CmaCh03G002020 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh03G002020
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionDehydration-induced protein ERD15
LocationCma_Chr03 : 3113716 .. 3114042 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTCTAGCATCTGTTGATGGAAGATCAAAGCTAAACCCGAACGCCCCACTTTTCATCCCGGCTGCATACCAGGTGGAGGATTTCTCCCCACAATGGTGGCAATTGGTCACAACCTCGACATGGTACCGCGATTACTGGCTCAGCCAACACCAGGAAGAGAGTGACTTCTACATGGACGGCGAAGATGATTTCAGTACCGACATTGCTGATTTTTTGCCAGAGGCATTTGATCTCGATGCGAGCGAAGAACTCCGCACCATGGAAGCTGAATTTGAGGAGTTCATTCAAGCTTCCCTTACTGAAGGGTACCACCTTGAGAAGTAG

mRNA sequence

ATGGCTCTAGCATCTGTTGATGGAAGATCAAAGCTAAACCCGAACGCCCCACTTTTCATCCCGGCTGCATACCAGGTGGAGGATTTCTCCCCACAATGGTGGCAATTGGTCACAACCTCGACATGGTACCGCGATTACTGGCTCAGCCAACACCAGGAAGAGAGTGACTTCTACATGGACGGCGAAGATGATTTCAGTACCGACATTGCTGATTTTTTGCCAGAGGCATTTGATCTCGATGCGAGCGAAGAACTCCGCACCATGGAAGCTGAATTTGAGGAGTTCATTCAAGCTTCCCTTACTGAAGGGTACCACCTTGAGAAGTAG

Coding sequence (CDS)

ATGGCTCTAGCATCTGTTGATGGAAGATCAAAGCTAAACCCGAACGCCCCACTTTTCATCCCGGCTGCATACCAGGTGGAGGATTTCTCCCCACAATGGTGGCAATTGGTCACAACCTCGACATGGTACCGCGATTACTGGCTCAGCCAACACCAGGAAGAGAGTGACTTCTACATGGACGGCGAAGATGATTTCAGTACCGACATTGCTGATTTTTTGCCAGAGGCATTTGATCTCGATGCGAGCGAAGAACTCCGCACCATGGAAGCTGAATTTGAGGAGTTCATTCAAGCTTCCCTTACTGAAGGGTACCACCTTGAGAAGTAG

Protein sequence

MALASVDGRSKLNPNAPLFIPAAYQVEDFSPQWWQLVTTSTWYRDYWLSQHQEESDFYMDGEDDFSTDIADFLPEAFDLDASEELRTMEAEFEEFIQASLTEGYHLEK
Homology
[Close]
BLAST of CmaCh03G002020 vs. Swiss-Prot
Match: ERD15_ARATH (Protein EARLY RESPONSIVE TO DEHYDRATION 15 OS=Arabidopsis thaliana GN=ERD15 PE=1 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 1.4e-21
Identity = 59/99 (59.60%), Postives = 73/99 (73.74%), Query Frame = 1 

Query: 3  LASVDGR-SKLNPNAPLFIPAAY-QVEDFSPQWWQLVTTSTWYRDYWLSQHQEESD-FYM 62
          +A V GR S LNP+APLFIPAA  QVEDFSP+WWQLVTTSTWY DYW+SQ Q+ +D FY 
Sbjct: 1  MAMVSGRRSTLNPDAPLFIPAAVRQVEDFSPEWWQLVTTSTWYPDYWISQQQQGADGFYD 60

Query: 63 DGEDDFS---TDIADFLPEAFDLDASEE-LRTMEAEFEE 95
          +GE++      D+AD LPE+FD D  E+   T  AEF++
Sbjct: 61 NGENENGGGHIDVADLLPESFDFDDMEDFFDTDAAEFDQ 99

