CmoCh04G005950 (gene) Cucurbita moschata (Rifu)
The following sequences are available for this feature:
Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below.TCGGCTCTTCCGTTCCCTTTCGTGCTTCAATTTATCATCCTGATTTTGATTCTTAACAGCGCCTGCCAGCTACTTCTTATCTTGATTATTCTTCTGAATTTGAGCTTTAGGGTTCTTTCCCATCGGTAATTTAATGAATTTTGTTGATCTTCAATGTTTGATTGGGCCCCGGCCCCTTTTTGGGTGCGATTGTGGTGATGAAACTCAGTTTTTTGTTCGAGTTTTTTCAGGATTCACTGATATTTGTCCTGCTCTTTCATCGGCTGTAATCGTCTTTGATGTATTGACGCGTTTGATCGCTCAATTTGATAATGACTTCAAGGTACCTGATTTTGGTTTCAGAGTCCTTTTCTTTATCTCTGTTTAGATTTTCTTGCGAATTGGTTTTTTCTTGTTGGATTGGTGTGAGCCGTTGAGGATTAGTGGAGAAATTCGTGAATATTTTCGATCTAGATTTTAAGAATGGACTGGTTTTTATTTGAGTCTCACTTAAGGTGTATCTGCTATGATGCTTTGAATCTTTTGTGGTTTTGATTGCTTAGAAATTCTCGTATGTGGTGGTTTATATTCTCTTGGATGGTAGAATTTTGGAATGAATGACGATGTGCAACGTTTTCTTTATGAAAAGGCAGGTTAATAGAAGAGAAATCTCAGATTTACTGAACAAAATACCTGGACCCTAGTAAAGTTCTGCCTTAGATTTCTTGTTTTGGATCATGATCCCTTATTGATCGCAGTGAATCCGGCCTCATATCCTAGTTAGCGGCGCATTCATCATAGTTAGAAGCTCCAACTCCATATCAAGGTCACGGTCGATATCAACACTATCATAAATATCGTCACTATCATCAATAAGAAAACCCTTAGGGTTGTTATCCGGGAACTTGTTCAGAAATACTATAATGAAAGGAAGATAGAAGTTTGTCGCTAGGTATTTGACCAAATAGGATCGTGCTTATAGGATCATAGAATACATGGCTGTGCAGGGAACGTCTATGCTATTATATTCTCTGCAGGATTTTGAATGGTTGTCTAAGTTAATGCTTATGCTTAGTTGGTTAGCTTAGAATTTAAAATCAAAGATTAACTCTGGTGTTTCTTAAGTAGCTGGTGGTTACTTGGTATCAGTAGACGTGGGTACCCATACGTCGACATCAGATGAGTACATCTTTCAATTATGGCTTCTTAATCCGATGTCTAATTCAGGCTCTGAGGGGTGTTTAGTAAGAGGAGATGTTTATTTCTTCAAATGGTTTCTGTTTCAAATAAACATAGACAACTGATAGCAATGGTATTAGGTTGGTTATGGATGTTATTAGAGTGTTTGGGTTATTGGCTCGAGGAGTTCGTTAGTAGGAGTCGATTTGGGCGAAGAGAAAGCTCGACAATTGCTTTGATGGTTTTGGCTGAGTGTGTATACTCAAAAGAGGGGAGGATCCAAACTCCAAGTACCTCAAATACTTGGATTATATTGTAGCTCTTCTATCTATTTTATTTCAATATTGTTCTAGTTGACTGGGTTCTATGAACATCAAAGCTACCTACTCCTTGTCAGTTTATAGTTTTCTCTCTACCATCTATGTGAAATCCCACGTCCGTTAGGGAGGAGAACGAAGCATTCTTTATAAGGGTGTGGAAACTTTTCCCTATCAGATGCGTTTTAAAAACCTTGAGAGGAAGTCCGAAAGGGAAAGCCCAAAGAGGGACAATATCTACTAGCGAGCTATTACAAATGGCATCAGAGCCAGACACTGGACGATGTGTCAGCGAGCAGGTAGAGCCCCGAAGGGGGGTGGACACAAGGCGGTGTGCCAGCAAGGATGCTAGGCCCCGAAAGGGGGTGGATTGGGGGCCCCACATCGATTGGAGAAGGGCGTGATTGCCAGCGAAGGCGCTGGGCACCGTATTGGGGTGGATTGTGAGATCCCACATCGGTTGGGGAGGAGAACGAAACATTCTTTATAAGAGTGTGGAAACCTCTTCCTAGCAAACGCGTTTTAAAAACCTTGAGGAGAAACTCGAAAGGGAAAGTCCAAAGAGAACAATATATGCTAGCGTTGGGCTTGAGCCGTTATAATCTTGTTCTCTACTTTTTCCACTGATAAGAAAGTTAGTACATTATCCTCTTAATTTGTCCTTAGTACATCGTCTTCTTAATTTGTCCTTGTTATTTTCATCTGTCTAAATTGCTGTCCGTAAGTTCATTTTCGTTTTGTTTTCTGGTTCGCCGGACTTTCTTTATTTTATAAAACGTTCTTTTCGGTTTAGCCTTTATATTTGATCTCTACATTCCCATTACAAATGATACAAGTATTTGCCCAGTTATATCTGTCGAATTCTACTGATTTTTGGTACATTTTCCATCGTACATTGAAACATAGTTCGTCTTCTGAATTCTTCCTCGGTTTCTATTTTGTCTGGTTTCTTTCCTTACAATGGCTAGCAGTTGGAGAAGAACGGTTGGGAATGTCAGGTCCTTCATCGGCAACTCCATGGGCGGTCTCAGAGGCGGTACCAATCTTGCTTCCTGGGTAGTCGCTGGAACACTTGCCTACTTCCTCTGGGTCAAGCCCTCCCAAGACCTCAAACGCGAACAGCAAGAAAGAGCTGCTCTTGCAGCCACGGATCCTTATCGATACATCGAGAAGAGGAAACCTATTCCTGATCCCCAGGAGACTGGTTTGATATATGGCAACAAGAATAAACCTAAAAAATCAGAGGAGTAA TCGGCTCTTCCGTTCCCTTTCGTGCTTCAATTTATCATCCTGATTTTGATTCTTAACAGCGCCTGCCAGCTACTTCTTATCTTGATTATTCTTCTGAATTTGAGCTTTAGGGTTCTTTCCCATCGTTTTTTGTTCGAGTTTTTTCAGGATTCACTGATATTTGTCCTGCTCTTTCATCGGCTGTAATCGTCTTTGATGTATTGACGCGTTTGATCGCTCAATTTGATAATGACTTCAAGTTGGAGAAGAACGGTTGGGAATGTCAGGTCCTTCATCGGCAACTCCATGGGCGGTCTCAGAGGCGGTACCAATCTTGCTTCCTGGGTAGTCGCTGGAACACTTGCCTACTTCCTCTGGGTCAAGCCCTCCCAAGACCTCAAACGCGAACAGCAAGAAAGAGCTGCTCTTGCAGCCACGGATCCTTATCGATACATCGAGAAGAGGAAACCTATTCCTGATCCCCAGGAGACTGGTTTGATATATGGCAACAAGAATAAACCTAAAAAATCAGAGGAGTAA ATGACTTCAAGTTGGAGAAGAACGGTTGGGAATGTCAGGTCCTTCATCGGCAACTCCATGGGCGGTCTCAGAGGCGGTACCAATCTTGCTTCCTGGGTAGTCGCTGGAACACTTGCCTACTTCCTCTGGGTCAAGCCCTCCCAAGACCTCAAACGCGAACAGCAAGAAAGAGCTGCTCTTGCAGCCACGGATCCTTATCGATACATCGAGAAGAGGAAACCTATTCCTGATCCCCAGGAGACTGGTTTGATATATGGCAACAAGAATAAACCTAAAAAATCAGAGGAGTAA
BLAST of CmoCh04G005950 vs. TrEMBL
Match: A0A067KP46_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08029 PE=4 SV=1) HSP 1 Score: 181.0 bits (458), Expect = 6.7e-43 Identity = 87/96 (90.62%), Postives = 92/96 (95.83%), Query Frame = 1
BLAST of CmoCh04G005950 vs. TrEMBL
Match: A0A0A0KZ01_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G089280 PE=4 SV=1) HSP 1 Score: 177.9 bits (450), Expect = 5.7e-42 Identity = 85/95 (89.47%), Postives = 91/95 (95.79%), Query Frame = 1
BLAST of CmoCh04G005950 vs. TrEMBL
Match: V4TG86_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10002952mg PE=4 SV=1) HSP 1 Score: 175.6 bits (444), Expect = 2.8e-41 Identity = 82/96 (85.42%), Postives = 91/96 (94.79%), Query Frame = 1
