CmoCh03G001840 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh03G001840
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionEarly response to dehydration 15-like protein
LocationCmo_Chr03 : 2866956 .. 2867282 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTCTAGCATCTGTTGATGGAAGATCAAAGCTAAACCCGAACGCCCCACTTTTCATCCCGGCTGCATACCAGGTGGAGGACTTCTCCCCGCAATGGTGGCAATTGGTCACAACCTCGACATGGTACCGCAATTACTGGCTCAGCCAACACCAGGAAGACGGTGACTTCTACATGGACGGCGAAGATGATTTGAGTAACGACATTGCTGATTTTTTGCCAGAGGCATTCGATCTCGATGCAAATGAAGAACTGCGCACCATGGAAGCTGAATTTGAGGAGTTCATTCAAGCTTCCCTTACTGAAGGGTACCACCTCGAGAAGTAG

mRNA sequence

ATGGCTCTAGCATCTGTTGATGGAAGATCAAAGCTAAACCCGAACGCCCCACTTTTCATCCCGGCTGCATACCAGGTGGAGGACTTCTCCCCGCAATGGTGGCAATTGGTCACAACCTCGACATGGTACCGCAATTACTGGCTCAGCCAACACCAGGAAGACGGTGACTTCTACATGGACGGCGAAGATGATTTGAGTAACGACATTGCTGATTTTTTGCCAGAGGCATTCGATCTCGATGCAAATGAAGAACTGCGCACCATGGAAGCTGAATTTGAGGAGTTCATTCAAGCTTCCCTTACTGAAGGGTACCACCTCGAGAAGTAG

Coding sequence (CDS)

ATGGCTCTAGCATCTGTTGATGGAAGATCAAAGCTAAACCCGAACGCCCCACTTTTCATCCCGGCTGCATACCAGGTGGAGGACTTCTCCCCGCAATGGTGGCAATTGGTCACAACCTCGACATGGTACCGCAATTACTGGCTCAGCCAACACCAGGAAGACGGTGACTTCTACATGGACGGCGAAGATGATTTGAGTAACGACATTGCTGATTTTTTGCCAGAGGCATTCGATCTCGATGCAAATGAAGAACTGCGCACCATGGAAGCTGAATTTGAGGAGTTCATTCAAGCTTCCCTTACTGAAGGGTACCACCTCGAGAAGTAG
Homology
[Close]
BLAST of CmoCh03G001840 vs. Swiss-Prot
Match: ERD15_ARATH (Protein EARLY RESPONSIVE TO DEHYDRATION 15 OS=Arabidopsis thaliana GN=ERD15 PE=1 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 2.4e-21
Identity = 58/99 (58.59%), Postives = 72/99 (72.73%), Query Frame = 1 

Query: 3  LASVDGR-SKLNPNAPLFIPAAY-QVEDFSPQWWQLVTTSTWYRNYWLSQHQEDGD-FYM 62
          +A V GR S LNP+APLFIPAA  QVEDFSP+WWQLVTTSTWY +YW+SQ Q+  D FY 
Sbjct: 1  MAMVSGRRSTLNPDAPLFIPAAVRQVEDFSPEWWQLVTTSTWYPDYWISQQQQGADGFYD 60

Query: 63 DGEDDLSN---DIADFLPEAFDLDANEE-LRTMEAEFEE 95
          +GE++      D+AD LPE+FD D  E+   T  AEF++
Sbjct: 61 NGENENGGGHIDVADLLPESFDFDDMEDFFDTDAAEFDQ 99

[Close]
BLAST of CmoCh03G001840 vs. Swiss-Prot
Match: CID2_ARATH (Polyadenylate-binding protein-interacting protein 2 OS=Arabidopsis thaliana GN=CID2 PE=2 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 9.9e-12
Identity = 44/98 (44.90%), Postives = 57/98 (58.16%), Query Frame = 1 

