Cla002421 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla002421
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Unknown Protein (AHRD V1)
Location	Chr7 : 23462539 .. 23462772 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTGGTCTCAGAGGTGGTGCCAATCTCGCTTCTTGGGTCGTCGCTGGAACCGTCGCTTACTTCCTTTGGGTCAAGCCCTCCCAAGACCTCAAACGGGAACAGCAGGAAAGGGCTGCTCTTGCAGCTGTGGATCCTCATCGATATATTGAGAAGAGGAAACCTATTCCTGATCCCCAGGAAACTGGTTTGATATACGGCAACAAGAATACGCCTCGAAAACCCGAGGAATAA

mRNA sequence

ATGGGTGGTCTCAGAGGTGGTGCCAATCTCGCTTCTTGGGTCGTCGCTGGAACCGTCGCTTACTTCCTTTGGGTCAAGCCCTCCCAAGACCTCAAACGGGAACAGCAGGAAAGGGCTGCTCTTGCAGCTGTGGATCCTCATCGATATATTGAGAAGAGGAAACCTATTCCTGATCCCCAGGAAACTGGTTTGATATACGGCAACAAGAATACGCCTCGAAAACCCGAGGAATAA

Coding sequence (CDS)

ATGGGTGGTCTCAGAGGTGGTGCCAATCTCGCTTCTTGGGTCGTCGCTGGAACCGTCGCTTACTTCCTTTGGGTCAAGCCCTCCCAAGACCTCAAACGGGAACAGCAGGAAAGGGCTGCTCTTGCAGCTGTGGATCCTCATCGATATATTGAGAAGAGGAAACCTATTCCTGATCCCCAGGAAACTGGTTTGATATACGGCAACAAGAATACGCCTCGAAAACCCGAGGAATAA

Protein sequence

MGGLRGGANLASWVVAGTVAYFLWVKPSQDLKREQQERAALAAVDPHRYIEKRKPIPDPQETGLIYGNKNTPRKPEE

Homology

[Close]

BLAST of Cla002421 vs. TrEMBL
Match: A0A0A0KZ01_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G089280 PE=4 SV=1)

HSP 1 Score: 160.2 bits (404), Expect = 9.9e-37
Identity = 75/77 (97.40%), Postives = 77/77 (100.00%), Query Frame = 1


Query: 1  MGGLRGGANLASWVVAGTVAYFLWVKPSQDLKREQQERAALAAVDPHRYIEKRKPIPDPQ 60
          MGGLRGGANLASWVVAGT+AY+LWVKPSQDLKREQQERAALAAVDPHRYIEKRKPIPDPQ
Sbjct: 21 MGGLRGGANLASWVVAGTLAYYLWVKPSQDLKREQQERAALAAVDPHRYIEKRKPIPDPQ 80

Query: 61 ETGLIYGNKNTPRKPEE 78
          ETGLIYGNKNTPRKPEE
Sbjct: 81 ETGLIYGNKNTPRKPEE 97

[Close]

BLAST of Cla002421 vs. TrEMBL
Match: M5XGC1_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013926mg PE=4 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 2.3e-33
Identity = 68/77 (88.31%), Postives = 73/77 (94.81%), Query Frame = 1


Query: 1  MGGLRGGANLASWVVAGTVAYFLWVKPSQDLKREQQERAALAAVDPHRYIEKRKPIPDPQ 60
          MGGLRGG+NLASWVVAGT+AYFLWVKPSQDLKREQQERAALA+ DPH Y+EKRKP+PDPQ
Sbjct: 20 MGGLRGGSNLASWVVAGTLAYFLWVKPSQDLKREQQERAALASADPHAYVEKRKPVPDPQ 79

Query: 61 ETGLIYGNKNTPRKPEE 78
          ETGLIYGNKN  RKPEE
Sbjct: 80 ETGLIYGNKNRTRKPEE 96

[Close]

BLAST of Cla002421 vs. TrEMBL
Match: A0A067KP46_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08029 PE=4 SV=1)

