Cp4.1LG01g17330 (gene) Cucurbita pepo (Zucchini)

NameCp4.1LG01g17330
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionEARLY responsive TO dehydration protein, putative
LocationCp4.1LG01 : 12142597 .. 12142923 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTCTAGCATCTGTTGATGGAAGATCAAAGCTAAACCCGAACGCCCCACTTTTCATCCCGGCTGCATACCAGGTGGAGGATTTCTCCCCGCAATGGTGGCAATTGGTCACAACCTCGACATGGTACCGCGATTACTGGCTCAGCCAACACCAGGAAGACAGTGACTTCTACATGGACGGCGAAGATGATTTCAGCAACGACATTGCTGATTTTTTGCCAGAGGCATTCGATCTCGACGCAAACGAAGAACTGCGCACCATGGAAGCTGAATTTGAGGAGTTCATTCAAGCTTCCCTTACTGAAGGGTACCACCTCGAGGAGTAG

mRNA sequence

ATGGCTCTAGCATCTGTTGATGGAAGATCAAAGCTAAACCCGAACGCCCCACTTTTCATCCCGGCTGCATACCAGGTGGAGGATTTCTCCCCGCAATGGTGGCAATTGGTCACAACCTCGACATGGTACCGCGATTACTGGCTCAGCCAACACCAGGAAGACAGTGACTTCTACATGGACGGCGAAGATGATTTCAGCAACGACATTGCTGATTTTTTGCCAGAGGCATTCGATCTCGACGCAAACGAAGAACTGCGCACCATGGAAGCTGAATTTGAGGAGTTCATTCAAGCTTCCCTTACTGAAGGGTACCACCTCGAGGAGTAG

Coding sequence (CDS)

ATGGCTCTAGCATCTGTTGATGGAAGATCAAAGCTAAACCCGAACGCCCCACTTTTCATCCCGGCTGCATACCAGGTGGAGGATTTCTCCCCGCAATGGTGGCAATTGGTCACAACCTCGACATGGTACCGCGATTACTGGCTCAGCCAACACCAGGAAGACAGTGACTTCTACATGGACGGCGAAGATGATTTCAGCAACGACATTGCTGATTTTTTGCCAGAGGCATTCGATCTCGACGCAAACGAAGAACTGCGCACCATGGAAGCTGAATTTGAGGAGTTCATTCAAGCTTCCCTTACTGAAGGGTACCACCTCGAGGAGTAG

Protein sequence

MALASVDGRSKLNPNAPLFIPAAYQVEDFSPQWWQLVTTSTWYRDYWLSQHQEDSDFYMDGEDDFSNDIADFLPEAFDLDANEELRTMEAEFEEFIQASLTEGYHLEE
BLAST of Cp4.1LG01g17330 vs. Swiss-Prot
Match: ERD15_ARATH (Protein EARLY RESPONSIVE TO DEHYDRATION 15 OS=Arabidopsis thaliana GN=ERD15 PE=1 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 1.4e-21
Identity = 59/99 (59.60%), Postives = 73/99 (73.74%), Query Frame = 1

Query: 3  LASVDGR-SKLNPNAPLFIPAAY-QVEDFSPQWWQLVTTSTWYRDYWLSQHQEDSD-FYM 62
          +A V GR S LNP+APLFIPAA  QVEDFSP+WWQLVTTSTWY DYW+SQ Q+ +D FY 
Sbjct: 1  MAMVSGRRSTLNPDAPLFIPAAVRQVEDFSPEWWQLVTTSTWYPDYWISQQQQGADGFYD 60

Query: 63 DGEDDFSN---DIADFLPEAFDLDANEE-LRTMEAEFEE 95
          +GE++      D+AD LPE+FD D  E+   T  AEF++
Sbjct: 61 NGENENGGGHIDVADLLPESFDFDDMEDFFDTDAAEFDQ 99

BLAST of Cp4.1LG01g17330 vs. Swiss-Prot
Match: CID2_ARATH (Polyadenylate-binding protein-interacting protein 2 OS=Arabidopsis thaliana GN=CID2 PE=2 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 9.0e-13
Identity = 45/98 (45.92%), Postives = 56/98 (57.14%), Query Frame = 1