Query: 4   ASVDGR-SKLNPNAPLFIPAAY-QVEDFSPQWWQLVTTSTWYRNYWLSQHQEDGDFYMDG 63
           A++D R S LNPNAP+F P  + +VEDFSP+WW LVTTS W+R++WLS + E+ +F   G
Sbjct: 3   ATIDRRLSTLNPNAPVFDPVEFREVEDFSPKWWDLVTTSKWFRDFWLSANSEN-EFL--G 62

Query: 64  EDDLSNDIADFLPEAFDLDANEELRTMEAEFEEFIQAS 100
            DD S                     ME EFEE I +S
Sbjct: 63  GDDFS--------------------VMEEEFEEMIASS 77

[Close]
BLAST of CmoCh03G001840 vs. TrEMBL
Match: Q6ELF8_CUCSA (Poly(A)-binding protein C-terminal interacting protein 243 OS=Cucumis sativus GN=Csa_4G214830 PE=2 SV=1)

HSP 1 Score: 201.1 bits (510), Expect = 7.1e-49
Identity = 98/110 (89.09%), Postives = 103/110 (93.64%), Query Frame = 1 

Query: 1   MALASVDGRSKLNPNAPLFIPAAYQVEDFSPQWWQLVTTSTWYRNYWLSQHQEDGDFYMD 60
           MALASV+G SKLNPNAPLFIPAAYQVEDFSPQWWQLVTTSTWYR+YWLSQHQE+ DFY+D
Sbjct: 1   MALASVEGSSKLNPNAPLFIPAAYQVEDFSPQWWQLVTTSTWYRDYWLSQHQEESDFYID 60

Query: 61  --GEDDLSNDIADFLPEAFDLDANEELRTMEAEFEEFIQASLTEGYHLEK 109
             GEDD SNDIA+FLPEAFDLDANEELRTMEAEFEEFIQASL EGYH EK
Sbjct: 61  GEGEDDFSNDIAEFLPEAFDLDANEELRTMEAEFEEFIQASLNEGYHPEK 110

[Close]
BLAST of CmoCh03G001840 vs. TrEMBL
Match: W9S851_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_015513 PE=4 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 1.5e-30
Identity = 69/104 (66.35%), Postives = 83/104 (79.81%), Query Frame = 1 

Query: 1   MALASVDGRSKLNPNAPLFIPAAY-QVEDFSPQWWQLVTTSTWYRNYWLSQHQEDGDFYM 60
           MAL S  GRS LNPNAPLFIPAA+ QVEDFSP+WWQL+TTS WY +YWLSQHQ++  FY 
Sbjct: 1   MALVS-GGRSTLNPNAPLFIPAAFRQVEDFSPEWWQLITTSPWYHDYWLSQHQDEDAFYS 60

Query: 61  DGEDDLSNDIADFLPEAFDLDANEELRTMEAEFEEFIQASLTEG 104
           + +DD+ N +AD LPE FDLDA +E   +EA+FEEFI+ S TEG
Sbjct: 61  NADDDIDN-VADLLPETFDLDAGDEFSNIEAQFEEFIEFSETEG 102

[Close]
BLAST of CmoCh03G001840 vs. TrEMBL
Match: A0A067K1V9_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22456 PE=4 SV=1)

HSP 1 Score: 135.6 bits (340), Expect = 3.6e-29
Identity = 67/105 (63.81%), Postives = 84/105 (80.00%), Query Frame = 1 

Query: 1   MALASVDGRSKLNPNAPLFIPAAYQ-VEDFSPQWWQLVTTSTWYRNYWLSQHQEDGDFYM 60
           MAL S  GRS LNP+APLFIPAAYQ VEDFSP+WWQLVTTSTWYR+YWLSQHQ++  FY 
Sbjct: 1   MALVS-GGRSTLNPDAPLFIPAAYQQVEDFSPEWWQLVTTSTWYRDYWLSQHQDEEGFYD 60

