Carg27660 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg27660
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	protein EARLY RESPONSIVE TO DEHYDRATION 15
Location	Cucurbita_argyrosperma_scaffold_206 : 138462 .. 138788 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTCTAGCATCTGTTGATGGAAGATCAAAGCTAAACCCGAACGCCCCACTTTTCATCCCGGCTGCATACCAGGTGGAGGACTTCTCCCCGCAATGGTGGCAATTGGTCACAACCTCAACATGGTACCGCGATTACTGGCTCAGCCAACACCAGGAAGACGGTGACTTCTACATGGACGGCGAAGATGATTTCAGCAACGACATTGCTGATTTTTTGCCAGAGGCATTCGATCTCGATGCAAACGAAGAACTGCGCACCATGGAAGCTGAATTTGAGGAGTTCATTCAAGCTTCCCTTACTGAAGGGTACCACCTCGAGAAGTAG

mRNA sequence

ATGGCTCTAGCATCTGTTGATGGAAGATCAAAGCTAAACCCGAACGCCCCACTTTTCATCCCGGCTGCATACCAGGTGGAGGACTTCTCCCCGCAATGGTGGCAATTGGTCACAACCTCAACATGGTACCGCGATTACTGGCTCAGCCAACACCAGGAAGACGGTGACTTCTACATGGACGGCGAAGATGATTTCAGCAACGACATTGCTGATTTTTTGCCAGAGGCATTCGATCTCGATGCAAACGAAGAACTGCGCACCATGGAAGCTGAATTTGAGGAGTTCATTCAAGCTTCCCTTACTGAAGGGTACCACCTCGAGAAGTAG

Coding sequence (CDS)

ATGGCTCTAGCATCTGTTGATGGAAGATCAAAGCTAAACCCGAACGCCCCACTTTTCATCCCGGCTGCATACCAGGTGGAGGACTTCTCCCCGCAATGGTGGCAATTGGTCACAACCTCAACATGGTACCGCGATTACTGGCTCAGCCAACACCAGGAAGACGGTGACTTCTACATGGACGGCGAAGATGATTTCAGCAACGACATTGCTGATTTTTTGCCAGAGGCATTCGATCTCGATGCAAACGAAGAACTGCGCACCATGGAAGCTGAATTTGAGGAGTTCATTCAAGCTTCCCTTACTGAAGGGTACCACCTCGAGAAGTAG

Protein sequence

MALASVDGRSKLNPNAPLFIPAAYQVEDFSPQWWQLVTTSTWYRDYWLSQHQEDGDFYMDGEDDFSNDIADFLPEAFDLDANEELRTMEAEFEEFIQASLTEGYHLEK

Homology

[Close]

BLAST of Carg27660 vs. NCBI nr
Match: XP_023517029.1 (protein EARLY RESPONSIVE TO DEHYDRATION 15-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 221.1 bits (562), Expect = 1.8e-54
Identity = 106/108 (98.15%), Postives = 107/108 (99.07%), Query Frame = 0


Query: 1   MALASVDGRSKLNPNAPLFIPAAYQVEDFSPQWWQLVTTSTWYRDYWLSQHQEDGDFYMD 60
           MALASVDGRSKLNPNAPLFIPAAYQVEDFSPQWWQLVTTSTWYRDYWLSQHQED DFYMD
Sbjct: 1   MALASVDGRSKLNPNAPLFIPAAYQVEDFSPQWWQLVTTSTWYRDYWLSQHQEDSDFYMD 60

Query: 61  GEDDFSNDIADFLPEAFDLDANEELRTMEAEFEEFIQASLTEGYHLEK 109
           GEDDFSNDIADFLPEAFDLDANEELRTMEAEFEEFIQASLTEGYHLE+
Sbjct: 61  GEDDFSNDIADFLPEAFDLDANEELRTMEAEFEEFIQASLTEGYHLEE 108

[Close]

