CmoCh01G019180 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh01G019180
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionUnknown protein
LocationCmo_Chr01 : 13738705 .. 13738998 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCGGAATCAATCTCATCTCCGCCGCCGCCGCCGCCGCCGTCCTCCTGGTTTTAGCTTCTATCTTCAATAATAACATTCCACACACCCAAGGACTAAGGTTGCTGCCAATGGAGCAGGAGCATCCAGCCGTCCATCTCAATTCGAGGCCACAGTCATTTCACCCCTCTCCCATTGCTGCTACAGACGTGGACGTGCATGGCGGCGACTTCCGTCCCACCACACCCGGCCACAGCCCCGGCGCCGGTCACGGCCTTGCGCCGGACAGCCACGTGGATTCCAAAATCCATTAG

mRNA sequence

ATGGCCGGAATCAATCTCATCTCCGCCGCCGCCGCCGCCGCCGTCCTCCTGGTTTTAGCTTCTATCTTCAATAATAACATTCCACACACCCAAGGACTAAGGTTGCTGCCAATGGAGCAGGAGCATCCAGCCGTCCATCTCAATTCGAGGCCACAGTCATTTCACCCCTCTCCCATTGCTGCTACAGACGTGGACGTGCATGGCGGCGACTTCCGTCCCACCACACCCGGCCACAGCCCCGGCGCCGGTCACGGCCTTGCGCCGGACAGCCACGTGGATTCCAAAATCCATTAG

Coding sequence (CDS)

ATGGCCGGAATCAATCTCATCTCCGCCGCCGCCGCCGCCGCCGTCCTCCTGGTTTTAGCTTCTATCTTCAATAATAACATTCCACACACCCAAGGACTAAGGTTGCTGCCAATGGAGCAGGAGCATCCAGCCGTCCATCTCAATTCGAGGCCACAGTCATTTCACCCCTCTCCCATTGCTGCTACAGACGTGGACGTGCATGGCGGCGACTTCCGTCCCACCACACCCGGCCACAGCCCCGGCGCCGGTCACGGCCTTGCGCCGGACAGCCACGTGGATTCCAAAATCCATTAG
Homology
[Close]
BLAST of CmoCh01G019180 vs. TrEMBL
Match: A0A0A0L3I5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G639110 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 8.4e-09
Identity = 46/108 (42.59%), Postives = 63/108 (58.33%), Query Frame = 1 

Query: 4   INLISAAAAAAVLLVLASIFNNN-----IPHTQGLRLLPMEQE-HPAVH-------LNSR 63
           I LIS   A   +L+L+S F+ +     +P T+ L  + + ++ HP +        L S 
Sbjct: 6   IKLISTFVA---ILILSSTFHVSHTQARMPPTKNLDRVEISKDLHPKIEETVAVAPLKSE 65

Query: 64  PQSFHPSPIAAT-DVDVHGGDFRPTTPGHSPGAGHGLAPDSHVDSKIH 98
           P +F       T + +V GGDFRPTTPGHSPGAGH +AP SH+DSKIH
Sbjct: 66  PLAFDRDTFFTTSNAEVLGGDFRPTTPGHSPGAGHSVAPTSHMDSKIH 110

[Close]
BLAST of CmoCh01G019180 vs. NCBI nr
Match: gi|700200014|gb|KGN55172.1| (hypothetical protein Csa_4G639110 [Cucumis sativus])

HSP 1 Score: 67.8 bits (164), Expect = 1.2e-08
Identity = 46/108 (42.59%), Postives = 63/108 (58.33%), Query Frame = 1 

Query: 4   INLISAAAAAAVLLVLASIFNNN-----IPHTQGLRLLPMEQE-HPAVH-------LNSR 63
           I LIS   A   +L+L+S F+ +     +P T+ L  + + ++ HP +        L S 
Sbjct: 6   IKLISTFVA---ILILSSTFHVSHTQARMPPTKNLDRVEISKDLHPKIEETVAVAPLKSE 65

Query: 64  PQSFHPSPIAAT-DVDVHGGDFRPTTPGHSPGAGHGLAPDSHVDSKIH 98
           P +F       T + +V GGDFRPTTPGHSPGAGH +AP SH+DSKIH
Sbjct: 66  PLAFDRDTFFTTSNAEVLGGDFRPTTPGHSPGAGHSVAPTSHMDSKIH 110