HSP 1 Score: 146.7 bits (369), Expect = 1.1e-32
Identity = 68/77 (88.31%), Postives = 73/77 (94.81%), Query Frame = 1


Query: 1  MGGLRGGANLASWVVAGTVAYFLWVKPSQDLKREQQERAALAAVDPHRYIEKRKPIPDPQ 60
          MGGLRGG+NLASWVVAGT+AYFLWVKPSQDLKREQQERAALAA DP+RY+EKRKPIPDPQ
Sbjct: 20 MGGLRGGSNLASWVVAGTLAYFLWVKPSQDLKREQQERAALAAADPYRYVEKRKPIPDPQ 79

Query: 61 ETGLIYGNKNTPRKPEE 78
          ETGLIYGNKN  +KP E
Sbjct: 80 ETGLIYGNKNKTKKPVE 96

[Close]

BLAST of Cla002421 vs. TrEMBL
Match: V4TG86_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10002952mg PE=4 SV=1)

HSP 1 Score: 145.2 bits (365), Expect = 3.3e-32
Identity = 67/77 (87.01%), Postives = 74/77 (96.10%), Query Frame = 1


Query: 1  MGGLRGGANLASWVVAGTVAYFLWVKPSQDLKREQQERAALAAVDPHRYIEKRKPIPDPQ 60
          MGG+RGGANLASWVVAGT+AY+LWVKPSQDLKREQ+ERAALAA+DP+RY+EKRKPIPDPQ
Sbjct: 20 MGGVRGGANLASWVVAGTLAYYLWVKPSQDLKREQEERAALAALDPNRYVEKRKPIPDPQ 79

Query: 61 ETGLIYGNKNTPRKPEE 78
          ETGLIYGNKN  RK EE
Sbjct: 80 ETGLIYGNKNRSRKSEE 96

[Close]

BLAST of Cla002421 vs. TrEMBL
Match: A0A067H099_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g034394mg PE=4 SV=1)

HSP 1 Score: 145.2 bits (365), Expect = 3.3e-32
Identity = 67/77 (87.01%), Postives = 74/77 (96.10%), Query Frame = 1


Query: 1  MGGLRGGANLASWVVAGTVAYFLWVKPSQDLKREQQERAALAAVDPHRYIEKRKPIPDPQ 60
          MGG+RGGANLASWVVAGT+AY+LWVKPSQDLKREQ+ERAALAA+DP+RY+EKRKPIPDPQ
Sbjct: 20 MGGVRGGANLASWVVAGTLAYYLWVKPSQDLKREQEERAALAALDPNRYVEKRKPIPDPQ 79

Query: 61 ETGLIYGNKNTPRKPEE 78
          ETGLIYGNKN  RK EE
Sbjct: 80 ETGLIYGNKNRSRKSEE 96

[Close]

BLAST of Cla002421 vs. NCBI nr
Match: gi|449438867|ref|XP_004137209.1| (PREDICTED: uncharacterized protein LOC101205325 isoform X2 [Cucumis sativus])

HSP 1 Score: 160.2 bits (404), Expect = 1.4e-36
Identity = 75/77 (97.40%), Postives = 77/77 (100.00%), Query Frame = 1


Query: 1  MGGLRGGANLASWVVAGTVAYFLWVKPSQDLKREQQERAALAAVDPHRYIEKRKPIPDPQ 60
          MGGLRGGANLASWVVAGT+AY+LWVKPSQDLKREQQERAALAAVDPHRYIEKRKPIPDPQ
Sbjct: 21 MGGLRGGANLASWVVAGTLAYYLWVKPSQDLKREQQERAALAAVDPHRYIEKRKPIPDPQ 80

Query: 61 ETGLIYGNKNTPRKPEE 78
          ETGLIYGNKNTPRKPEE
Sbjct: 81 ETGLIYGNKNTPRKPEE 97

[Close]

BLAST of Cla002421 vs. NCBI nr
Match: gi|778691650|ref|XP_011653320.1| (PREDICTED: uncharacterized protein LOC101205325 isoform X1 [Cucumis sativus])