BLAST of Carg27660 vs. NCBI nr
Match: XP_022932995.1 (protein EARLY RESPONSIVE TO DEHYDRATION 15-like [Cucurbita moschata] >XP_022932996.1 protein EARLY RESPONSIVE TO DEHYDRATION 15-like [Cucurbita moschata])

HSP 1 Score: 220.7 bits (561), Expect = 2.4e-54
Identity = 106/108 (98.15%), Postives = 107/108 (99.07%), Query Frame = 0


Query: 1   MALASVDGRSKLNPNAPLFIPAAYQVEDFSPQWWQLVTTSTWYRDYWLSQHQEDGDFYMD 60
           MALASVDGRSKLNPNAPLFIPAAYQVEDFSPQWWQLVTTSTWYR+YWLSQHQEDGDFYMD
Sbjct: 1   MALASVDGRSKLNPNAPLFIPAAYQVEDFSPQWWQLVTTSTWYRNYWLSQHQEDGDFYMD 60

Query: 61  GEDDFSNDIADFLPEAFDLDANEELRTMEAEFEEFIQASLTEGYHLEK 109
           GEDD SNDIADFLPEAFDLDANEELRTMEAEFEEFIQASLTEGYHLEK
Sbjct: 61  GEDDLSNDIADFLPEAFDLDANEELRTMEAEFEEFIQASLTEGYHLEK 108

[Close]

BLAST of Carg27660 vs. NCBI nr
Match: XP_022978619.1 (protein EARLY RESPONSIVE TO DEHYDRATION 15-like [Cucurbita maxima] >XP_022978620.1 protein EARLY RESPONSIVE TO DEHYDRATION 15-like [Cucurbita maxima])

HSP 1 Score: 216.9 bits (551), Expect = 3.5e-53
Identity = 104/108 (96.30%), Postives = 106/108 (98.15%), Query Frame = 0


Query: 1   MALASVDGRSKLNPNAPLFIPAAYQVEDFSPQWWQLVTTSTWYRDYWLSQHQEDGDFYMD 60
           MALASVDGRSKLNPNAPLFIPAAYQVEDFSPQWWQLVTTSTWYRDYWLSQHQE+ DFYMD
Sbjct: 1   MALASVDGRSKLNPNAPLFIPAAYQVEDFSPQWWQLVTTSTWYRDYWLSQHQEESDFYMD 60

Query: 61  GEDDFSNDIADFLPEAFDLDANEELRTMEAEFEEFIQASLTEGYHLEK 109
           GEDDFS DIADFLPEAFDLDA+EELRTMEAEFEEFIQASLTEGYHLEK
Sbjct: 61  GEDDFSTDIADFLPEAFDLDASEELRTMEAEFEEFIQASLTEGYHLEK 108

[Close]

BLAST of Carg27660 vs. NCBI nr
Match: NP_001267508.1 (protein EARLY RESPONSIVE TO DEHYDRATION 15-like [Cucumis sativus] >XP_008449215.1 PREDICTED: protein EARLY RESPONSIVE TO DEHYDRATION 15 [Cucumis melo] >AAQ18142.1 poly(A)-binding protein C-terminal interacting protein 243 [Cucumis sativus] >KGN53972.1 hypothetical protein Csa_4G214830 [Cucumis sativus])

HSP 1 Score: 204.5 bits (519), Expect = 1.8e-49
Identity = 100/110 (90.91%), Postives = 104/110 (94.55%), Query Frame = 0


Query: 1   MALASVDGRSKLNPNAPLFIPAAYQVEDFSPQWWQLVTTSTWYRDYWLSQHQEDGDFYMD 60
           MALASV+G SKLNPNAPLFIPAAYQVEDFSPQWWQLVTTSTWYRDYWLSQHQE+ DFY+D
Sbjct: 1   MALASVEGSSKLNPNAPLFIPAAYQVEDFSPQWWQLVTTSTWYRDYWLSQHQEESDFYID 60