Query: 61  DGEDDLSN--DIADFLPEAFDLDANEELRTMEAEFEEFIQASLTE 103
           + EDD  +  D+AD LP+ FDLDA E+  T+E +F+EF+++  T+
Sbjct: 61  NAEDDSYDACDVADLLPDTFDLDAGEDFSTLEVQFQEFVESYQTD 104

[Close]
BLAST of CmoCh03G001840 vs. TrEMBL
Match: A0A061EXG3_THECC (Dehydration-induced protein, putative OS=Theobroma cacao GN=TCM_024484 PE=4 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 6.2e-29
Identity = 69/101 (68.32%), Postives = 81/101 (80.20%), Query Frame = 1 

Query: 1   MALASVDGRSKLNPNAPLFIPAAY-QVEDFSPQWWQLVTTSTWYRNYWLSQHQEDGDFYM 60
           MAL +  GRS LNPNAPLFIPA Y QVEDFSP+WWQLVTTSTWYR+YWLSQHQ++  FY 
Sbjct: 1   MALVA-GGRSTLNPNAPLFIPAVYRQVEDFSPEWWQLVTTSTWYRDYWLSQHQDEDGFYD 60

Query: 61  DGEDD--LSNDIADFLPEAFDLDANEELRTMEAEFEEFIQA 99
           + EDD    NDIAD LP+ FDL A+E+L  M+ +FEEFIQ+
Sbjct: 61  NAEDDGFDGNDIADLLPDTFDLVADEDLSGMDLQFEEFIQS 100

[Close]
BLAST of CmoCh03G001840 vs. TrEMBL
Match: B9SVS1_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0255020 PE=4 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 1.4e-28
Identity = 70/111 (63.06%), Postives = 82/111 (73.87%), Query Frame = 1 

Query: 1   MALASVDGRSKLNPNAPLFIPAAY-QVEDFSPQWWQLVTTSTWYRNYWLSQHQEDGDFYM 60
           MAL S  GRS LNP+APLFIPAAY QVEDFSP+WWQLVT STWYR+YWLSQHQ++  FY 
Sbjct: 1   MALVS-GGRSTLNPDAPLFIPAAYRQVEDFSPEWWQLVTNSTWYRDYWLSQHQDEDGFYD 60

Query: 61  DGEDDL---SNDIADFLPEAFDLDANEELRTMEAEFEEFIQASLTEGYHLE 108
           + EDD     ND+ D LPE FDLDA E   ++EA+F EF+ +  TE   LE
Sbjct: 61  NAEDDEGFDGNDVVDLLPETFDLDAGEYFSSLEAQFHEFVDSYETEVDGLE 110

[Close]
BLAST of CmoCh03G001840 vs. TAIR10
Match: AT2G41430.1 (AT2G41430.1 dehydration-induced protein (ERD15))

HSP 1 Score: 102.8 bits (255), Expect = 1.3e-22
Identity = 58/99 (58.59%), Postives = 72/99 (72.73%), Query Frame = 1 

Query: 3  LASVDGR-SKLNPNAPLFIPAAY-QVEDFSPQWWQLVTTSTWYRNYWLSQHQEDGD-FYM 62
          +A V GR S LNP+APLFIPAA  QVEDFSP+WWQLVTTSTWY +YW+SQ Q+  D FY 
Sbjct: 1  MAMVSGRRSTLNPDAPLFIPAAVRQVEDFSPEWWQLVTTSTWYPDYWISQQQQGADGFYD 60

Query: 63 DGEDDLSN---DIADFLPEAFDLDANEE-LRTMEAEFEE 95
          +GE++      D+AD LPE+FD D  E+   T  AEF++
Sbjct: 61 NGENENGGGHIDVADLLPESFDFDDMEDFFDTDAAEFDQ 99

[Close]
BLAST of CmoCh03G001840 vs. TAIR10
Match: AT4G14270.1 (AT4G14270.1 Protein containing PAM2 motif which mediates interaction with the PABC domain of polyadenyl binding proteins.)

