CmoCh04G008590 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh04G008590
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Senescence-associated family protein
Location	Cmo_Chr04 : 4288131 .. 4288751 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTACTAGGGAACCCACGGCCGCAGATTAAGAGAACGGCGAGTGTATCGAGAATCACGGTGGATGTCAGGCAGGAAAAGGGTCAACAGCCGTACGATGATCAAAATCCGGACACCAAAGAAATTTCTCGTCTTGAGCAGGATGTAGTGAATTACACCTTTGCCTTCGCGTCACCGAGAGGCCGGAGAAGTCTCTCCCACAATTCTTCTCTTCATTTTCTACGTACTTGCTCCTTCTGTCAACGCCGTCTCTCACCCGCCCGTGACATTTACATGTACATGTATGTATGAGTCAATTATATCCATTTTTCTTATGTAAACCTCCATAAACTTGATTTTTAGTTGTTGATATGCAGGGGAGATACTGCTTTTTGCAGCATGGAGTGCAGAGAGCAGAGTATGGAACAAGAGAAGTGCACTACTGCCGGCGGCGGTGGCGGCCGAGCTAAAGAGAGATGAGACTGTGGCGGCGCTTTAAAAGTATTGTATTTGTTGGAATGTAAAAAAGAAAATGTGGAAGTTTGTGCCATCACAAAAACAAGGAACTTACTATGAATGATTATGAATCTTGCGGCTCAAACTTGTGAATTTCATATACATAAACTTAAAAGCTGACTAACG

mRNA sequence

ATGTTACTAGGGAACCCACGGCCGCAGATTAAGAGAACGGCGAGTGTATCGAGAATCACGGTGGATGTCAGGCAGGAAAAGGGTCAACAGCCGTACGATGATCAAAATCCGGACACCAAAGAAATTTCTCGTCTTGAGCAGGATGTAGTGAATTACACCTTTGCCTTCGCGTCACCGAGAGGCCGGAGAAGTCTCTCCCACAATTCTTCTCTTCATTTTCTACGTACTTGCTCCTTCTGTCAACGCCGTCTCTCACCCGCCCGTGACATTTACATGTACATGGGAGATACTGCTTTTTGCAGCATGGAGTGCAGAGAGCAGAGTATGGAACAAGAGAAGTGCACTACTGCCGGCGGCGGTGGCGGCCGAGCTAAAGAGAGATGAGACTGTGGCGGCGCTTTAAAAGTATTGTATTTGTTGGAATGTAAAAAAGAAAATGTGGAAGTTTGTGCCATCACAAAAACAAGGAACTTACTATGAATGATTATGAATCTTGCGGCTCAAACTTGTGAATTTCATATACATAAACTTAAAAGCTGACTAACG

Coding sequence (CDS)

ATGTTACTAGGGAACCCACGGCCGCAGATTAAGAGAACGGCGAGTGTATCGAGAATCACGGTGGATGTCAGGCAGGAAAAGGGTCAACAGCCGTACGATGATCAAAATCCGGACACCAAAGAAATTTCTCGTCTTGAGCAGGATGTAGTGAATTACACCTTTGCCTTCGCGTCACCGAGAGGCCGGAGAAGTCTCTCCCACAATTCTTCTCTTCATTTTCTACGTACTTGCTCCTTCTGTCAACGCCGTCTCTCACCCGCCCGTGACATTTACATGTACATGGGAGATACTGCTTTTTGCAGCATGGAGTGCAGAGAGCAGAGTATGGAACAAGAGAAGTGCACTACTGCCGGCGGCGGTGGCGGCCGAGCTAAAGAGAGATGA

Homology

[Close]

BLAST of CmoCh04G008590 vs. TrEMBL
Match: A0A0A0KUK1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G030990 PE=4 SV=1)

HSP 1 Score: 147.9 bits (372), Expect = 8.4e-33
Identity = 79/130 (60.77%), Postives = 94/130 (72.31%), Query Frame = 1