Query: 61  --GEDDFSNDIADFLPEAFDLDANEELRTMEAEFEEFIQASLTEGYHLEK 109
             GEDDFSNDIA+FLPEAFDLDANEELRTMEAEFEEFIQASL EGYH EK
Sbjct: 61  GEGEDDFSNDIAEFLPEAFDLDANEELRTMEAEFEEFIQASLNEGYHPEK 110

[Close]

BLAST of Carg27660 vs. NCBI nr
Match: XP_022153878.1 (protein EARLY RESPONSIVE TO DEHYDRATION 15 [Momordica charantia])

HSP 1 Score: 190.7 bits (483), Expect = 2.7e-45
Identity = 96/108 (88.89%), Postives = 100/108 (92.59%), Query Frame = 0


Query: 1   MALASVDGRSKLNPNAPLFIPAAYQVEDFSPQWWQLVTTSTWYRDYWLSQHQEDGDFYMD 60
           MALASV+GRS LNPNAPLFIPAAYQVEDFSPQWWQLVTTSTWYRDYWLSQHQE+ DFY+ 
Sbjct: 1   MALASVEGRSTLNPNAPLFIPAAYQVEDFSPQWWQLVTTSTWYRDYWLSQHQEESDFYI- 60

Query: 61  GEDDF-SNDIADFLPEAFDLDANEELRTMEAEFEEFIQASLTEGYHLE 108
            EDDF SNDIAD LPEAFDLDANEELRTMEAEFEEFIQASLTE +H E
Sbjct: 61  -EDDFNSNDIADLLPEAFDLDANEELRTMEAEFEEFIQASLTEAHHPE 106

[Close]

BLAST of Carg27660 vs. TAIR10
Match: AT2G41430.1 (dehydration-induced protein (ERD15))

HSP 1 Score: 104.0 bits (258), Expect = 6.0e-23
Identity = 59/99 (59.60%), Postives = 72/99 (72.73%), Query Frame = 0


Query: 3  LASVDG-RSKLNPNAPLFIPAAY-QVEDFSPQWWQLVTTSTWYRDYWLSQHQEDGD-FYM 62
          +A V G RS LNP+APLFIPAA  QVEDFSP+WWQLVTTSTWY DYW+SQ Q+  D FY 
Sbjct: 1  MAMVSGRRSTLNPDAPLFIPAAVRQVEDFSPEWWQLVTTSTWYPDYWISQQQQGADGFYD 60

Query: 63 DGEDDFSN---DIADFLPEAFDLDANEE-LRTMEAEFEE 95
          +GE++      D+AD LPE+FD D  E+   T  AEF++
Sbjct: 61 NGENENGGGHIDVADLLPESFDFDDMEDFFDTDAAEFDQ 99

[Close]

BLAST of Carg27660 vs. TAIR10
Match: AT4G14270.1 (Protein containing PAM2 motif which mediates interaction with the PABC domain of polyadenyl binding proteins.)

HSP 1 Score: 74.3 bits (181), Expect = 5.1e-14
Identity = 46/98 (46.94%), Postives = 58/98 (59.18%), Query Frame = 0


Query: 4   ASVDGR-SKLNPNAPLFIPAAY-QVEDFSPQWWQLVTTSTWYRDYWLSQHQEDGDFYMDG 63
           A++D R S LNPNAP+F P  + +VEDFSP+WW LVTTS W+RD+WLS + E+ +F   G
Sbjct: 3   ATIDRRLSTLNPNAPVFDPVEFREVEDFSPKWWDLVTTSKWFRDFWLSANSEN-EFL--G 62

Query: 64  EDDFSNDIADFLPEAFDLDANEELRTMEAEFEEFIQAS 100
            DDFS                     ME EFEE I +S
Sbjct: 63  GDDFS--------------------VMEEEFEEMIASS 77

[Close]