HSP 1 Score: 70.9 bits (172), Expect = 5.6e-13
Identity = 44/98 (44.90%), Postives = 57/98 (58.16%), Query Frame = 1 

Query: 4   ASVDGR-SKLNPNAPLFIPAAY-QVEDFSPQWWQLVTTSTWYRNYWLSQHQEDGDFYMDG 63
           A++D R S LNPNAP+F P  + +VEDFSP+WW LVTTS W+R++WLS + E+ +F   G
Sbjct: 3   ATIDRRLSTLNPNAPVFDPVEFREVEDFSPKWWDLVTTSKWFRDFWLSANSEN-EFL--G 62

Query: 64  EDDLSNDIADFLPEAFDLDANEELRTMEAEFEEFIQAS 100
            DD S                     ME EFEE I +S
Sbjct: 63  GDDFS--------------------VMEEEFEEMIASS 77

[Close]
BLAST of CmoCh03G001840 vs. NCBI nr
Match: gi|525507437|ref|NP_001267508.1| (protein EARLY RESPONSIVE TO DEHYDRATION 15-like [Cucumis sativus])

HSP 1 Score: 201.1 bits (510), Expect = 1.0e-48
Identity = 98/110 (89.09%), Postives = 103/110 (93.64%), Query Frame = 1 

Query: 1   MALASVDGRSKLNPNAPLFIPAAYQVEDFSPQWWQLVTTSTWYRNYWLSQHQEDGDFYMD 60
           MALASV+G SKLNPNAPLFIPAAYQVEDFSPQWWQLVTTSTWYR+YWLSQHQE+ DFY+D
Sbjct: 1   MALASVEGSSKLNPNAPLFIPAAYQVEDFSPQWWQLVTTSTWYRDYWLSQHQEESDFYID 60

Query: 61  --GEDDLSNDIADFLPEAFDLDANEELRTMEAEFEEFIQASLTEGYHLEK 109
             GEDD SNDIA+FLPEAFDLDANEELRTMEAEFEEFIQASL EGYH EK
Sbjct: 61  GEGEDDFSNDIAEFLPEAFDLDANEELRTMEAEFEEFIQASLNEGYHPEK 110

[Close]
BLAST of CmoCh03G001840 vs. NCBI nr
Match: gi|703123054|ref|XP_010102715.1| (hypothetical protein L484_015513 [Morus notabilis])

HSP 1 Score: 140.2 bits (352), Expect = 2.1e-30
Identity = 69/104 (66.35%), Postives = 83/104 (79.81%), Query Frame = 1 

Query: 1   MALASVDGRSKLNPNAPLFIPAAY-QVEDFSPQWWQLVTTSTWYRNYWLSQHQEDGDFYM 60
           MAL S  GRS LNPNAPLFIPAA+ QVEDFSP+WWQL+TTS WY +YWLSQHQ++  FY 
Sbjct: 1   MALVS-GGRSTLNPNAPLFIPAAFRQVEDFSPEWWQLITTSPWYHDYWLSQHQDEDAFYS 60

Query: 61  DGEDDLSNDIADFLPEAFDLDANEELRTMEAEFEEFIQASLTEG 104
           + +DD+ N +AD LPE FDLDA +E   +EA+FEEFI+ S TEG
Sbjct: 61  NADDDIDN-VADLLPETFDLDAGDEFSNIEAQFEEFIEFSETEG 102

[Close]
BLAST of CmoCh03G001840 vs. NCBI nr
Match: gi|802725118|ref|XP_012085962.1| (PREDICTED: protein EARLY RESPONSIVE TO DEHYDRATION 15 [Jatropha curcas])

HSP 1 Score: 135.6 bits (340), Expect = 5.2e-29
Identity = 67/105 (63.81%), Postives = 84/105 (80.00%), Query Frame = 1 