Query: 1   MLLGN-PRPQIKRTASVSRITVDVRQEKGQQPYDDQNPDTKEISR-------LEQDVVNY 60
           MLLG  PR Q+KRTASVS ITVD+   +GQQP +DQNP T +I +       L+ DV+NY
Sbjct: 2   MLLGKRPRGQMKRTASVSGITVDLSHVEGQQPSEDQNPTTGDIPKVICSTQTLDSDVMNY 61

Query: 61  TFAFASPRGRRSLS----------HNSSLHFLRTCSFCQRRLSPARDIYMYMGDTAFCSM 113
           T +F SPRGR++LS          H SS HFLR+C+FC+RRLSP RDIYMYMGDTAFCS 
Sbjct: 62  TLSFVSPRGRKNLSPAASFNKDSDHRSSDHFLRSCTFCRRRLSPGRDIYMYMGDTAFCSA 121

[Close]

BLAST of CmoCh04G008590 vs. TrEMBL
Match: W9SH55_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_021540 PE=4 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 4.9e-17
Identity = 60/136 (44.12%), Postives = 80/136 (58.82%), Query Frame = 1


Query: 1   MLLGN-PRPQIKRTASVSRITVDVR---QEKGQQPYDDQNPDTKEISRLEQDVV---NYT 60
           MLLG  PRP +KRT S++ IT D+    +    QP D  NP   ++ + +Q ++   N+ 
Sbjct: 1   MLLGKRPRPPMKRTTSMTEITFDLSTNDEMMSSQPSDPHNPFKVDVRQQDQRLLAAHNHN 60

Query: 61  ------FAFASPRGRRSLSHN--SSLHFLRTCSFCQRRLSPARDIYMYMGDTAFCSMECR 118
                    ASPR  R  S +   + HFLR+CS C+RRL P RDIYMY GD+AFCS+ECR
Sbjct: 61  NNNSNHMMMASPRNHRRNSADFVETSHFLRSCSLCRRRLVPNRDIYMYRGDSAFCSLECR 120

[Close]

BLAST of CmoCh04G008590 vs. TrEMBL
Match: Q52KA1_ARATH (At4g39795 OS=Arabidopsis thaliana GN=At4g39795 PE=2 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 9.3e-16
Identity = 58/126 (46.03%), Postives = 72/126 (57.14%), Query Frame = 1


Query: 1   MLLGN-PRPQIKRTASVSRITVDVRQEKGQQPYDDQNPDTKEISRLEQDVV----NYTFA 60
           MLLGN PRPQ++RTAS++RIT++V          D +    + S +   VV    NY   
Sbjct: 9   MLLGNRPRPQMQRTASITRITIEV----------DGDQTAGQDSDVSMTVVDGGENYAQR 68

Query: 61  FASP----RGRRSLSHNSS-LHFLRTCSFCQRRLSPARDIYMYMGDTAFCSMECREQSME 117
           F SP    R  R     SS   FL  C FC+R L+P RDIYMY GD AFCS+ECREQ ME
Sbjct: 69  FLSPVNHQRNERKYGGRSSPSSFLVNCGFCKRGLAPGRDIYMYKGDAAFCSIECREQQME 124

[Close]

BLAST of CmoCh04G008590 vs. TrEMBL
Match: F4JW68_ARATH (Uncharacterized protein OS=Arabidopsis thaliana GN=At4g39795 PE=4 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 9.3e-16
Identity = 58/126 (46.03%), Postives = 72/126 (57.14%), Query Frame = 1


Query: 1   MLLGN-PRPQIKRTASVSRITVDVRQEKGQQPYDDQNPDTKEISRLEQDVV----NYTFA 60
           MLLGN PRPQ++RTAS++RIT++V          D +    + S +   VV    NY   
Sbjct: 1   MLLGNRPRPQMQRTASITRITIEV----------DGDQTAGQDSDVSMTVVDGGENYAQR 60

