ClCG05G019710 (gene) Watermelon (Charleston Gray)

Overview
NameClCG05G019710
Typegene
OrganismCitrullus lanatus (Watermelon (Charleston Gray))
DescriptionUnknown protein
LocationCG_Chr05 : 31952576 .. 31952911 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACTGCCATATTACTCAATCCCTTCCTCTCTATAGCGGCCGCCCTCCTCATTTTATCTTCCATCTCCAATATATCAAACACTGAAGCAAGATTGCTACCGATGAAGCATCCCGACGACGTCGATATTCCCAAAAATCTCCACCGCGAAATAGTAGAAACTGTCACGATTGCTCCTCTCAAGTCTGGGCCACCGGCATTTGATCACCACACTCCCTTAACTGCTAGCGACGCCGAGGTTCTAGGTGGCGACTTCCGTCCGACCACCCCGGGCCACAGCCCCGGAGCCGGTCACTCTCTTGCACCAGCCAGCCATATGGATTCCAAAATTCATTAG

mRNA sequence

ATGACTGCCATATTACTCAATCCCTTCCTCTCTATAGCGGCCGCCCTCCTCATTTTATCTTCCATCTCCAATATATCAAACACTGAAGCAAGATTGCTACCGATGAAGCATCCCGACGACGTCGATATTCCCAAAAATCTCCACCGCGAAATAGTAGAAACTGTCACGATTGCTCCTCTCAAGTCTGGGCCACCGGCATTTGATCACCACACTCCCTTAACTGCTAGCGACGCCGAGGTTCTAGGTGGCGACTTCCGTCCGACCACCCCGGGCCACAGCCCCGGAGCCGGTCACTCTCTTGCACCAGCCAGCCATATGGATTCCAAAATTCATTAG

Coding sequence (CDS)

ATGACTGCCATATTACTCAATCCCTTCCTCTCTATAGCGGCCGCCCTCCTCATTTTATCTTCCATCTCCAATATATCAAACACTGAAGCAAGATTGCTACCGATGAAGCATCCCGACGACGTCGATATTCCCAAAAATCTCCACCGCGAAATAGTAGAAACTGTCACGATTGCTCCTCTCAAGTCTGGGCCACCGGCATTTGATCACCACACTCCCTTAACTGCTAGCGACGCCGAGGTTCTAGGTGGCGACTTCCGTCCGACCACCCCGGGCCACAGCCCCGGAGCCGGTCACTCTCTTGCACCAGCCAGCCATATGGATTCCAAAATTCATTAG

Protein sequence

MTAILLNPFLSIAAALLILSSISNISNTEARLLPMKHPDDVDIPKNLHREIVETVTIAPLKSGPPAFDHHTPLTASDAEVLGGDFRPTTPGHSPGAGHSLAPASHMDSKIH
Homology
[Close]
BLAST of ClCG05G019710 vs. TrEMBL
Match: A0A0A0L3I5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G639110 PE=4 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 4.9e-29
Identity = 67/102 (65.69%), Postives = 81/102 (79.41%), Query Frame = 1 

Query: 10  LSIAAALLILSSISNISNTEARLLPMKHPDDVDIPKNLHREIVETVTIAPLKSGPPAFDH 69
           +S   A+LILSS  ++S+T+AR+ P K+ D V+I K+LH +I ETV +APLKS P AFD 
Sbjct: 9   ISTFVAILILSSTFHVSHTQARMPPTKNLDRVEISKDLHPKIEETVAVAPLKSEPLAFDR 68

Query: 70  HTPLTASDAEVLGGDFRPTTPGHSPGAGHSLAPASHMDSKIH 112
            T  T S+AEVLGGDFRPTTPGHSPGAGHS+AP SHMDSKIH
Sbjct: 69  DTFFTTSNAEVLGGDFRPTTPGHSPGAGHSVAPTSHMDSKIH 110

[Close]
BLAST of ClCG05G019710 vs. NCBI nr
Match: gi|700200014|gb|KGN55172.1| (hypothetical protein Csa_4G639110 [Cucumis sativus])