HSP 1 Score: 160.2 bits (404), Expect = 1.4e-36
Identity = 75/77 (97.40%), Postives = 77/77 (100.00%), Query Frame = 1


Query: 1  MGGLRGGANLASWVVAGTVAYFLWVKPSQDLKREQQERAALAAVDPHRYIEKRKPIPDPQ 60
          MGGLRGGANLASWVVAGT+AY+LWVKPSQDLKREQQERAALAAVDPHRYIEKRKPIPDPQ
Sbjct: 22 MGGLRGGANLASWVVAGTLAYYLWVKPSQDLKREQQERAALAAVDPHRYIEKRKPIPDPQ 81

Query: 61 ETGLIYGNKNTPRKPEE 78
          ETGLIYGNKNTPRKPEE
Sbjct: 82 ETGLIYGNKNTPRKPEE 98

[Close]

BLAST of Cla002421 vs. NCBI nr
Match: gi|778691658|ref|XP_011653322.1| (PREDICTED: uncharacterized protein LOC101205325 isoform X3 [Cucumis sativus])

HSP 1 Score: 160.2 bits (404), Expect = 1.4e-36
Identity = 75/77 (97.40%), Postives = 77/77 (100.00%), Query Frame = 1


Query: 1  MGGLRGGANLASWVVAGTVAYFLWVKPSQDLKREQQERAALAAVDPHRYIEKRKPIPDPQ 60
          MGGLRGGANLASWVVAGT+AY+LWVKPSQDLKREQQERAALAAVDPHRYIEKRKPIPDPQ
Sbjct: 20 MGGLRGGANLASWVVAGTLAYYLWVKPSQDLKREQQERAALAAVDPHRYIEKRKPIPDPQ 79

Query: 61 ETGLIYGNKNTPRKPEE 78
          ETGLIYGNKNTPRKPEE
Sbjct: 80 ETGLIYGNKNTPRKPEE 96

[Close]

BLAST of Cla002421 vs. NCBI nr
Match: gi|659101596|ref|XP_008451690.1| (PREDICTED: uncharacterized protein LOC103492913 isoform X2 [Cucumis melo])

HSP 1 Score: 158.7 bits (400), Expect = 4.1e-36
Identity = 74/77 (96.10%), Postives = 77/77 (100.00%), Query Frame = 1


Query: 1  MGGLRGGANLASWVVAGTVAYFLWVKPSQDLKREQQERAALAAVDPHRYIEKRKPIPDPQ 60
          MGGLRGGANLASWVVAGT+AY+LWVKPSQDLKREQQERAALAAVDPHRYIEKRKPIPDPQ
Sbjct: 21 MGGLRGGANLASWVVAGTLAYYLWVKPSQDLKREQQERAALAAVDPHRYIEKRKPIPDPQ 80

Query: 61 ETGLIYGNKNTPRKPEE 78
          ETGLIYGNKNTP+KPEE
Sbjct: 81 ETGLIYGNKNTPQKPEE 97

[Close]

BLAST of Cla002421 vs. NCBI nr
Match: gi|659101598|ref|XP_008451691.1| (PREDICTED: uncharacterized protein LOC103492913 isoform X3 [Cucumis melo])

HSP 1 Score: 158.7 bits (400), Expect = 4.1e-36
Identity = 74/77 (96.10%), Postives = 77/77 (100.00%), Query Frame = 1


Query: 1  MGGLRGGANLASWVVAGTVAYFLWVKPSQDLKREQQERAALAAVDPHRYIEKRKPIPDPQ 60
          MGGLRGGANLASWVVAGT+AY+LWVKPSQDLKREQQERAALAAVDPHRYIEKRKPIPDPQ
Sbjct: 20 MGGLRGGANLASWVVAGTLAYYLWVKPSQDLKREQQERAALAAVDPHRYIEKRKPIPDPQ 79

Query: 61 ETGLIYGNKNTPRKPEE 78
          ETGLIYGNKNTP+KPEE
Sbjct: 80 ETGLIYGNKNTPQKPEE 96

The following BLAST results are available for this feature:

BLAST of Cla002421 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KZ01_CUCSA	9.9e-37	97.40	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G089280 PE=4 SV=1	[more]
M5XGC1_PRUPE	2.3e-33	88.31	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013926mg PE=4 SV=1	[more]
A0A067KP46_JATCU	1.1e-32	88.31	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08029 PE=4 SV=1	[more]
V4TG86_9ROSI	3.3e-32	87.01	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10002952mg PE=4 SV=1	[more]
A0A067H099_CITSI	3.3e-32	87.01	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g034394mg PE=4 SV=1	[more]

BLAST of Cla002421 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449438867\|ref\|XP_004137209.1\|	1.4e-36	97.40	PREDICTED: uncharacterized protein LOC101205325 isoform X2 [Cucumis sativus]	[more]
gi\|778691650\|ref\|XP_011653320.1\|	1.4e-36	97.40	PREDICTED: uncharacterized protein LOC101205325 isoform X1 [Cucumis sativus]	[more]
gi\|778691658\|ref\|XP_011653322.1\|	1.4e-36	97.40	PREDICTED: uncharacterized protein LOC101205325 isoform X3 [Cucumis sativus]	[more]
gi\|659101596\|ref\|XP_008451690.1\|	4.1e-36	96.10	PREDICTED: uncharacterized protein LOC103492913 isoform X2 [Cucumis melo]	[more]
gi\|659101598\|ref\|XP_008451691.1\|	4.1e-36	96.10	PREDICTED: uncharacterized protein LOC103492913 isoform X3 [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006508	proteolysis
biological_process	GO:0008150	biological_process
cellular_component	GO:0005739	mitochondrion
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0008233	peptidase activity
molecular_function	GO:0003674	molecular_function

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
WMU17594	watermelon unigene v2 vs TrEMBL	transcribed_cluster
WMU47356	watermelon EST collection version 2.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla002421	Cla002421.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
WMU17594	WMU17594	transcribed_cluster
WMU47356	WMU47356	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR37213	FAMILY NOT NAMED	coord: 1..77 score: 2.0
None	No IPR available	PANTHER	PTHR37213:SF1	SUBFAMILY NOT NAMED	coord: 1..77 score: 2.0

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla002421	Csa4G089280	Cucumber (Chinese Long) v2	cuwmB314
Cla002421	MELO3C016084	Melon (DHL92) v3.5.1	mewmB509
Cla002421	ClCG07G009870	Watermelon (Charleston Gray)	wcgwmB364
Cla002421	CSPI04G08230	Wild cucumber (PI 183967)	cpiwmB317
Cla002421	Cucsa.273390	Cucumber (Gy14) v1	cgywmB503
Cla002421	CmaCh04G005590	Cucurbita maxima (Rimu)	cmawmB683
Cla002421	CmaCh16G004130	Cucurbita maxima (Rimu)	cmawmB311
Cla002421	CmoCh04G005950	Cucurbita moschata (Rifu)	cmowmB679
Cla002421	CmoCh16G004450	Cucurbita moschata (Rifu)	cmowmB305
Cla002421	Lsi07G003090	Bottle gourd (USVL1VR-Ls)	lsiwmB445
Cla002421	Cp4.1LG14g03800	Cucurbita pepo (Zucchini)	cpewmB222
Cla002421	Cp4.1LG01g01620	Cucurbita pepo (Zucchini)	cpewmB410
Cla002421	CsGy4G008130	Cucumber (Gy14) v2	cgybwmB292
Cla002421	MELO3C016084.2	Melon (DHL92) v3.6.1	medwmB495
Cla002421	Carg13177	Silver-seed gourd	carwmB0046
Cla002421	Carg11344	Silver-seed gourd	carwmB0653
Cla002421	CsaV3_4G008460	Cucumber (Chinese Long) v3	cucwmB326
Cla002421	Bhi01G002527	Wax gourd	wgowmB181

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla002421	Watermelon (97103) v2	wmwmbB166
Cla002421	Wax gourd	wgowmB199