The following BLAST results are available for this feature:
BLAST of CmoCh01G019180 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmoCh01G019180 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L3I5_CUCSA8.4e-0942.59Uncharacterized protein OS=Cucumis sativus GN=Csa_4G639110 PE=4 SV=1[more]
BLAST of CmoCh01G019180 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmoCh01G019180 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700200014|gb|KGN55172.1|1.2e-0842.59hypothetical protein Csa_4G639110 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
molecular_function GO:0003676 nucleic acid binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh01G019180.1CmoCh01G019180.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh01G019180Cucsa.123520Cucumber (Gy14) v1cgycmoB0319
CmoCh01G019180CmaCh01G018590Cucurbita maxima (Rimu)cmacmoB469
CmoCh01G019180Cla020691Watermelon (97103) v1cmowmB434
CmoCh01G019180Csa4G639110Cucumber (Chinese Long) v2cmocuB461
CmoCh01G019180MELO3C016735Melon (DHL92) v3.5.1cmomeB422
CmoCh01G019180ClCG05G019710Watermelon (Charleston Gray)cmowcgB412
CmoCh01G019180CSPI04G23900Wild cucumber (PI 183967)cmocpiB465
CmoCh01G019180Cp4.1LG06g01520Cucurbita pepo (Zucchini)cmocpeB465
CmoCh01G019180Cp4.1LG02g06940Cucurbita pepo (Zucchini)cmocpeB450
CmoCh01G019180CsaV3_4G034130Cucumber (Chinese Long) v3cmocucB0551
CmoCh01G019180Cla97C05G101310Watermelon (97103) v2cmowmbB461
CmoCh01G019180Bhi09G002754Wax gourdcmowgoB0598
CmoCh01G019180Carg08764Silver-seed gourdcarcmoB0146
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CmoCh01G019180CmoCh09G002060Cucurbita moschata (Rifu)cmocmoB017
The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh01G019180Wild cucumber (PI 183967)cmocpiB428
CmoCh01G019180Wild cucumber (PI 183967)cmocpiB482
CmoCh01G019180Wild cucumber (PI 183967)cmocpiB491
CmoCh01G019180Cucumber (Chinese Long) v2cmocuB424
CmoCh01G019180Cucumber (Chinese Long) v2cmocuB475
CmoCh01G019180Melon (DHL92) v3.5.1cmomeB403
CmoCh01G019180Melon (DHL92) v3.5.1cmomeB442
CmoCh01G019180Watermelon (Charleston Gray)cmowcgB395
CmoCh01G019180Watermelon (Charleston Gray)cmowcgB435
CmoCh01G019180Watermelon (97103) v1cmowmB416
CmoCh01G019180Watermelon (97103) v1cmowmB445
CmoCh01G019180Cucurbita pepo (Zucchini)cmocpeB474
CmoCh01G019180Bottle gourd (USVL1VR-Ls)cmolsiB390
CmoCh01G019180Bottle gourd (USVL1VR-Ls)cmolsiB412
CmoCh01G019180Bottle gourd (USVL1VR-Ls)cmolsiB442
CmoCh01G019180Cucumber (Gy14) v2cgybcmoB193
CmoCh01G019180Cucumber (Gy14) v2cgybcmoB485
CmoCh01G019180Melon (DHL92) v3.6.1cmomedB452
CmoCh01G019180Melon (DHL92) v3.6.1cmomedB461
CmoCh01G019180Melon (DHL92) v3.6.1cmomedB486
CmoCh01G019180Silver-seed gourdcarcmoB1044
CmoCh01G019180Cucumber (Chinese Long) v3cmocucB0510
CmoCh01G019180Watermelon (97103) v2cmowmbB486
CmoCh01G019180Wax gourdcmowgoB0570
CmoCh01G019180Cucurbita moschata (Rifu)cmocmoB105
CmoCh01G019180Cucurbita moschata (Rifu)cmocmoB141
CmoCh01G019180Cucurbita moschata (Rifu)cmocmoB352
CmoCh01G019180Cucurbita moschata (Rifu)cmocmoB369
CmoCh01G019180Cucurbita moschata (Rifu)cmocmoB376
CmoCh01G019180Cucumber (Gy14) v1cgycmoB0220
CmoCh01G019180Cucumber (Gy14) v1cgycmoB0626
CmoCh01G019180Cucumber (Gy14) v1cgycmoB0642
CmoCh01G019180Cucurbita maxima (Rimu)cmacmoB047
CmoCh01G019180Cucurbita maxima (Rimu)cmacmoB646
CmoCh01G019180Cucurbita maxima (Rimu)cmacmoB851