[Close]
BLAST of CmaCh03G002020 vs. Swiss-Prot
Match: CID2_ARATH (Polyadenylate-binding protein-interacting protein 2 OS=Arabidopsis thaliana GN=CID2 PE=2 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 1.2e-12
Identity = 46/98 (46.94%), Postives = 58/98 (59.18%), Query Frame = 1 

Query: 4   ASVDGR-SKLNPNAPLFIPAAY-QVEDFSPQWWQLVTTSTWYRDYWLSQHQEESDFYMDG 63
           A++D R S LNPNAP+F P  + +VEDFSP+WW LVTTS W+RD+WLS +  E++F   G
Sbjct: 3   ATIDRRLSTLNPNAPVFDPVEFREVEDFSPKWWDLVTTSKWFRDFWLSAN-SENEFL--G 62

Query: 64  EDDFSTDIADFLPEAFDLDASEELRTMEAEFEEFIQAS 100
            DDFS                     ME EFEE I +S
Sbjct: 63  GDDFS--------------------VMEEEFEEMIASS 77

[Close]
BLAST of CmaCh03G002020 vs. TrEMBL
Match: Q6ELF8_CUCSA (Poly(A)-binding protein C-terminal interacting protein 243 OS=Cucumis sativus GN=Csa_4G214830 PE=2 SV=1)

HSP 1 Score: 202.6 bits (514), Expect = 2.4e-49
Identity = 100/110 (90.91%), Postives = 104/110 (94.55%), Query Frame = 1 

Query: 1   MALASVDGRSKLNPNAPLFIPAAYQVEDFSPQWWQLVTTSTWYRDYWLSQHQEESDFYMD 60
           MALASV+G SKLNPNAPLFIPAAYQVEDFSPQWWQLVTTSTWYRDYWLSQHQEESDFY+D
Sbjct: 1   MALASVEGSSKLNPNAPLFIPAAYQVEDFSPQWWQLVTTSTWYRDYWLSQHQEESDFYID 60

Query: 61  --GEDDFSTDIADFLPEAFDLDASEELRTMEAEFEEFIQASLTEGYHLEK 109
             GEDDFS DIA+FLPEAFDLDA+EELRTMEAEFEEFIQASL EGYH EK
Sbjct: 61  GEGEDDFSNDIAEFLPEAFDLDANEELRTMEAEFEEFIQASLNEGYHPEK 110

[Close]
BLAST of CmaCh03G002020 vs. TrEMBL
Match: W9S851_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_015513 PE=4 SV=1)

HSP 1 Score: 139.0 bits (349), Expect = 3.3e-30
Identity = 70/104 (67.31%), Postives = 82/104 (78.85%), Query Frame = 1 

Query: 1   MALASVDGRSKLNPNAPLFIPAAY-QVEDFSPQWWQLVTTSTWYRDYWLSQHQEESDFYM 60
           MAL S  GRS LNPNAPLFIPAA+ QVEDFSP+WWQL+TTS WY DYWLSQHQ+E  FY 
Sbjct: 1   MALVS-GGRSTLNPNAPLFIPAAFRQVEDFSPEWWQLITTSPWYHDYWLSQHQDEDAFYS 60

Query: 61  DGEDDFSTDIADFLPEAFDLDASEELRTMEAEFEEFIQASLTEG 104
           + +DD   ++AD LPE FDLDA +E   +EA+FEEFI+ S TEG
Sbjct: 61  NADDDID-NVADLLPETFDLDAGDEFSNIEAQFEEFIEFSETEG 102

[Close]
BLAST of CmaCh03G002020 vs. TrEMBL
Match: A0A067K1V9_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22456 PE=4 SV=1)

HSP 1 Score: 138.7 bits (348), Expect = 4.3e-30
Identity = 69/105 (65.71%), Postives = 84/105 (80.00%), Query Frame = 1 