Query: 61  FASP----RGRRSLSHNSS-LHFLRTCSFCQRRLSPARDIYMYMGDTAFCSMECREQSME 117
           F SP    R  R     SS   FL  C FC+R L+P RDIYMY GD AFCS+ECREQ ME
Sbjct: 61  FLSPVNHQRNERKYGGRSSPSSFLVNCGFCKRGLAPGRDIYMYKGDAAFCSIECREQQME 116

[Close]

BLAST of CmoCh04G008590 vs. TrEMBL
Match: D7UEC0_VITVI (Putative uncharacterized protein (Fragment) OS=Vitis vinifera GN=VIT_00s1003g00010 PE=4 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 1.6e-15
Identity = 59/131 (45.04%), Postives = 70/131 (53.44%), Query Frame = 1


Query: 1   MLLGN-PRPQIKRTASVSRITVDVRQEK--GQQPYDDQNPDTKEISRLEQDVVNYTFAFA 60
           M+LG   RPQIKRT S++ ITVD+      G   YD +                +  A  
Sbjct: 9   MMLGKRARPQIKRTTSMTGITVDLGHNMVAGSNGYDPR----------------FLAATV 68

Query: 61  SPRGRRSLSHN--SSLHFLRTCSFCQRRLSPARDIYMYMGDTAFCSMECREQSMEQEKCT 120
           SPR  R  S     + HFLRTC  CQRRL P RDIYMY GDTAFCS+ECREQ M+Q++  
Sbjct: 69  SPRIHRRSSGEFMETAHFLRTCGLCQRRLQPGRDIYMYRGDTAFCSLECREQQMKQDERK 123

Query: 121 TAGGGGGRAKE 127
               G    KE
Sbjct: 129 EKYSGMASKKE 123

[Close]

BLAST of CmoCh04G008590 vs. TAIR10
Match: AT4G39795.1 (AT4G39795.1 Protein of unknown function (DUF581))

HSP 1 Score: 91.3 bits (225), Expect = 4.7e-19
Identity = 58/126 (46.03%), Postives = 72/126 (57.14%), Query Frame = 1


Query: 1   MLLGN-PRPQIKRTASVSRITVDVRQEKGQQPYDDQNPDTKEISRLEQDVV----NYTFA 60
           MLLGN PRPQ++RTAS++RIT++V          D +    + S +   VV    NY   
Sbjct: 1   MLLGNRPRPQMQRTASITRITIEV----------DGDQTAGQDSDVSMTVVDGGENYAQR 60

Query: 61  FASP----RGRRSLSHNSS-LHFLRTCSFCQRRLSPARDIYMYMGDTAFCSMECREQSME 117
           F SP    R  R     SS   FL  C FC+R L+P RDIYMY GD AFCS+ECREQ ME
Sbjct: 61  FLSPVNHQRNERKYGGRSSPSSFLVNCGFCKRGLAPGRDIYMYKGDAAFCSIECREQQME 116

[Close]

BLAST of CmoCh04G008590 vs. TAIR10
Match: AT1G22160.1 (AT1G22160.1 Protein of unknown function (DUF581))

HSP 1 Score: 84.0 bits (206), Expect = 7.5e-17
Identity = 53/114 (46.49%), Postives = 69/114 (60.53%), Query Frame = 1


Query: 1   MLLGN-PRPQIKRTASVSRITVDVRQEKGQQPYDDQNP--DTKEISRLEQDVVNYTF-AF 60
           MLLG   RP IKRT S+S I  D+ Q   Q+P D Q    +  E  ++ Q +++    A 
Sbjct: 1   MLLGKRQRPPIKRTTSLSEIKFDLNQPSEQEPSDHQIQLVNVDEHRQVHQRLLDQRLLAM 60

Query: 61  ASPRG-RRSLSHNSSLHFLRTCSFCQRRLSPARDIYMYMGDTAFCSMECREQSM 110
            SPRG +R  S + S  FLR+CS C+R L   RDIYMY GD AFCS+ECR+Q +
Sbjct: 61  VSPRGTQRRHSSDYSEDFLRSCSLCKRLLVHGRDIYMYRGDRAFCSLECRQQQI 114

[Close]