Query: 4   ASVDGR-SKLNPNAPLFIPAAY-QVEDFSPQWWQLVTTSTWYRDYWLSQHQEDSDFYMDG 63
           A++D R S LNPNAP+F P  + +VEDFSP+WW LVTTS W+RD+WLS + E+      G
Sbjct: 3   ATIDRRLSTLNPNAPVFDPVEFREVEDFSPKWWDLVTTSKWFRDFWLSANSENEFL---G 62

Query: 64  EDDFSNDIADFLPEAFDLDANEELRTMEAEFEEFIQAS 100
            DDFS                     ME EFEE I +S
Sbjct: 63  GDDFS--------------------VMEEEFEEMIASS 77

BLAST of Cp4.1LG01g17330 vs. TrEMBL
Match: Q6ELF8_CUCSA (Poly(A)-binding protein C-terminal interacting protein 243 OS=Cucumis sativus GN=Csa_4G214830 PE=2 SV=1)

HSP 1 Score: 203.0 bits (515), Expect = 1.9e-49
Identity = 100/110 (90.91%), Postives = 105/110 (95.45%), Query Frame = 1

Query: 1   MALASVDGRSKLNPNAPLFIPAAYQVEDFSPQWWQLVTTSTWYRDYWLSQHQEDSDFYMD 60
           MALASV+G SKLNPNAPLFIPAAYQVEDFSPQWWQLVTTSTWYRDYWLSQHQE+SDFY+D
Sbjct: 1   MALASVEGSSKLNPNAPLFIPAAYQVEDFSPQWWQLVTTSTWYRDYWLSQHQEESDFYID 60

Query: 61  --GEDDFSNDIADFLPEAFDLDANEELRTMEAEFEEFIQASLTEGYHLEE 109
             GEDDFSNDIA+FLPEAFDLDANEELRTMEAEFEEFIQASL EGYH E+
Sbjct: 61  GEGEDDFSNDIAEFLPEAFDLDANEELRTMEAEFEEFIQASLNEGYHPEK 110

BLAST of Cp4.1LG01g17330 vs. TrEMBL
Match: W9S851_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_015513 PE=4 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 1.5e-30
Identity = 70/104 (67.31%), Postives = 82/104 (78.85%), Query Frame = 1

Query: 1   MALASVDGRSKLNPNAPLFIPAAY-QVEDFSPQWWQLVTTSTWYRDYWLSQHQEDSDFYM 60
           MAL S  GRS LNPNAPLFIPAA+ QVEDFSP+WWQL+TTS WY DYWLSQHQ++  FY 
Sbjct: 1   MALVS-GGRSTLNPNAPLFIPAAFRQVEDFSPEWWQLITTSPWYHDYWLSQHQDEDAFYS 60

Query: 61  DGEDDFSNDIADFLPEAFDLDANEELRTMEAEFEEFIQASLTEG 104
           + +DD  N +AD LPE FDLDA +E   +EA+FEEFI+ S TEG
Sbjct: 61  NADDDIDN-VADLLPETFDLDAGDEFSNIEAQFEEFIEFSETEG 102

BLAST of Cp4.1LG01g17330 vs. TrEMBL
Match: A0A067K1V9_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22456 PE=4 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 1.6e-29
Identity = 68/105 (64.76%), Postives = 84/105 (80.00%), Query Frame = 1

Query: 1   MALASVDGRSKLNPNAPLFIPAAYQ-VEDFSPQWWQLVTTSTWYRDYWLSQHQEDSDFYM 60
           MAL S  GRS LNP+APLFIPAAYQ VEDFSP+WWQLVTTSTWYRDYWLSQHQ++  FY 
Sbjct: 1   MALVS-GGRSTLNPDAPLFIPAAYQQVEDFSPEWWQLVTTSTWYRDYWLSQHQDEEGFYD 60

Query: 61  DGEDDFSN--DIADFLPEAFDLDANEELRTMEAEFEEFIQASLTE 103
           + EDD  +  D+AD LP+ FDLDA E+  T+E +F+EF+++  T+
Sbjct: 61  NAEDDSYDACDVADLLPDTFDLDAGEDFSTLEVQFQEFVESYQTD 104

BLAST of Cp4.1LG01g17330 vs. TrEMBL
Match: A0A061EXG3_THECC (Dehydration-induced protein, putative OS=Theobroma cacao GN=TCM_024484 PE=4 SV=1)

HSP 1 Score: 135.6 bits (340), Expect = 3.6e-29
Identity = 70/101 (69.31%), Postives = 81/101 (80.20%), Query Frame = 1