Query: 1   MALASVDGRSKLNPNAPLFIPAAYQ-VEDFSPQWWQLVTTSTWYRDYWLSQHQEESDFYM 60
           MAL S  GRS LNP+APLFIPAAYQ VEDFSP+WWQLVTTSTWYRDYWLSQHQ+E  FY 
Sbjct: 1   MALVS-GGRSTLNPDAPLFIPAAYQQVEDFSPEWWQLVTTSTWYRDYWLSQHQDEEGFYD 60

Query: 61  DGEDDF--STDIADFLPEAFDLDASEELRTMEAEFEEFIQASLTE 103
           + EDD   + D+AD LP+ FDLDA E+  T+E +F+EF+++  T+
Sbjct: 61  NAEDDSYDACDVADLLPDTFDLDAGEDFSTLEVQFQEFVESYQTD 104

[Close]
BLAST of CmaCh03G002020 vs. TrEMBL
Match: A0A061EXG3_THECC (Dehydration-induced protein, putative OS=Theobroma cacao GN=TCM_024484 PE=4 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 8.1e-29
Identity = 70/101 (69.31%), Postives = 79/101 (78.22%), Query Frame = 1 

Query: 1   MALASVDGRSKLNPNAPLFIPAAY-QVEDFSPQWWQLVTTSTWYRDYWLSQHQEESDFYM 60
           MAL +  GRS LNPNAPLFIPA Y QVEDFSP+WWQLVTTSTWYRDYWLSQHQ+E  FY 
Sbjct: 1   MALVA-GGRSTLNPNAPLFIPAVYRQVEDFSPEWWQLVTTSTWYRDYWLSQHQDEDGFYD 60

Query: 61  DGEDD--FSTDIADFLPEAFDLDASEELRTMEAEFEEFIQA 99
           + EDD     DIAD LP+ FDL A E+L  M+ +FEEFIQ+
Sbjct: 61  NAEDDGFDGNDIADLLPDTFDLVADEDLSGMDLQFEEFIQS 100

[Close]
BLAST of CmaCh03G002020 vs. TrEMBL
Match: B9SVS1_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0255020 PE=4 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 1.4e-28
Identity = 71/111 (63.96%), Postives = 81/111 (72.97%), Query Frame = 1 

Query: 1   MALASVDGRSKLNPNAPLFIPAAY-QVEDFSPQWWQLVTTSTWYRDYWLSQHQEESDFYM 60
           MAL S  GRS LNP+APLFIPAAY QVEDFSP+WWQLVT STWYRDYWLSQHQ+E  FY 
Sbjct: 1   MALVS-GGRSTLNPDAPLFIPAAYRQVEDFSPEWWQLVTNSTWYRDYWLSQHQDEDGFYD 60

Query: 61  DGEDD---FSTDIADFLPEAFDLDASEELRTMEAEFEEFIQASLTEGYHLE 108
           + EDD      D+ D LPE FDLDA E   ++EA+F EF+ +  TE   LE
Sbjct: 61  NAEDDEGFDGNDVVDLLPETFDLDAGEYFSSLEAQFHEFVDSYETEVDGLE 110

[Close]
BLAST of CmaCh03G002020 vs. TAIR10
Match: AT2G41430.1 (AT2G41430.1 dehydration-induced protein (ERD15))

HSP 1 Score: 103.6 bits (257), Expect = 7.8e-23
Identity = 59/99 (59.60%), Postives = 73/99 (73.74%), Query Frame = 1 

Query: 3  LASVDGR-SKLNPNAPLFIPAAY-QVEDFSPQWWQLVTTSTWYRDYWLSQHQEESD-FYM 62
          +A V GR S LNP+APLFIPAA  QVEDFSP+WWQLVTTSTWY DYW+SQ Q+ +D FY 
Sbjct: 1  MAMVSGRRSTLNPDAPLFIPAAVRQVEDFSPEWWQLVTTSTWYPDYWISQQQQGADGFYD 60

Query: 63 DGEDDFS---TDIADFLPEAFDLDASEE-LRTMEAEFEE 95
          +GE++      D+AD LPE+FD D  E+   T  AEF++
Sbjct: 61 NGENENGGGHIDVADLLPESFDFDDMEDFFDTDAAEFDQ 99

[Close]
BLAST of CmaCh03G002020 vs. TAIR10
Match: AT4G14270.1 (AT4G14270.1 Protein containing PAM2 motif which mediates interaction with the PABC domain of polyadenyl binding proteins.)