BLAST of CmoCh04G008590 vs. TAIR10
Match: AT1G78020.1 (AT1G78020.1 Protein of unknown function (DUF581))

HSP 1 Score: 80.5 bits (197), Expect = 8.3e-16
Identity = 52/142 (36.62%), Postives = 70/142 (49.30%), Query Frame = 1


Query: 1   MLLGN-PRPQIKRTASVSRITVDVRQEKGQQPYDDQNPD------------TKEISRLEQ 60
           MLLG   RP I RT S+S I  D+      +P + Q P             T  + +   
Sbjct: 1   MLLGKRQRPPINRTTSLSEIKFDLNLPSESEPSNQQKPTVASPYGSNGQAVTAAVDQNRG 60

Query: 61  DVVNYTFAFASPRG---RRSLSHNSSLHFLRTCSFCQRRLSPARDIYMYMGDTAFCSMEC 120
            +     +  +PRG   R S   + + HFLR+C+ C+R L P RDIYMY GD AFCS EC
Sbjct: 61  FLDQRLLSMVTPRGNLRRHSGDFSDAGHFLRSCALCERLLVPGRDIYMYRGDKAFCSSEC 120

Query: 121 REQSMEQEKCTTAGGGGGRAKE 127
           R++ M Q++    G     AKE
Sbjct: 121 RQEQMAQDERKEKGKSAAPAKE 142

[Close]

BLAST of CmoCh04G008590 vs. TAIR10
Match: AT1G53885.1 (AT1G53885.1 Protein of unknown function (DUF581))

HSP 1 Score: 58.5 bits (140), Expect = 3.4e-09
Identity = 28/68 (41.18%), Postives = 40/68 (58.82%), Query Frame = 1


Query: 42  ISRLEQDVVNYTFAFASPRGRRSLSHNSSLHFLRTCSFCQRRLSPARDIYMYMGDTAFCS 101
           ++R  ++ +N     +S R  RS  + S L FL+TC  C ++L   +D+YMY GD  FCS
Sbjct: 11  VTRDSREKLNNIVIKSSLRLNRSNPNISELCFLKTCHLCNKQLHQDKDVYMYRGDLGFCS 70

Query: 102 MECREQSM 110
            ECRE  M
Sbjct: 71  RECRESQM 78

[Close]

BLAST of CmoCh04G008590 vs. TAIR10
Match: AT1G53903.1 (AT1G53903.1 Protein of unknown function (DUF581))

HSP 1 Score: 58.5 bits (140), Expect = 3.4e-09
Identity = 28/68 (41.18%), Postives = 40/68 (58.82%), Query Frame = 1


Query: 42  ISRLEQDVVNYTFAFASPRGRRSLSHNSSLHFLRTCSFCQRRLSPARDIYMYMGDTAFCS 101
           ++R  ++ +N     +S R  RS  + S L FL+TC  C ++L   +D+YMY GD  FCS
Sbjct: 11  VTRDSREKLNNIVIKSSLRLNRSNPNISELCFLKTCHLCNKQLHQDKDVYMYRGDLGFCS 70

Query: 102 MECREQSM 110
            ECRE  M
Sbjct: 71  RECRESQM 78

[Close]

BLAST of CmoCh04G008590 vs. NCBI nr
Match: gi|449462872|ref|XP_004149159.1| (PREDICTED: uncharacterized protein LOC101212822 [Cucumis sativus])

HSP 1 Score: 147.9 bits (372), Expect = 1.2e-32
Identity = 79/130 (60.77%), Postives = 94/130 (72.31%), Query Frame = 1


Query: 1   MLLGN-PRPQIKRTASVSRITVDVRQEKGQQPYDDQNPDTKEISR-------LEQDVVNY 60
           MLLG  PR Q+KRTASVS ITVD+   +GQQP +DQNP T +I +       L+ DV+NY
Sbjct: 2   MLLGKRPRGQMKRTASVSGITVDLSHVEGQQPSEDQNPTTGDIPKVICSTQTLDSDVMNY 61