BLAST of CmoCh04G005950 vs. TrEMBL
Match: A0A067H099_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g034394mg PE=4 SV=1) HSP 1 Score: 175.6 bits (444), Expect = 2.8e-41 Identity = 82/96 (85.42%), Postives = 91/96 (94.79%), Query Frame = 1
BLAST of CmoCh04G005950 vs. TrEMBL
Match: B9H5W7_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s27840g PE=4 SV=1) HSP 1 Score: 174.1 bits (440), Expect = 8.2e-41 Identity = 80/96 (83.33%), Postives = 92/96 (95.83%), Query Frame = 1
BLAST of CmoCh04G005950 vs. TAIR10
Match: AT2G33585.1 (AT2G33585.1 unknown protein) HSP 1 Score: 151.8 bits (382), Expect = 2.2e-37 Identity = 72/96 (75.00%), Postives = 82/96 (85.42%), Query Frame = 1
BLAST of CmoCh04G005950 vs. NCBI nr
Match: gi|778691658|ref|XP_011653322.1| (PREDICTED: uncharacterized protein LOC101205325 isoform X3 [Cucumis sativus]) HSP 1 Score: 181.4 bits (459), Expect = 7.4e-43 Identity = 87/96 (90.62%), Postives = 92/96 (95.83%), Query Frame = 1
BLAST of CmoCh04G005950 vs. NCBI nr
Match: gi|802604326|ref|XP_012073563.1| (PREDICTED: uncharacterized protein LOC105635169 [Jatropha curcas]) HSP 1 Score: 181.0 bits (458), Expect = 9.7e-43 Identity = 87/96 (90.62%), Postives = 92/96 (95.83%), Query Frame = 1
BLAST of CmoCh04G005950 vs. NCBI nr
Match: gi|659101598|ref|XP_008451691.1| (PREDICTED: uncharacterized protein LOC103492913 isoform X3 [Cucumis melo]) HSP 1 Score: 180.3 bits (456), Expect = 1.6e-42 Identity = 87/96 (90.62%), Postives = 91/96 (94.79%), Query Frame = 1
BLAST of CmoCh04G005950 vs. NCBI nr
Match: gi|449438867|ref|XP_004137209.1| (PREDICTED: uncharacterized protein LOC101205325 isoform X2 [Cucumis sativus]) HSP 1 Score: 177.9 bits (450), Expect = 8.2e-42 Identity = 85/95 (89.47%), Postives = 91/95 (95.79%), Query Frame = 1
BLAST of CmoCh04G005950 vs. NCBI nr
Match: gi|778691650|ref|XP_011653320.1| (PREDICTED: uncharacterized protein LOC101205325 isoform X1 [Cucumis sativus]) HSP 1 Score: 177.9 bits (450), Expect = 8.2e-42 Identity = 85/95 (89.47%), Postives = 91/95 (95.79%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
The following gene(s) are orthologous to this gene: The following gene(s) are paralogous to this gene:
The following block(s) are covering this gene: None |