAAA-EAEKSA 171

[Close]
BLAST of MELO3C018954 vs. NCBI nr
Match: gi|694437160|ref|XP_009345632.1| (PREDICTED: 50S ribosomal protein L29, chloroplastic-like [Pyrus x bretschneideri])

HSP 1 Score: 220.7 bits (561), Expect = 2.0e-54
Identity = 116/164 (70.73%), Postives = 136/164 (82.93%), Query Frame = 1 

Query: 10  PSALPIPSKFLNSTSKSFFNGLQIRF---PFSFCVPPKTATTGGGRNSSVVMMAKREEEL 69
           PS +  PSK L+  SKS FNG++++         +P +++      +SSVVMMAKREEE+
Sbjct: 10  PSTVTFPSKLLSPVSKSSFNGMRVQRLCPNIGVRLPTESSRRPCSPSSSVVMMAKREEEM 69

Query: 70  KDIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFKSSEFRRMRKRISRMLTVKREREIE 129
           K+IR KTTEEINEEVVDLKGEL MLRLQKSARNEF SSEFRRMRKRI+R+LTVKREREIE
Sbjct: 70  KEIRTKTTEEINEEVVDLKGELFMLRLQKSARNEFTSSEFRRMRKRIARLLTVKREREIE 129

Query: 130 EGVGKRMSRKLDRKWKKSIVVRPPPSLKKLREEEAAAEEAEKSA 171
           EG+GKR+SRK DR+WKKSIVVRPPPSLKKL+EEEAAAE AEK+A
Sbjct: 130 EGIGKRLSRKFDRQWKKSIVVRPPPSLKKLQEEEAAAEAAEKAA 173

The following BLAST results are available for this feature:
BLAST of MELO3C018954 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RK29_ARATH2.5e-4962.5050S ribosomal protein L29, chloroplastic OS=Arabidopsis thaliana GN=RPL29 PE=1 S... [more]
RK29_MAIZE8.8e-3973.1550S ribosomal protein L29, chloroplastic OS=Zea mays GN=RPL29 PE=2 SV=1[more]
RL29_CYAP43.4e-0631.7550S ribosomal protein L29 OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=rp... [more]
RL29_STAS15.8e-0645.1650S ribosomal protein L29 OS=Staphylococcus saprophyticus subsp. saprophyticus (... [more]
RL29_CLOTH9.9e-0643.3350S ribosomal protein L29 OS=Clostridium thermocellum (strain ATCC 27405 / DSM 1... [more]
BLAST of MELO3C018954 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KVL7_CUCSA1.4e-8092.94Uncharacterized protein OS=Cucumis sativus GN=Csa_4G095600 PE=3 SV=1[more]
V4SW89_9ROSI1.4e-5470.18Uncharacterized protein OS=Citrus clementina GN=CICLE_v10026623mg PE=3 SV=1[more]
A0A067ERN3_CITSI1.8e-5470.18Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g030809mg PE=3 SV=1[more]
F6HWM0_VITVI1.8e-5471.60Putative uncharacterized protein OS=Vitis vinifera GN=VIT_07s0141g00200 PE=3 SV=... [more]
F6I6Q6_VITVI4.0e-5471.60Putative uncharacterized protein OS=Vitis vinifera GN=VIT_12s0121g00010 PE=3 SV=... [more]
BLAST of MELO3C018954 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G65220.11.4e-5062.50 Ribosomal L29 family protein [more]
BLAST of MELO3C018954 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659111132|ref|XP_008455595.1|8.7e-87100.00PREDICTED: 50S ribosomal protein L29, chloroplastic [Cucumis melo][more]
gi|449438829|ref|XP_004137190.1|2.1e-8092.94PREDICTED: 50S ribosomal protein L29, chloroplastic [Cucumis sativus][more]
gi|729450197|ref|XP_010523326.1|1.1e-5471.35PREDICTED: 50S ribosomal protein L29, chloroplastic [Tarenaya hassleriana][more]
gi|567871169|ref|XP_006428206.1|2.0e-5470.18hypothetical protein CICLE_v10026623mg [Citrus clementina][more]
gi|694437160|ref|XP_009345632.1|2.0e-5470.73PREDICTED: 50S ribosomal protein L29, chloroplastic-like [Pyrus x bretschneideri... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001854Ribosomal_L29/L35
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
GO:0005840ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006412 translation
biological_process GO:0006354 DNA-templated transcription, elongation
biological_process GO:0045893 positive regulation of transcription, DNA-templated
biological_process GO:0042793 transcription from plastid promoter
cellular_component GO:0009941 chloroplast envelope
cellular_component GO:0009570 chloroplast stroma
cellular_component GO:0009295 nucleoid
cellular_component GO:0005840 ribosome
cellular_component GO:0005622 intracellular
molecular_function GO:0003735 structural constituent of ribosome
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
MU54430melon EST collection version 4.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C018954T1MELO3C018954T1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
MU54430MU54430transcribed_cluster


InterPro
Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001854Ribosomal protein L29GENE3DG3DSA:1.10.287.310coord: 66..127
score: 3.0
IPR001854Ribosomal protein L29HAMAPMF_00374Ribosomal_L29coord: 64..123
score: 12
IPR001854Ribosomal protein L29PFAMPF00831Ribosomal_L29coord: 67..123
score: 2.5
IPR001854Ribosomal protein L29TIGRFAMsTIGR00012TIGR00012coord: 68..123
score: 1.8
IPR001854Ribosomal protein L29unknownSSF46561Ribosomal protein L29 (L29p)coord: 66..126
score: 3.79
NoneNo IPR availableunknownCoilCoilcoord: 153..170
scor
NoneNo IPR availablePANTHERPTHR1091660S RIBOSOMAL PROTEIN L35/50S RIBOSOMAL PROTEIN L29coord: 4..166
score: 1.8

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
MELO3C018954CmoCh04G008850Cucurbita moschata (Rifu)cmomeB690
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C018954Cucumber (Chinese Long) v3cucmeB304
MELO3C018954Watermelon (97103) v2mewmbB466
MELO3C018954Wax gourdmewgoB566
MELO3C018954Cucumber (Gy14) v1cgymeB457
MELO3C018954Cucurbita maxima (Rimu)cmameB302
MELO3C018954Cucurbita maxima (Rimu)cmameB698
MELO3C018954Cucurbita moschata (Rifu)cmomeB297
MELO3C018954Wild cucumber (PI 183967)cpimeB298
MELO3C018954Cucumber (Chinese Long) v2cumeB303
MELO3C018954Watermelon (Charleston Gray)mewcgB456
MELO3C018954Watermelon (97103) v1mewmB494
MELO3C018954Cucurbita pepo (Zucchini)cpemeB199
MELO3C018954Cucurbita pepo (Zucchini)cpemeB421
MELO3C018954Bottle gourd (USVL1VR-Ls)lsimeB273
MELO3C018954Cucumber (Gy14) v2cgybmeB259
MELO3C018954Silver-seed gourdcarmeB0925
MELO3C018954Silver-seed gourdcarmeB0993