BLAST of Carg27660 vs. Swiss-Prot
Match: sp|Q39096|ERD15_ARATH (Protein EARLY RESPONSIVE TO DEHYDRATION 15 OS=Arabidopsis thaliana OX=3702 GN=ERD15 PE=1 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 1.1e-21
Identity = 59/99 (59.60%), Postives = 72/99 (72.73%), Query Frame = 0


Query: 3  LASVDG-RSKLNPNAPLFIPAAY-QVEDFSPQWWQLVTTSTWYRDYWLSQHQEDGD-FYM 62
          +A V G RS LNP+APLFIPAA  QVEDFSP+WWQLVTTSTWY DYW+SQ Q+  D FY 
Sbjct: 1  MAMVSGRRSTLNPDAPLFIPAAVRQVEDFSPEWWQLVTTSTWYPDYWISQQQQGADGFYD 60

Query: 63 DGEDDFSN---DIADFLPEAFDLDANEE-LRTMEAEFEE 95
          +GE++      D+AD LPE+FD D  E+   T  AEF++
Sbjct: 61 NGENENGGGHIDVADLLPESFDFDDMEDFFDTDAAEFDQ 99

[Close]

BLAST of Carg27660 vs. Swiss-Prot
Match: sp|Q94AR4|CID2_ARATH (Polyadenylate-binding protein-interacting protein 2 OS=Arabidopsis thaliana OX=3702 GN=CID2 PE=2 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 9.1e-13
Identity = 46/98 (46.94%), Postives = 58/98 (59.18%), Query Frame = 0


Query: 4   ASVDGR-SKLNPNAPLFIPAAY-QVEDFSPQWWQLVTTSTWYRDYWLSQHQEDGDFYMDG 63
           A++D R S LNPNAP+F P  + +VEDFSP+WW LVTTS W+RD+WLS + E+ +F   G
Sbjct: 3   ATIDRRLSTLNPNAPVFDPVEFREVEDFSPKWWDLVTTSKWFRDFWLSANSEN-EFL--G 62

Query: 64  EDDFSNDIADFLPEAFDLDANEELRTMEAEFEEFIQAS 100
            DDFS                     ME EFEE I +S
Sbjct: 63  GDDFS--------------------VMEEEFEEMIASS 77

[Close]

BLAST of Carg27660 vs. TrEMBL
Match: tr|Q6ELF8|Q6ELF8_CUCSA (Poly(A)-binding protein C-terminal interacting protein 243 OS=Cucumis sativus OX=3659 GN=Csa_4G214830 PE=2 SV=1)

HSP 1 Score: 204.5 bits (519), Expect = 1.2e-49
Identity = 100/110 (90.91%), Postives = 104/110 (94.55%), Query Frame = 0


Query: 1   MALASVDGRSKLNPNAPLFIPAAYQVEDFSPQWWQLVTTSTWYRDYWLSQHQEDGDFYMD 60
           MALASV+G SKLNPNAPLFIPAAYQVEDFSPQWWQLVTTSTWYRDYWLSQHQE+ DFY+D
Sbjct: 1   MALASVEGSSKLNPNAPLFIPAAYQVEDFSPQWWQLVTTSTWYRDYWLSQHQEESDFYID 60

Query: 61  --GEDDFSNDIADFLPEAFDLDANEELRTMEAEFEEFIQASLTEGYHLEK 109
             GEDDFSNDIA+FLPEAFDLDANEELRTMEAEFEEFIQASL EGYH EK
Sbjct: 61  GEGEDDFSNDIAEFLPEAFDLDANEELRTMEAEFEEFIQASLNEGYHPEK 110

[Close]

BLAST of Carg27660 vs. TrEMBL
Match: tr|A0A1S3BLI8|A0A1S3BLI8_CUCME (protein EARLY RESPONSIVE TO DEHYDRATION 15 OS=Cucumis melo OX=3656 GN=LOC103491162 PE=4 SV=1)