HSP 1 Score: 73.9 bits (180), Expect = 6.6e-14
Identity = 46/98 (46.94%), Postives = 58/98 (59.18%), Query Frame = 1 

Query: 4   ASVDGR-SKLNPNAPLFIPAAY-QVEDFSPQWWQLVTTSTWYRDYWLSQHQEESDFYMDG 63
           A++D R S LNPNAP+F P  + +VEDFSP+WW LVTTS W+RD+WLS +  E++F   G
Sbjct: 3   ATIDRRLSTLNPNAPVFDPVEFREVEDFSPKWWDLVTTSKWFRDFWLSAN-SENEFL--G 62

Query: 64  EDDFSTDIADFLPEAFDLDASEELRTMEAEFEEFIQAS 100
            DDFS                     ME EFEE I +S
Sbjct: 63  GDDFS--------------------VMEEEFEEMIASS 77

[Close]
BLAST of CmaCh03G002020 vs. NCBI nr
Match: gi|525507437|ref|NP_001267508.1| (protein EARLY RESPONSIVE TO DEHYDRATION 15-like [Cucumis sativus])

HSP 1 Score: 202.6 bits (514), Expect = 3.5e-49
Identity = 100/110 (90.91%), Postives = 104/110 (94.55%), Query Frame = 1 

Query: 1   MALASVDGRSKLNPNAPLFIPAAYQVEDFSPQWWQLVTTSTWYRDYWLSQHQEESDFYMD 60
           MALASV+G SKLNPNAPLFIPAAYQVEDFSPQWWQLVTTSTWYRDYWLSQHQEESDFY+D
Sbjct: 1   MALASVEGSSKLNPNAPLFIPAAYQVEDFSPQWWQLVTTSTWYRDYWLSQHQEESDFYID 60

Query: 61  --GEDDFSTDIADFLPEAFDLDASEELRTMEAEFEEFIQASLTEGYHLEK 109
             GEDDFS DIA+FLPEAFDLDA+EELRTMEAEFEEFIQASL EGYH EK
Sbjct: 61  GEGEDDFSNDIAEFLPEAFDLDANEELRTMEAEFEEFIQASLNEGYHPEK 110

[Close]
BLAST of CmaCh03G002020 vs. NCBI nr
Match: gi|703123054|ref|XP_010102715.1| (hypothetical protein L484_015513 [Morus notabilis])

HSP 1 Score: 139.0 bits (349), Expect = 4.7e-30
Identity = 70/104 (67.31%), Postives = 82/104 (78.85%), Query Frame = 1 

Query: 1   MALASVDGRSKLNPNAPLFIPAAY-QVEDFSPQWWQLVTTSTWYRDYWLSQHQEESDFYM 60
           MAL S  GRS LNPNAPLFIPAA+ QVEDFSP+WWQL+TTS WY DYWLSQHQ+E  FY 
Sbjct: 1   MALVS-GGRSTLNPNAPLFIPAAFRQVEDFSPEWWQLITTSPWYHDYWLSQHQDEDAFYS 60

Query: 61  DGEDDFSTDIADFLPEAFDLDASEELRTMEAEFEEFIQASLTEG 104
           + +DD   ++AD LPE FDLDA +E   +EA+FEEFI+ S TEG
Sbjct: 61  NADDDID-NVADLLPETFDLDAGDEFSNIEAQFEEFIEFSETEG 102