Query: 1   MALASVDGRSKLNPNAPLFIPAAY-QVEDFSPQWWQLVTTSTWYRDYWLSQHQEDSDFYM 60
           MAL +  GRS LNPNAPLFIPA Y QVEDFSP+WWQLVTTSTWYRDYWLSQHQ++  FY 
Sbjct: 1   MALVA-GGRSTLNPNAPLFIPAVYRQVEDFSPEWWQLVTTSTWYRDYWLSQHQDEDGFYD 60

Query: 61  DGEDD--FSNDIADFLPEAFDLDANEELRTMEAEFEEFIQA 99
           + EDD    NDIAD LP+ FDL A+E+L  M+ +FEEFIQ+
Sbjct: 61  NAEDDGFDGNDIADLLPDTFDLVADEDLSGMDLQFEEFIQS 100

BLAST of Cp4.1LG01g17330 vs. TrEMBL
Match: B9SVS1_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0255020 PE=4 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 8.1e-29
Identity = 71/111 (63.96%), Postives = 82/111 (73.87%), Query Frame = 1

Query: 1   MALASVDGRSKLNPNAPLFIPAAY-QVEDFSPQWWQLVTTSTWYRDYWLSQHQEDSDFYM 60
           MAL S  GRS LNP+APLFIPAAY QVEDFSP+WWQLVT STWYRDYWLSQHQ++  FY 
Sbjct: 1   MALVS-GGRSTLNPDAPLFIPAAYRQVEDFSPEWWQLVTNSTWYRDYWLSQHQDEDGFYD 60

Query: 61  DGEDD---FSNDIADFLPEAFDLDANEELRTMEAEFEEFIQASLTEGYHLE 108
           + EDD     ND+ D LPE FDLDA E   ++EA+F EF+ +  TE   LE
Sbjct: 61  NAEDDEGFDGNDVVDLLPETFDLDAGEYFSSLEAQFHEFVDSYETEVDGLE 110

BLAST of Cp4.1LG01g17330 vs. TAIR10
Match: AT2G41430.1 (AT2G41430.1 dehydration-induced protein (ERD15))

HSP 1 Score: 103.6 bits (257), Expect = 7.8e-23
Identity = 59/99 (59.60%), Postives = 73/99 (73.74%), Query Frame = 1

Query: 3  LASVDGR-SKLNPNAPLFIPAAY-QVEDFSPQWWQLVTTSTWYRDYWLSQHQEDSD-FYM 62
          +A V GR S LNP+APLFIPAA  QVEDFSP+WWQLVTTSTWY DYW+SQ Q+ +D FY 
Sbjct: 1  MAMVSGRRSTLNPDAPLFIPAAVRQVEDFSPEWWQLVTTSTWYPDYWISQQQQGADGFYD 60

Query: 63 DGEDDFSN---DIADFLPEAFDLDANEE-LRTMEAEFEE 95
          +GE++      D+AD LPE+FD D  E+   T  AEF++
Sbjct: 61 NGENENGGGHIDVADLLPESFDFDDMEDFFDTDAAEFDQ 99

BLAST of Cp4.1LG01g17330 vs. TAIR10
Match: AT4G14270.1 (AT4G14270.1 Protein containing PAM2 motif which mediates interaction with the PABC domain of polyadenyl binding proteins.)

HSP 1 Score: 74.3 bits (181), Expect = 5.1e-14
Identity = 45/98 (45.92%), Postives = 56/98 (57.14%), Query Frame = 1

Query: 4   ASVDGR-SKLNPNAPLFIPAAY-QVEDFSPQWWQLVTTSTWYRDYWLSQHQEDSDFYMDG 63
           A++D R S LNPNAP+F P  + +VEDFSP+WW LVTTS W+RD+WLS + E+      G
Sbjct: 3   ATIDRRLSTLNPNAPVFDPVEFREVEDFSPKWWDLVTTSKWFRDFWLSANSENEFL---G 62

Query: 64  EDDFSNDIADFLPEAFDLDANEELRTMEAEFEEFIQAS 100
            DDFS                     ME EFEE I +S
Sbjct: 63  GDDFS--------------------VMEEEFEEMIASS 77

BLAST of Cp4.1LG01g17330 vs. NCBI nr
Match: gi|525507437|ref|NP_001267508.1| (protein EARLY RESPONSIVE TO DEHYDRATION 15-like [Cucumis sativus])

HSP 1 Score: 203.0 bits (515), Expect = 2.7e-49
Identity = 100/110 (90.91%), Postives = 105/110 (95.45%), Query Frame = 1