Query: 61  TFAFASPRGRRSLS----------HNSSLHFLRTCSFCQRRLSPARDIYMYMGDTAFCSM 113
           T +F SPRGR++LS          H SS HFLR+C+FC+RRLSP RDIYMYMGDTAFCS 
Sbjct: 62  TLSFVSPRGRKNLSPAASFNKDSDHRSSDHFLRSCTFCRRRLSPGRDIYMYMGDTAFCSA 121

[Close]

BLAST of CmoCh04G008590 vs. NCBI nr
Match: gi|659107644|ref|XP_008453781.1| (PREDICTED: uncharacterized protein LOC103494409 [Cucumis melo])

HSP 1 Score: 135.6 bits (340), Expect = 6.2e-29
Identity = 76/130 (58.46%), Postives = 92/130 (70.77%), Query Frame = 1


Query: 1   MLLGN-PRPQIKRTASVSRITVDVRQEKGQQPYDD-QNPDTKEI-------SRLEQDVVN 60
           MLLG  PR Q+KRTASVS ITVD+   +GQ+P +D Q P T EI         L+ DV+N
Sbjct: 2   MLLGKRPRGQMKRTASVSGITVDLSHVEGQEPSEDHQVPTTGEIPPVICSSQSLDCDVMN 61

Query: 61  YTFAFASPRGRRSLS---------HNSSLHFLRTCSFCQRRLSPARDIYMYMGDTAFCSM 113
           YT +F SPRGR++LS         H SS HFLR+C+FC+RRLSP RDIYMYMGDTAFCS 
Sbjct: 62  YTLSFVSPRGRKNLSPAAFNKDIDHRSSDHFLRSCTFCRRRLSPGRDIYMYMGDTAFCSA 121

[Close]

BLAST of CmoCh04G008590 vs. NCBI nr
Match: gi|359497432|ref|XP_003635513.1| (PREDICTED: uncharacterized protein LOC100261790 [Vitis vinifera])

HSP 1 Score: 103.2 bits (256), Expect = 3.4e-19
Identity = 65/138 (47.10%), Postives = 78/138 (56.52%), Query Frame = 1


Query: 1   MLLGN-PRPQIKRTASVSRITVDVRQEKGQQPYDDQNP--DTKEISRLEQDVVN------ 60
           M+LG   RPQIKRT S++ ITVD+   +   P D QNP  D    +R+E  V        
Sbjct: 1   MMLGKRARPQIKRTTSMTGITVDLGHVEAPAPADPQNPIKDVHAAARVENMVAGSNGYDP 60

Query: 61  -YTFAFASPRGRRSLSHN--SSLHFLRTCSFCQRRLSPARDIYMYMGDTAFCSMECREQS 120
            +  A  SPR  R  S     + HFLRTC  CQRRL P RDIYMY GDTAFCS+ECREQ 
Sbjct: 61  RFLAATVSPRIHRRSSGEFMETAHFLRTCGLCQRRLQPGRDIYMYRGDTAFCSLECREQQ 120

Query: 121 MEQEKCTTAGGGGGRAKE 127
           M+Q++      G    KE
Sbjct: 121 MKQDERKEKYSGMASKKE 138

[Close]

BLAST of CmoCh04G008590 vs. NCBI nr
Match: gi|470127350|ref|XP_004299635.1| (PREDICTED: uncharacterized protein LOC101315051 isoform X1 [Fragaria vesca subsp. vesca])

HSP 1 Score: 97.1 bits (240), Expect = 2.4e-17
Identity = 59/127 (46.46%), Postives = 73/127 (57.48%), Query Frame = 1


Query: 1   MLLGN-PRPQIKRTASVSRITVDVRQEKGQQPYDDQNPDTKEISRLEQDVVNYTFAFASP 60
           MLLG  PRP +KRT S+S IT D+  E   QP D  NP     S L  D +    A +S 
Sbjct: 1   MLLGKRPRPPMKRTTSMSEITFDLSTEAQPQPSDPLNP----FSPLAVDGLMVKMASSSS 60