[Close]
BLAST of CmaCh03G002020 vs. NCBI nr
Match: gi|802725118|ref|XP_012085962.1| (PREDICTED: protein EARLY RESPONSIVE TO DEHYDRATION 15 [Jatropha curcas])

HSP 1 Score: 138.7 bits (348), Expect = 6.2e-30
Identity = 69/105 (65.71%), Postives = 84/105 (80.00%), Query Frame = 1 

Query: 1   MALASVDGRSKLNPNAPLFIPAAYQ-VEDFSPQWWQLVTTSTWYRDYWLSQHQEESDFYM 60
           MAL S  GRS LNP+APLFIPAAYQ VEDFSP+WWQLVTTSTWYRDYWLSQHQ+E  FY 
Sbjct: 1   MALVS-GGRSTLNPDAPLFIPAAYQQVEDFSPEWWQLVTTSTWYRDYWLSQHQDEEGFYD 60

Query: 61  DGEDDF--STDIADFLPEAFDLDASEELRTMEAEFEEFIQASLTE 103
           + EDD   + D+AD LP+ FDLDA E+  T+E +F+EF+++  T+
Sbjct: 61  NAEDDSYDACDVADLLPDTFDLDAGEDFSTLEVQFQEFVESYQTD 104

[Close]
BLAST of CmaCh03G002020 vs. NCBI nr
Match: gi|590635295|ref|XP_007028595.1| (Dehydration-induced protein, putative [Theobroma cacao])

HSP 1 Score: 134.4 bits (337), Expect = 1.2e-28
Identity = 70/101 (69.31%), Postives = 79/101 (78.22%), Query Frame = 1 

Query: 1   MALASVDGRSKLNPNAPLFIPAAY-QVEDFSPQWWQLVTTSTWYRDYWLSQHQEESDFYM 60
           MAL +  GRS LNPNAPLFIPA Y QVEDFSP+WWQLVTTSTWYRDYWLSQHQ+E  FY 
Sbjct: 1   MALVA-GGRSTLNPNAPLFIPAVYRQVEDFSPEWWQLVTTSTWYRDYWLSQHQDEDGFYD 60

Query: 61  DGEDD--FSTDIADFLPEAFDLDASEELRTMEAEFEEFIQA 99
           + EDD     DIAD LP+ FDL A E+L  M+ +FEEFIQ+
Sbjct: 61  NAEDDGFDGNDIADLLPDTFDLVADEDLSGMDLQFEEFIQS 100

[Close]
BLAST of CmaCh03G002020 vs. NCBI nr
Match: gi|255578451|ref|XP_002530090.1| (PREDICTED: protein EARLY RESPONSIVE TO DEHYDRATION 15 [Ricinus communis])

HSP 1 Score: 133.7 bits (335), Expect = 2.0e-28
Identity = 71/111 (63.96%), Postives = 81/111 (72.97%), Query Frame = 1 

Query: 1   MALASVDGRSKLNPNAPLFIPAAY-QVEDFSPQWWQLVTTSTWYRDYWLSQHQEESDFYM 60
           MAL S  GRS LNP+APLFIPAAY QVEDFSP+WWQLVT STWYRDYWLSQHQ+E  FY 
Sbjct: 1   MALVS-GGRSTLNPDAPLFIPAAYRQVEDFSPEWWQLVTNSTWYRDYWLSQHQDEDGFYD 60

Query: 61  DGEDD---FSTDIADFLPEAFDLDASEELRTMEAEFEEFIQASLTEGYHLE 108
           + EDD      D+ D LPE FDLDA E   ++EA+F EF+ +  TE   LE
Sbjct: 61  NAEDDEGFDGNDVVDLLPETFDLDAGEYFSSLEAQFHEFVDSYETEVDGLE 110

