Cp4.1LG02g06940 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG02g06940
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionUnknown protein
LocationCp4.1LG02 : 855637 .. 855921 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCGGAATCAATCTCATCTCCGCCGCCGCCGTCCTCCTGGTTTTAGCTTCTATCTTCAATAATAACATTTCACACACCCAAGGACTAAGGTTGCTGCCAATGGAGCAGGAGCATCCAGCCGTCCATCTCAATTCGAGCCCACAGTCATTTCACCCCTCTCCCATTGCTGCTACAGACGTGGACGTGCATGGCGGCGACTTCCGTCCCACCACACCCGGCCACAGCCCCGGCGCCGGTCACGGCCTTGCGCCGGACAGCCACGTGGATTCCAAAATCCATTAG

mRNA sequence

ATGGCCGGAATCAATCTCATCTCCGCCGCCGCCGTCCTCCTGGTTTTAGCTTCTATCTTCAATAATAACATTTCACACACCCAAGGACTAAGGTTGCTGCCAATGGAGCAGGAGCATCCAGCCGTCCATCTCAATTCGAGCCCACAGTCATTTCACCCCTCTCCCATTGCTGCTACAGACGTGGACGTGCATGGCGGCGACTTCCGTCCCACCACACCCGGCCACAGCCCCGGCGCCGGTCACGGCCTTGCGCCGGACAGCCACGTGGATTCCAAAATCCATTAG

Coding sequence (CDS)

ATGGCCGGAATCAATCTCATCTCCGCCGCCGCCGTCCTCCTGGTTTTAGCTTCTATCTTCAATAATAACATTTCACACACCCAAGGACTAAGGTTGCTGCCAATGGAGCAGGAGCATCCAGCCGTCCATCTCAATTCGAGCCCACAGTCATTTCACCCCTCTCCCATTGCTGCTACAGACGTGGACGTGCATGGCGGCGACTTCCGTCCCACCACACCCGGCCACAGCCCCGGCGCCGGTCACGGCCTTGCGCCGGACAGCCACGTGGATTCCAAAATCCATTAG

Protein sequence

MAGINLISAAAVLLVLASIFNNNISHTQGLRLLPMEQEHPAVHLNSSPQSFHPSPIAATDVDVHGGDFRPTTPGHSPGAGHGLAPDSHVDSKIH
Homology
[Close]
BLAST of Cp4.1LG02g06940 vs. TrEMBL
Match: A0A0A0L3I5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G639110 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 5.6e-10
Identity = 47/107 (43.93%), Postives = 60/107 (56.07%), Query Frame = 1 

Query: 4   INLISAAAVLLVLASIFNNNISHTQGL--------RLLPMEQEHPAVH-------LNSSP 63
           I LIS    +L+L+S F+  +SHTQ          R+   +  HP +        L S P
Sbjct: 6   IKLISTFVAILILSSTFH--VSHTQARMPPTKNLDRVEISKDLHPKIEETVAVAPLKSEP 65

Query: 64  QSFHPSPIAAT-DVDVHGGDFRPTTPGHSPGAGHGLAPDSHVDSKIH 95
            +F       T + +V GGDFRPTTPGHSPGAGH +AP SH+DSKIH
Sbjct: 66  LAFDRDTFFTTSNAEVLGGDFRPTTPGHSPGAGHSVAPTSHMDSKIH 110

[Close]
BLAST of Cp4.1LG02g06940 vs. NCBI nr
Match: gi|700200014|gb|KGN55172.1| (hypothetical protein Csa_4G639110 [Cucumis sativus])

HSP 1 Score: 71.6 bits (174), Expect = 8.1e-10
Identity = 47/107 (43.93%), Postives = 60/107 (56.07%), Query Frame = 1 

Query: 4   INLISAAAVLLVLASIFNNNISHTQGL--------RLLPMEQEHPAVH-------LNSSP 63
           I LIS    +L+L+S F+  +SHTQ          R+   +  HP +        L S P
Sbjct: 6   IKLISTFVAILILSSTFH--VSHTQARMPPTKNLDRVEISKDLHPKIEETVAVAPLKSEP 65

Query: 64  QSFHPSPIAAT-DVDVHGGDFRPTTPGHSPGAGHGLAPDSHVDSKIH 95
            +F       T + +V GGDFRPTTPGHSPGAGH +AP SH+DSKIH
Sbjct: 66  LAFDRDTFFTTSNAEVLGGDFRPTTPGHSPGAGHSVAPTSHMDSKIH 110