Query: 61  RGRRSLSHNSS-----LHFLRTCSFCQRRLSPARDIYMYMGDTAFCSMECREQSM----E 118
              R+   NS+      HFLR C  C+RRL P RDIYMY GDTAFCS+ECR+Q M     
Sbjct: 61  PSPRNHRRNSADFVETPHFLRACGLCKRRLVPGRDIYMYRGDTAFCSLECRQQQMTLDER 120

[Close]

BLAST of CmoCh04G008590 vs. NCBI nr
Match: gi|703135491|ref|XP_010105883.1| (hypothetical protein L484_021540 [Morus notabilis])

HSP 1 Score: 95.5 bits (236), Expect = 7.1e-17
Identity = 60/136 (44.12%), Postives = 80/136 (58.82%), Query Frame = 1


Query: 1   MLLGN-PRPQIKRTASVSRITVDVR---QEKGQQPYDDQNPDTKEISRLEQDVV---NYT 60
           MLLG  PRP +KRT S++ IT D+    +    QP D  NP   ++ + +Q ++   N+ 
Sbjct: 1   MLLGKRPRPPMKRTTSMTEITFDLSTNDEMMSSQPSDPHNPFKVDVRQQDQRLLAAHNHN 60

Query: 61  ------FAFASPRGRRSLSHN--SSLHFLRTCSFCQRRLSPARDIYMYMGDTAFCSMECR 118
                    ASPR  R  S +   + HFLR+CS C+RRL P RDIYMY GD+AFCS+ECR
Sbjct: 61  NNNSNHMMMASPRNHRRNSADFVETSHFLRSCSLCRRRLVPNRDIYMYRGDSAFCSLECR 120

The following BLAST results are available for this feature:

BLAST of CmoCh04G008590 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh04G008590 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KUK1_CUCSA	8.4e-33	60.77	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G030990 PE=4 SV=1	[more]
W9SH55_9ROSA	4.9e-17	44.12	Uncharacterized protein OS=Morus notabilis GN=L484_021540 PE=4 SV=1	[more]
Q52KA1_ARATH	9.3e-16	46.03	At4g39795 OS=Arabidopsis thaliana GN=At4g39795 PE=2 SV=1	[more]
F4JW68_ARATH	9.3e-16	46.03	Uncharacterized protein OS=Arabidopsis thaliana GN=At4g39795 PE=4 SV=1	[more]
D7UEC0_VITVI	1.6e-15	45.04	Putative uncharacterized protein (Fragment) OS=Vitis vinifera GN=VIT_00s1003g000...	[more]

BLAST of CmoCh04G008590 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G39795.1	4.7e-19	46.03	Protein of unknown function (DUF581)	[more]
AT1G22160.1	7.5e-17	46.49	Protein of unknown function (DUF581)	[more]
AT1G78020.1	8.3e-16	36.62	Protein of unknown function (DUF581)	[more]
AT1G53885.1	3.4e-09	41.18	Protein of unknown function (DUF581)	[more]
AT1G53903.1	3.4e-09	41.18	Protein of unknown function (DUF581)	[more]

BLAST of CmoCh04G008590 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449462872\|ref\|XP_004149159.1\|	1.2e-32	60.77	PREDICTED: uncharacterized protein LOC101212822 [Cucumis sativus]	[more]
gi\|659107644\|ref\|XP_008453781.1\|	6.2e-29	58.46	PREDICTED: uncharacterized protein LOC103494409 [Cucumis melo]	[more]
gi\|359497432\|ref\|XP_003635513.1\|	3.4e-19	47.10	PREDICTED: uncharacterized protein LOC100261790 [Vitis vinifera]	[more]
gi\|470127350\|ref\|XP_004299635.1\|	2.4e-17	46.46	PREDICTED: uncharacterized protein LOC101315051 isoform X1 [Fragaria vesca subsp...	[more]
gi\|703135491\|ref\|XP_010105883.1\|	7.1e-17	44.12	hypothetical protein L484_021540 [Morus notabilis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR007650	Zf-FLZ_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh04G008590.1	CmoCh04G008590.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007650	Zf-FLZ domain	PFAM	PF04570	zf-FLZ	coord: 67..113 score: 2.9
None	No IPR available	PANTHER	PTHR33059	FAMILY NOT NAMED	coord: 17..113 score: 2.1
None	No IPR available	PANTHER	PTHR33059:SF4	F28K19.24-RELATED	coord: 17..113 score: 2.1