Query: 1   MALASVDGRSKLNPNAPLFIPAAYQ-VEDFSPQWWQLVTTSTWYRNYWLSQHQEDGDFYM 60
           MAL S  GRS LNP+APLFIPAAYQ VEDFSP+WWQLVTTSTWYR+YWLSQHQ++  FY 
Sbjct: 1   MALVS-GGRSTLNPDAPLFIPAAYQQVEDFSPEWWQLVTTSTWYRDYWLSQHQDEEGFYD 60

Query: 61  DGEDDLSN--DIADFLPEAFDLDANEELRTMEAEFEEFIQASLTE 103
           + EDD  +  D+AD LP+ FDLDA E+  T+E +F+EF+++  T+
Sbjct: 61  NAEDDSYDACDVADLLPDTFDLDAGEDFSTLEVQFQEFVESYQTD 104

[Close]
BLAST of CmoCh03G001840 vs. NCBI nr
Match: gi|590635295|ref|XP_007028595.1| (Dehydration-induced protein, putative [Theobroma cacao])

HSP 1 Score: 134.8 bits (338), Expect = 8.9e-29
Identity = 69/101 (68.32%), Postives = 81/101 (80.20%), Query Frame = 1 

Query: 1   MALASVDGRSKLNPNAPLFIPAAY-QVEDFSPQWWQLVTTSTWYRNYWLSQHQEDGDFYM 60
           MAL +  GRS LNPNAPLFIPA Y QVEDFSP+WWQLVTTSTWYR+YWLSQHQ++  FY 
Sbjct: 1   MALVA-GGRSTLNPNAPLFIPAVYRQVEDFSPEWWQLVTTSTWYRDYWLSQHQDEDGFYD 60

Query: 61  DGEDD--LSNDIADFLPEAFDLDANEELRTMEAEFEEFIQA 99
           + EDD    NDIAD LP+ FDL A+E+L  M+ +FEEFIQ+
Sbjct: 61  NAEDDGFDGNDIADLLPDTFDLVADEDLSGMDLQFEEFIQS 100

[Close]
BLAST of CmoCh03G001840 vs. NCBI nr
Match: gi|657999865|ref|XP_008392368.1| (PREDICTED: protein EARLY RESPONSIVE TO DEHYDRATION 15-like isoform X4 [Malus domestica])

HSP 1 Score: 134.4 bits (337), Expect = 1.2e-28
Identity = 67/103 (65.05%), Postives = 81/103 (78.64%), Query Frame = 1 

Query: 3   LASVDGRSKLNPNAPLFIPAAY-QVEDFSPQWWQLVTTSTWYRNYWLSQHQEDGDFYMDG 62
           +A V G S+LNPNAPLFIPAA  QVEDFSP+WWQLVTTSTWY +YWLSQ  EDG FY D 
Sbjct: 1   MALVSGGSRLNPNAPLFIPAALRQVEDFSPEWWQLVTTSTWYHDYWLSQQGEDG-FYDDT 60

Query: 63  EDDLSNDIADFLPEAFDLDANEELRTMEAEFEEFIQASLTEGY 105
           ++++ N +AD LPE FDLD  +E   +EA+FEEF+Q S TEG+
Sbjct: 61  QNEVDN-VADLLPETFDLDVGDEFSGLEAQFEEFLQMSQTEGF 101