Query: 1   MALASVDGRSKLNPNAPLFIPAAYQVEDFSPQWWQLVTTSTWYRDYWLSQHQEDSDFYMD 60
           MALASV+G SKLNPNAPLFIPAAYQVEDFSPQWWQLVTTSTWYRDYWLSQHQE+SDFY+D
Sbjct: 1   MALASVEGSSKLNPNAPLFIPAAYQVEDFSPQWWQLVTTSTWYRDYWLSQHQEESDFYID 60

Query: 61  --GEDDFSNDIADFLPEAFDLDANEELRTMEAEFEEFIQASLTEGYHLEE 109
             GEDDFSNDIA+FLPEAFDLDANEELRTMEAEFEEFIQASL EGYH E+
Sbjct: 61  GEGEDDFSNDIAEFLPEAFDLDANEELRTMEAEFEEFIQASLNEGYHPEK 110

BLAST of Cp4.1LG01g17330 vs. NCBI nr
Match: gi|703123054|ref|XP_010102715.1| (hypothetical protein L484_015513 [Morus notabilis])

HSP 1 Score: 140.2 bits (352), Expect = 2.1e-30
Identity = 70/104 (67.31%), Postives = 82/104 (78.85%), Query Frame = 1

Query: 1   MALASVDGRSKLNPNAPLFIPAAY-QVEDFSPQWWQLVTTSTWYRDYWLSQHQEDSDFYM 60
           MAL S  GRS LNPNAPLFIPAA+ QVEDFSP+WWQL+TTS WY DYWLSQHQ++  FY 
Sbjct: 1   MALVS-GGRSTLNPNAPLFIPAAFRQVEDFSPEWWQLITTSPWYHDYWLSQHQDEDAFYS 60

Query: 61  DGEDDFSNDIADFLPEAFDLDANEELRTMEAEFEEFIQASLTEG 104
           + +DD  N +AD LPE FDLDA +E   +EA+FEEFI+ S TEG
Sbjct: 61  NADDDIDN-VADLLPETFDLDAGDEFSNIEAQFEEFIEFSETEG 102

BLAST of Cp4.1LG01g17330 vs. NCBI nr
Match: gi|802725118|ref|XP_012085962.1| (PREDICTED: protein EARLY RESPONSIVE TO DEHYDRATION 15 [Jatropha curcas])

HSP 1 Score: 136.7 bits (343), Expect = 2.4e-29
Identity = 68/105 (64.76%), Postives = 84/105 (80.00%), Query Frame = 1

Query: 1   MALASVDGRSKLNPNAPLFIPAAYQ-VEDFSPQWWQLVTTSTWYRDYWLSQHQEDSDFYM 60
           MAL S  GRS LNP+APLFIPAAYQ VEDFSP+WWQLVTTSTWYRDYWLSQHQ++  FY 
Sbjct: 1   MALVS-GGRSTLNPDAPLFIPAAYQQVEDFSPEWWQLVTTSTWYRDYWLSQHQDEEGFYD 60

Query: 61  DGEDDFSN--DIADFLPEAFDLDANEELRTMEAEFEEFIQASLTE 103
           + EDD  +  D+AD LP+ FDLDA E+  T+E +F+EF+++  T+
Sbjct: 61  NAEDDSYDACDVADLLPDTFDLDAGEDFSTLEVQFQEFVESYQTD 104

BLAST of Cp4.1LG01g17330 vs. NCBI nr
Match: gi|590635295|ref|XP_007028595.1| (Dehydration-induced protein, putative [Theobroma cacao])

HSP 1 Score: 135.6 bits (340), Expect = 5.2e-29
Identity = 70/101 (69.31%), Postives = 81/101 (80.20%), Query Frame = 1

Query: 1   MALASVDGRSKLNPNAPLFIPAAY-QVEDFSPQWWQLVTTSTWYRDYWLSQHQEDSDFYM 60
           MAL +  GRS LNPNAPLFIPA Y QVEDFSP+WWQLVTTSTWYRDYWLSQHQ++  FY 
Sbjct: 1   MALVA-GGRSTLNPNAPLFIPAVYRQVEDFSPEWWQLVTTSTWYRDYWLSQHQDEDGFYD 60