The following BLAST results are available for this feature:
BLAST of CmaCh03G002020 vs. Swiss-Prot
Match NameE-valueIdentityDescription
ERD15_ARATH1.4e-2159.60Protein EARLY RESPONSIVE TO DEHYDRATION 15 OS=Arabidopsis thaliana GN=ERD15 PE=1... [more]
CID2_ARATH1.2e-1246.94Polyadenylate-binding protein-interacting protein 2 OS=Arabidopsis thaliana GN=C... [more]
BLAST of CmaCh03G002020 vs. TrEMBL
Match NameE-valueIdentityDescription
Q6ELF8_CUCSA2.4e-4990.91Poly(A)-binding protein C-terminal interacting protein 243 OS=Cucumis sativus GN... [more]
W9S851_9ROSA3.3e-3067.31Uncharacterized protein OS=Morus notabilis GN=L484_015513 PE=4 SV=1[more]
A0A067K1V9_JATCU4.3e-3065.71Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22456 PE=4 SV=1[more]
A0A061EXG3_THECC8.1e-2969.31Dehydration-induced protein, putative OS=Theobroma cacao GN=TCM_024484 PE=4 SV=1[more]
B9SVS1_RICCO1.4e-2863.96Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0255020 PE=4 SV=1[more]
BLAST of CmaCh03G002020 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G41430.17.8e-2359.60 dehydration-induced protein (ERD15)[more]
AT4G14270.16.6e-1446.94 Protein containing PAM2 motif which mediates interaction with the PA... [more]
BLAST of CmaCh03G002020 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|525507437|ref|NP_001267508.1|3.5e-4990.91protein EARLY RESPONSIVE TO DEHYDRATION 15-like [Cucumis sativus][more]
gi|703123054|ref|XP_010102715.1|4.7e-3067.31hypothetical protein L484_015513 [Morus notabilis][more]
gi|802725118|ref|XP_012085962.1|6.2e-3065.71PREDICTED: protein EARLY RESPONSIVE TO DEHYDRATION 15 [Jatropha curcas][more]
gi|590635295|ref|XP_007028595.1|1.2e-2869.31Dehydration-induced protein, putative [Theobroma cacao][more]
gi|255578451|ref|XP_002530090.1|2.0e-2863.96PREDICTED: protein EARLY RESPONSIVE TO DEHYDRATION 15 [Ricinus communis][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR009818Ataxin-2_C
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh03G002020.1CmaCh03G002020.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR009818Ataxin-2, C-terminalPFAMPF07145PAM2coord: 9..21
score: 1.
NoneNo IPR availablePANTHERPTHR33790FAMILY NOT NAMEDcoord: 2..102
score: 3.0
NoneNo IPR availablePANTHERPTHR33790:SF1PROTEIN EARLY RESPONSIVE TO DEHYDRATION 15coord: 2..102
score: 3.0

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmaCh03G002020CmoCh03G001840Cucurbita moschata (Rifu)cmacmoB655
CmaCh03G002020Cp4.1LG01g17330Cucurbita pepo (Zucchini)cmacpeB666
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh03G002020Watermelon (Charleston Gray)cmawcgB593
CmaCh03G002020Watermelon (97103) v1cmawmB642
CmaCh03G002020Cucurbita pepo (Zucchini)cmacpeB656
CmaCh03G002020Cucurbita pepo (Zucchini)cmacpeB672
CmaCh03G002020Bottle gourd (USVL1VR-Ls)cmalsiB601
CmaCh03G002020Silver-seed gourdcarcmaB0812
CmaCh03G002020Silver-seed gourdcarcmaB1427
CmaCh03G002020Watermelon (97103) v2cmawmbB692
CmaCh03G002020Wax gourdcmawgoB0793
CmaCh03G002020Cucurbita maxima (Rimu)cmacmaB524
CmaCh03G002020Cucurbita moschata (Rifu)cmacmoB653
CmaCh03G002020Cucurbita moschata (Rifu)cmacmoB668