HSP 1 Score: 204.5 bits (519), Expect = 1.2e-49
Identity = 100/110 (90.91%), Postives = 104/110 (94.55%), Query Frame = 0


Query: 1   MALASVDGRSKLNPNAPLFIPAAYQVEDFSPQWWQLVTTSTWYRDYWLSQHQEDGDFYMD 60
           MALASV+G SKLNPNAPLFIPAAYQVEDFSPQWWQLVTTSTWYRDYWLSQHQE+ DFY+D
Sbjct: 1   MALASVEGSSKLNPNAPLFIPAAYQVEDFSPQWWQLVTTSTWYRDYWLSQHQEESDFYID 60

Query: 61  --GEDDFSNDIADFLPEAFDLDANEELRTMEAEFEEFIQASLTEGYHLEK 109
             GEDDFSNDIA+FLPEAFDLDANEELRTMEAEFEEFIQASL EGYH EK
Sbjct: 61  GEGEDDFSNDIAEFLPEAFDLDANEELRTMEAEFEEFIQASLNEGYHPEK 110

[Close]

BLAST of Carg27660 vs. TrEMBL
Match: tr|W9S851|W9S851_9ROSA (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_015513 PE=4 SV=1)

HSP 1 Score: 140.6 bits (353), Expect = 2.1e-30
Identity = 70/104 (67.31%), Postives = 82/104 (78.85%), Query Frame = 0


Query: 1   MALASVDGRSKLNPNAPLFIPAAY-QVEDFSPQWWQLVTTSTWYRDYWLSQHQEDGDFYM 60
           MAL S  GRS LNPNAPLFIPAA+ QVEDFSP+WWQL+TTS WY DYWLSQHQ++  FY 
Sbjct: 1   MALVS-GGRSTLNPNAPLFIPAAFRQVEDFSPEWWQLITTSPWYHDYWLSQHQDEDAFYS 60

Query: 61  DGEDDFSNDIADFLPEAFDLDANEELRTMEAEFEEFIQASLTEG 104
           + +DD  N +AD LPE FDLDA +E   +EA+FEEFI+ S TEG
Sbjct: 61  NADDDIDN-VADLLPETFDLDAGDEFSNIEAQFEEFIEFSETEG 102

[Close]

BLAST of Carg27660 vs. TrEMBL
Match: tr|A0A067K1V9|A0A067K1V9_JATCU (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_22456 PE=4 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 3.0e-29
Identity = 68/105 (64.76%), Postives = 84/105 (80.00%), Query Frame = 0


Query: 1   MALASVDGRSKLNPNAPLFIPAAY-QVEDFSPQWWQLVTTSTWYRDYWLSQHQEDGDFYM 60
           MAL S  GRS LNP+APLFIPAAY QVEDFSP+WWQLVTTSTWYRDYWLSQHQ++  FY 
Sbjct: 1   MALVS-GGRSTLNPDAPLFIPAAYQQVEDFSPEWWQLVTTSTWYRDYWLSQHQDEEGFYD 60

Query: 61  DGEDDFSN--DIADFLPEAFDLDANEELRTMEAEFEEFIQASLTE 103
           + EDD  +  D+AD LP+ FDLDA E+  T+E +F+EF+++  T+
Sbjct: 61  NAEDDSYDACDVADLLPDTFDLDAGEDFSTLEVQFQEFVESYQTD 104

[Close]

BLAST of Carg27660 vs. TrEMBL
Match: tr|A0A061EXG3|A0A061EXG3_THECC (Dehydration-induced protein, putative OS=Theobroma cacao OX=3641 GN=TCM_024484 PE=4 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 5.2e-29
Identity = 70/101 (69.31%), Postives = 81/101 (80.20%), Query Frame = 0