The following BLAST results are available for this feature:
BLAST of Cp4.1LG02g06940 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG02g06940 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L3I5_CUCSA5.6e-1043.93Uncharacterized protein OS=Cucumis sativus GN=Csa_4G639110 PE=4 SV=1[more]
BLAST of Cp4.1LG02g06940 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG02g06940 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700200014|gb|KGN55172.1|8.1e-1043.93hypothetical protein Csa_4G639110 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG02g06940.1Cp4.1LG02g06940.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG02g06940Cucsa.123520Cucumber (Gy14) v1cgycpeB0311
Cp4.1LG02g06940CmaCh01G018590Cucurbita maxima (Rimu)cmacpeB490
Cp4.1LG02g06940CmoCh09G002060Cucurbita moschata (Rifu)cmocpeB020
Cp4.1LG02g06940CmoCh01G019180Cucurbita moschata (Rifu)cmocpeB450
Cp4.1LG02g06940Cla020691Watermelon (97103) v1cpewmB559
Cp4.1LG02g06940Csa4G639110Cucumber (Chinese Long) v2cpecuB564
Cp4.1LG02g06940MELO3C016735Melon (DHL92) v3.5.1cpemeB538
Cp4.1LG02g06940ClCG05G019710Watermelon (Charleston Gray)cpewcgB509
Cp4.1LG02g06940CSPI04G23900Wild cucumber (PI 183967)cpecpiB566
Cp4.1LG02g06940CsaV3_4G034130Cucumber (Chinese Long) v3cpecucB0701
Cp4.1LG02g06940Bhi09G002754Wax gourdcpewgoB0725
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG02g06940Cp4.1LG06g01520Cucurbita pepo (Zucchini)cpecpeB459
The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG02g06940Wax gourdcpewgoB0684
Cp4.1LG02g06940Cucurbita pepo (Zucchini)cpecpeB090
Cp4.1LG02g06940Cucurbita pepo (Zucchini)cpecpeB125
Cp4.1LG02g06940Cucurbita pepo (Zucchini)cpecpeB264
Cp4.1LG02g06940Cucurbita pepo (Zucchini)cpecpeB414
Cp4.1LG02g06940Cucurbita pepo (Zucchini)cpecpeB471
Cp4.1LG02g06940Cucumber (Gy14) v1cgycpeB0221
Cp4.1LG02g06940Cucumber (Gy14) v1cgycpeB0612
Cp4.1LG02g06940Cucurbita maxima (Rimu)cmacpeB045
Cp4.1LG02g06940Cucurbita maxima (Rimu)cmacpeB679
Cp4.1LG02g06940Cucurbita maxima (Rimu)cmacpeB780
Cp4.1LG02g06940Cucurbita moschata (Rifu)cmocpeB166
Cp4.1LG02g06940Cucurbita moschata (Rifu)cmocpeB633
Cp4.1LG02g06940Cucurbita moschata (Rifu)cmocpeB734
Cp4.1LG02g06940Cucurbita moschata (Rifu)cmocpeB820
Cp4.1LG02g06940Wild cucumber (PI 183967)cpecpiB541
Cp4.1LG02g06940Wild cucumber (PI 183967)cpecpiB584
Cp4.1LG02g06940Cucumber (Chinese Long) v2cpecuB539
Cp4.1LG02g06940Cucumber (Chinese Long) v2cpecuB583
Cp4.1LG02g06940Bottle gourd (USVL1VR-Ls)cpelsiB454
Cp4.1LG02g06940Bottle gourd (USVL1VR-Ls)cpelsiB462
Cp4.1LG02g06940Bottle gourd (USVL1VR-Ls)cpelsiB477
Cp4.1LG02g06940Watermelon (Charleston Gray)cpewcgB528
Cp4.1LG02g06940Watermelon (97103) v1cpewmB541
Cp4.1LG02g06940Watermelon (97103) v1cpewmB576
Cp4.1LG02g06940Melon (DHL92) v3.5.1cpemeB508
Cp4.1LG02g06940Melon (DHL92) v3.5.1cpemeB548
Cp4.1LG02g06940Cucumber (Gy14) v2cgybcpeB224
Cp4.1LG02g06940Cucumber (Gy14) v2cgybcpeB539
Cp4.1LG02g06940Cucumber (Gy14) v2cgybcpeB820
Cp4.1LG02g06940Cucumber (Gy14) v2cgybcpeB955
Cp4.1LG02g06940Melon (DHL92) v3.6.1cpemedB605
Cp4.1LG02g06940Melon (DHL92) v3.6.1cpemedB637
Cp4.1LG02g06940Melon (DHL92) v3.6.1cpemedB638
Cp4.1LG02g06940Melon (DHL92) v3.6.1cpemedB648
Cp4.1LG02g06940Silver-seed gourdcarcpeB0153
Cp4.1LG02g06940Silver-seed gourdcarcpeB0265
Cp4.1LG02g06940Silver-seed gourdcarcpeB1082
Cp4.1LG02g06940Silver-seed gourdcarcpeB1136
Cp4.1LG02g06940Cucumber (Chinese Long) v3cpecucB0675
Cp4.1LG02g06940Cucumber (Chinese Long) v3cpecucB0714
Cp4.1LG02g06940Cucumber (Chinese Long) v3cpecucB0722
Cp4.1LG02g06940Cucumber (Chinese Long) v3cpecucB0736