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh04G008590	Cucsa.029480	Cucumber (Gy14) v1	cgycmoB0001
CmoCh04G008590	Cucsa.104550	Cucumber (Gy14) v1	cgycmoB0229
CmoCh04G008590	CmaCh16G006830	Cucurbita maxima (Rimu)	cmacmoB337
CmoCh04G008590	CmaCh04G007990	Cucurbita maxima (Rimu)	cmacmoB728
CmoCh04G008590	Cla014160	Watermelon (97103) v1	cmowmB711
CmoCh04G008590	Cla014488	Watermelon (97103) v1	cmowmB671
CmoCh04G008590	Csa4G030990	Cucumber (Chinese Long) v2	cmocuB705
CmoCh04G008590	Csa6G500590	Cucumber (Chinese Long) v2	cmocuB768
CmoCh04G008590	MELO3C017582	Melon (DHL92) v3.5.1	cmomeB686
CmoCh04G008590	MELO3C007773	Melon (DHL92) v3.5.1	cmomeB702
CmoCh04G008590	ClCG01G018940	Watermelon (Charleston Gray)	cmowcgB641
CmoCh04G008590	ClCG07G009480	Watermelon (Charleston Gray)	cmowcgB670
CmoCh04G008590	CSPI04G04710	Wild cucumber (PI 183967)	cmocpiB715
CmoCh04G008590	CSPI06G30400	Wild cucumber (PI 183967)	cmocpiB775
CmoCh04G008590	Lsi07G001780	Bottle gourd (USVL1VR-Ls)	cmolsiB692
CmoCh04G008590	Lsi01G007480	Bottle gourd (USVL1VR-Ls)	cmolsiB628
CmoCh04G008590	Cp4.1LG14g01300	Cucurbita pepo (Zucchini)	cmocpeB667
CmoCh04G008590	Cp4.1LG01g09390	Cucurbita pepo (Zucchini)	cmocpeB673
CmoCh04G008590	MELO3C017582.2	Melon (DHL92) v3.6.1	cmomedB779
CmoCh04G008590	MELO3C007773.2	Melon (DHL92) v3.6.1	cmomedB801
CmoCh04G008590	CsaV3_4G004800	Cucumber (Chinese Long) v3	cmocucB0833
CmoCh04G008590	CsaV3_6G045620	Cucumber (Chinese Long) v3	cmocucB0909
CmoCh04G008590	CsaV3_UNG193490	Cucumber (Chinese Long) v3	cmocucB0896
CmoCh04G008590	Cla97C07G136290	Watermelon (97103) v2	cmowmbB748
CmoCh04G008590	Cla97C01G018410	Watermelon (97103) v2	cmowmbB682
CmoCh04G008590	Bhi01G001930	Wax gourd	cmowgoB0843
CmoCh04G008590	CsGy6G029900	Cucumber (Gy14) v2	cgybcmoB824
CmoCh04G008590	CsGy4G004650	Cucumber (Gy14) v2	cgybcmoB521
CmoCh04G008590	Carg05794	Silver-seed gourd	carcmoB1371
CmoCh04G008590	Carg14199	Silver-seed gourd	carcmoB1259

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh04G008590	CmoCh16G007410	Cucurbita moschata (Rifu)	cmocmoB285

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh04G008590	Cucurbita moschata (Rifu)	cmocmoB451
CmoCh04G008590	Wild cucumber (PI 183967)	cmocpiB714
CmoCh04G008590	Cucumber (Chinese Long) v2	cmocuB704
CmoCh04G008590	Cucurbita pepo (Zucchini)	cmocpeB655