The following BLAST results are available for this feature:
BLAST of CmoCh03G001840 vs. Swiss-Prot
Match NameE-valueIdentityDescription
ERD15_ARATH2.4e-2158.59Protein EARLY RESPONSIVE TO DEHYDRATION 15 OS=Arabidopsis thaliana GN=ERD15 PE=1... [more]
CID2_ARATH9.9e-1244.90Polyadenylate-binding protein-interacting protein 2 OS=Arabidopsis thaliana GN=C... [more]
BLAST of CmoCh03G001840 vs. TrEMBL
Match NameE-valueIdentityDescription
Q6ELF8_CUCSA7.1e-4989.09Poly(A)-binding protein C-terminal interacting protein 243 OS=Cucumis sativus GN... [more]
W9S851_9ROSA1.5e-3066.35Uncharacterized protein OS=Morus notabilis GN=L484_015513 PE=4 SV=1[more]
A0A067K1V9_JATCU3.6e-2963.81Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22456 PE=4 SV=1[more]
A0A061EXG3_THECC6.2e-2968.32Dehydration-induced protein, putative OS=Theobroma cacao GN=TCM_024484 PE=4 SV=1[more]
B9SVS1_RICCO1.4e-2863.06Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0255020 PE=4 SV=1[more]
BLAST of CmoCh03G001840 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G41430.11.3e-2258.59 dehydration-induced protein (ERD15)[more]
AT4G14270.15.6e-1344.90 Protein containing PAM2 motif which mediates interaction with the PA... [more]
BLAST of CmoCh03G001840 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|525507437|ref|NP_001267508.1|1.0e-4889.09protein EARLY RESPONSIVE TO DEHYDRATION 15-like [Cucumis sativus][more]
gi|703123054|ref|XP_010102715.1|2.1e-3066.35hypothetical protein L484_015513 [Morus notabilis][more]
gi|802725118|ref|XP_012085962.1|5.2e-2963.81PREDICTED: protein EARLY RESPONSIVE TO DEHYDRATION 15 [Jatropha curcas][more]
gi|590635295|ref|XP_007028595.1|8.9e-2968.32Dehydration-induced protein, putative [Theobroma cacao][more]
gi|657999865|ref|XP_008392368.1|1.2e-2865.05PREDICTED: protein EARLY RESPONSIVE TO DEHYDRATION 15-like isoform X4 [Malus dom... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR009818Ataxin-2_C
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh03G001840.1CmoCh03G001840.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR009818Ataxin-2, C-terminalPFAMPF07145PAM2coord: 9..21
score: 1.
NoneNo IPR availablePANTHERPTHR33790FAMILY NOT NAMEDcoord: 2..102
score: 2.3
NoneNo IPR availablePANTHERPTHR33790:SF1PROTEIN EARLY RESPONSIVE TO DEHYDRATION 15coord: 2..102
score: 2.3

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh03G001840CmaCh03G002020Cucurbita maxima (Rimu)cmacmoB655
CmoCh03G001840CmaCh07G013490Cucurbita maxima (Rimu)cmacmoB865
CmoCh03G001840Lsi01G018060Bottle gourd (USVL1VR-Ls)cmolsiB584
CmoCh03G001840Cp4.1LG19g00310Cucurbita pepo (Zucchini)cmocpeB622
CmoCh03G001840Cp4.1LG01g17330Cucurbita pepo (Zucchini)cmocpeB617
CmoCh03G001840Carg27660Silver-seed gourdcarcmoB0310
CmoCh03G001840Carg21113Silver-seed gourdcarcmoB0644
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CmoCh03G001840CmoCh07G013890Cucurbita moschata (Rifu)cmocmoB463
The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh03G001840Melon (DHL92) v3.6.1cmomedB680
CmoCh03G001840Melon (DHL92) v3.6.1cmomedB697
CmoCh03G001840Watermelon (97103) v2cmowmbB647
CmoCh03G001840Watermelon (97103) v2cmowmbB666
CmoCh03G001840Wax gourdcmowgoB0795
CmoCh03G001840Cucumber (Gy14) v1cgycmoB0937
CmoCh03G001840Melon (DHL92) v3.5.1cmomeB608
CmoCh03G001840Watermelon (Charleston Gray)cmowcgB593
CmoCh03G001840Watermelon (97103) v1cmowmB630
CmoCh03G001840Cucurbita pepo (Zucchini)cmocpeB606
CmoCh03G001840Bottle gourd (USVL1VR-Ls)cmolsiB600