Query: 1   MALASVDGRSKLNPNAPLFIPAAY-QVEDFSPQWWQLVTTSTWYRDYWLSQHQEDGDFYM 60
           MAL +  GRS LNPNAPLFIPA Y QVEDFSP+WWQLVTTSTWYRDYWLSQHQ++  FY 
Sbjct: 1   MALVA-GGRSTLNPNAPLFIPAVYRQVEDFSPEWWQLVTTSTWYRDYWLSQHQDEDGFYD 60

Query: 61  DGEDD--FSNDIADFLPEAFDLDANEELRTMEAEFEEFIQA 99
           + EDD    NDIAD LP+ FDL A+E+L  M+ +FEEFIQ+
Sbjct: 61  NAEDDGFDGNDIADLLPDTFDLVADEDLSGMDLQFEEFIQS 100

The following BLAST results are available for this feature:

BLAST of Carg27660 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023517029.1	1.8e-54	98.15	protein EARLY RESPONSIVE TO DEHYDRATION 15-like [Cucurbita pepo subsp. pepo]	[more]
XP_022932995.1	2.4e-54	98.15	protein EARLY RESPONSIVE TO DEHYDRATION 15-like [Cucurbita moschata] >XP_0229329...	[more]
XP_022978619.1	3.5e-53	96.30	protein EARLY RESPONSIVE TO DEHYDRATION 15-like [Cucurbita maxima] >XP_022978620...	[more]
NP_001267508.1	1.8e-49	90.91	protein EARLY RESPONSIVE TO DEHYDRATION 15-like [Cucumis sativus] >XP_008449215....	[more]
XP_022153878.1	2.7e-45	88.89	protein EARLY RESPONSIVE TO DEHYDRATION 15 [Momordica charantia]	[more]

BLAST of Carg27660 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G41430.1	6.0e-23	59.60	dehydration-induced protein (ERD15)	[more]
AT4G14270.1	5.1e-14	46.94	Protein containing PAM2 motif which mediates interaction with the PABC domain of...	[more]

BLAST of Carg27660 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q39096\|ERD15_ARATH	1.1e-21	59.60	Protein EARLY RESPONSIVE TO DEHYDRATION 15 OS=Arabidopsis thaliana OX=3702 GN=ER...	[more]
sp\|Q94AR4\|CID2_ARATH	9.1e-13	46.94	Polyadenylate-binding protein-interacting protein 2 OS=Arabidopsis thaliana OX=3...	[more]

BLAST of Carg27660 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|Q6ELF8\|Q6ELF8_CUCSA	1.2e-49	90.91	Poly(A)-binding protein C-terminal interacting protein 243 OS=Cucumis sativus OX...	[more]
tr\|A0A1S3BLI8\|A0A1S3BLI8_CUCME	1.2e-49	90.91	protein EARLY RESPONSIVE TO DEHYDRATION 15 OS=Cucumis melo OX=3656 GN=LOC1034911...	[more]
tr\|W9S851\|W9S851_9ROSA	2.1e-30	67.31	Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_015513 PE=4 SV=1	[more]
tr\|A0A067K1V9\|A0A067K1V9_JATCU	3.0e-29	64.76	Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_22456 PE=4 SV=1	[more]
tr\|A0A061EXG3\|A0A061EXG3_THECC	5.2e-29	69.31	Dehydration-induced protein, putative OS=Theobroma cacao OX=3641 GN=TCM_024484 P...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR009818	Ataxin-2_C

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg27660-RA	Carg27660-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009818	Ataxin-2, C-terminal	PFAM	PF07145	PAM2	coord: 9..21 e-value: 1.1E-4 score: 21.6
None	No IPR available	PANTHER	PTHR33790:SF1	POLYADENYLATE-BINDING PROTEIN-INTERACTING PROTEIN 2-RELATED	coord: 1..101
None	No IPR available	PANTHER	PTHR33790	FAMILY NOT NAMED	coord: 1..101

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg27660	CmoCh03G001840	Cucurbita moschata (Rifu)	carcmoB0310
Carg27660	Cp4.1LG01g17330	Cucurbita pepo (Zucchini)	carcpeB0314

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:

None