Query: 61  DGEDD--FSNDIADFLPEAFDLDANEELRTMEAEFEEFIQA 99
           + EDD    NDIAD LP+ FDL A+E+L  M+ +FEEFIQ+
Sbjct: 61  NAEDDGFDGNDIADLLPDTFDLVADEDLSGMDLQFEEFIQS 100

BLAST of Cp4.1LG01g17330 vs. NCBI nr
Match: gi|255578451|ref|XP_002530090.1| (PREDICTED: protein EARLY RESPONSIVE TO DEHYDRATION 15 [Ricinus communis])

HSP 1 Score: 134.4 bits (337), Expect = 1.2e-28
Identity = 71/111 (63.96%), Postives = 82/111 (73.87%), Query Frame = 1

Query: 1   MALASVDGRSKLNPNAPLFIPAAY-QVEDFSPQWWQLVTTSTWYRDYWLSQHQEDSDFYM 60
           MAL S  GRS LNP+APLFIPAAY QVEDFSP+WWQLVT STWYRDYWLSQHQ++  FY 
Sbjct: 1   MALVS-GGRSTLNPDAPLFIPAAYRQVEDFSPEWWQLVTNSTWYRDYWLSQHQDEDGFYD 60

Query: 61  DGEDD---FSNDIADFLPEAFDLDANEELRTMEAEFEEFIQASLTEGYHLE 108
           + EDD     ND+ D LPE FDLDA E   ++EA+F EF+ +  TE   LE
Sbjct: 61  NAEDDEGFDGNDVVDLLPETFDLDAGEYFSSLEAQFHEFVDSYETEVDGLE 110

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
ERD15_ARATH1.4e-2159.60Protein EARLY RESPONSIVE TO DEHYDRATION 15 OS=Arabidopsis thaliana GN=ERD15 PE=1... [more]
CID2_ARATH9.0e-1345.92Polyadenylate-binding protein-interacting protein 2 OS=Arabidopsis thaliana GN=C... [more]
Match NameE-valueIdentityDescription
Q6ELF8_CUCSA1.9e-4990.91Poly(A)-binding protein C-terminal interacting protein 243 OS=Cucumis sativus GN... [more]
W9S851_9ROSA1.5e-3067.31Uncharacterized protein OS=Morus notabilis GN=L484_015513 PE=4 SV=1[more]
A0A067K1V9_JATCU1.6e-2964.76Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22456 PE=4 SV=1[more]
A0A061EXG3_THECC3.6e-2969.31Dehydration-induced protein, putative OS=Theobroma cacao GN=TCM_024484 PE=4 SV=1[more]
B9SVS1_RICCO8.1e-2963.96Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0255020 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT2G41430.17.8e-2359.60 dehydration-induced protein (ERD15)[more]
AT4G14270.15.1e-1445.92 Protein containing PAM2 motif which mediates interaction with the PA... [more]
Match NameE-valueIdentityDescription
gi|525507437|ref|NP_001267508.1|2.7e-4990.91protein EARLY RESPONSIVE TO DEHYDRATION 15-like [Cucumis sativus][more]
gi|703123054|ref|XP_010102715.1|2.1e-3067.31hypothetical protein L484_015513 [Morus notabilis][more]
gi|802725118|ref|XP_012085962.1|2.4e-2964.76PREDICTED: protein EARLY RESPONSIVE TO DEHYDRATION 15 [Jatropha curcas][more]
gi|590635295|ref|XP_007028595.1|5.2e-2969.31Dehydration-induced protein, putative [Theobroma cacao][more]
gi|255578451|ref|XP_002530090.1|1.2e-2863.96PREDICTED: protein EARLY RESPONSIVE TO DEHYDRATION 15 [Ricinus communis][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR009818Ataxin-2_C
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG01g17330.1Cp4.1LG01g17330.1mRNA


Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR009818Ataxin-2, C-terminalPFAMPF07145PAM2coord: 9..21
score: 1.
NoneNo IPR availablePANTHERPTHR33790FAMILY NOT NAMEDcoord: 2..102
score: 7.0
NoneNo IPR availablePANTHERPTHR33790:SF1PROTEIN EARLY RESPONSIVE TO DEHYDRATION 15coord: 2..102
score: 7.0

The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG01g17330CmaCh03G002020Cucurbita maxima (Rimu)cmacpeB666
Cp4.1LG01g17330CmoCh03G001840Cucurbita moschata (Rifu)cmocpeB617
Cp4.1LG01g17330Carg27660Silver-seed gourdcarcpeB0314
The following gene(s) are paralogous to this gene:

None