HSP 1 Score: 135.2 bits (339), Expect = 7.0e-29
Identity = 67/102 (65.69%), Postives = 81/102 (79.41%), Query Frame = 1 

Query: 10  LSIAAALLILSSISNISNTEARLLPMKHPDDVDIPKNLHREIVETVTIAPLKSGPPAFDH 69
           +S   A+LILSS  ++S+T+AR+ P K+ D V+I K+LH +I ETV +APLKS P AFD 
Sbjct: 9   ISTFVAILILSSTFHVSHTQARMPPTKNLDRVEISKDLHPKIEETVAVAPLKSEPLAFDR 68

Query: 70  HTPLTASDAEVLGGDFRPTTPGHSPGAGHSLAPASHMDSKIH 112
            T  T S+AEVLGGDFRPTTPGHSPGAGHS+AP SHMDSKIH
Sbjct: 69  DTFFTTSNAEVLGGDFRPTTPGHSPGAGHSVAPTSHMDSKIH 110

The following BLAST results are available for this feature:
BLAST of ClCG05G019710 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L3I5_CUCSA4.9e-2965.69Uncharacterized protein OS=Cucumis sativus GN=Csa_4G639110 PE=4 SV=1[more]
BLAST of ClCG05G019710 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700200014|gb|KGN55172.1|7.0e-2965.69hypothetical protein Csa_4G639110 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG05G019710.1ClCG05G019710.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
ClCG05G019710MELO3C016735Melon (DHL92) v3.5.1mewcgB480
ClCG05G019710Cla020691Watermelon (97103) v1wcgwmB285
ClCG05G019710Bhi09G002754Wax gourdwcgwgoB479
ClCG05G019710CmoCh01G019180Cucurbita moschata (Rifu)cmowcgB412
ClCG05G019710Cp4.1LG02g06940Cucurbita pepo (Zucchini)cpewcgB509
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
ClCG05G019710Cucumber (Chinese Long) v3cucwcgB150
ClCG05G019710Cucumber (Chinese Long) v3cucwcgB326
ClCG05G019710Watermelon (97103) v2wcgwmbB229
ClCG05G019710Watermelon (97103) v2wcgwmbB243
ClCG05G019710Wax gourdwcgwgoB452
ClCG05G019710Watermelon (Charleston Gray)wcgwcgB166
ClCG05G019710Cucumber (Gy14) v1cgywcgB194
ClCG05G019710Cucumber (Gy14) v1cgywcgB406
ClCG05G019710Cucurbita maxima (Rimu)cmawcgB021
ClCG05G019710Cucurbita maxima (Rimu)cmawcgB160
ClCG05G019710Cucurbita maxima (Rimu)cmawcgB411
ClCG05G019710Cucurbita moschata (Rifu)cmowcgB015
ClCG05G019710Cucurbita moschata (Rifu)cmowcgB149
ClCG05G019710Wild cucumber (PI 183967)cpiwcgB144
ClCG05G019710Wild cucumber (PI 183967)cpiwcgB327
ClCG05G019710Cucumber (Chinese Long) v2cuwcgB140
ClCG05G019710Cucumber (Chinese Long) v2cuwcgB310
ClCG05G019710Melon (DHL92) v3.5.1mewcgB287
ClCG05G019710Watermelon (97103) v1wcgwmB273
ClCG05G019710Cucurbita pepo (Zucchini)cpewcgB700
ClCG05G019710Cucurbita pepo (Zucchini)cpewcgB738
ClCG05G019710Bottle gourd (USVL1VR-Ls)lsiwcgB287
ClCG05G019710Bottle gourd (USVL1VR-Ls)lsiwcgB431
ClCG05G019710Cucumber (Gy14) v2cgybwcgB131
ClCG05G019710Cucumber (Gy14) v2cgybwcgB290
ClCG05G019710Melon (DHL92) v3.6.1medwcgB278
ClCG05G019710Melon (DHL92) v3.6.1medwcgB474
ClCG05G019710Silver-seed gourdcarwcgB0104
ClCG05G019710Silver-seed gourdcarwcgB0748