Cp4.1LG06g01520 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG06g01520
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionUnknown protein
LocationCp4.1LG06 : 800646 .. 800957 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACTGTAATCAATTCCATCCATATCGCCTTCCTCATTTTATCTTCCATTTGCAATATATCACACACCCATGGAAGGCTGCTGCCCATGGAGCATCCCGTCGTCGGAAATCTTCGCCGCAAAATCGTTGAAACTGCCGGTGTTGCTCCTCTCGGGACGAGGCCACCGGCATTTCAACACAATACCTCCTCTCCTGGCGACGGCGACGCCGAGGTGCTAGGCGGCGACTTCCGTCCGACCACCCCGGGCCACAGTCCTGGAGTCGGCCACTCTCTTGCACCAGCAAGCCACGTGGAGTCGAAAATCCATTAG

mRNA sequence

ATGACTGTAATCAATTCCATCCATATCGCCTTCCTCATTTTATCTTCCATTTGCAATATATCACACACCCATGGAAGGCTGCTGCCCATGGAGCATCCCGTCGTCGGAAATCTTCGCCGCAAAATCGTTGAAACTGCCGGTGTTGCTCCTCTCGGGACGAGGCCACCGGCATTTCAACACAATACCTCCTCTCCTGGCGACGGCGACGCCGAGGTGCTAGGCGGCGACTTCCGTCCGACCACCCCGGGCCACAGTCCTGGAGTCGGCCACTCTCTTGCACCAGCAAGCCACGTGGAGTCGAAAATCCATTAG

Coding sequence (CDS)

ATGACTGTAATCAATTCCATCCATATCGCCTTCCTCATTTTATCTTCCATTTGCAATATATCACACACCCATGGAAGGCTGCTGCCCATGGAGCATCCCGTCGTCGGAAATCTTCGCCGCAAAATCGTTGAAACTGCCGGTGTTGCTCCTCTCGGGACGAGGCCACCGGCATTTCAACACAATACCTCCTCTCCTGGCGACGGCGACGCCGAGGTGCTAGGCGGCGACTTCCGTCCGACCACCCCGGGCCACAGTCCTGGAGTCGGCCACTCTCTTGCACCAGCAAGCCACGTGGAGTCGAAAATCCATTAG

Protein sequence

MTVINSIHIAFLILSSICNISHTHGRLLPMEHPVVGNLRRKIVETAGVAPLGTRPPAFQHNTSSPGDGDAEVLGGDFRPTTPGHSPGVGHSLAPASHVESKIH
Homology
[Close]
BLAST of Cp4.1LG06g01520 vs. TrEMBL
Match: A0A0A0L3I5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G639110 PE=4 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 3.6e-18
Identity = 54/102 (52.94%), Postives = 68/102 (66.67%), Query Frame = 1 

Query: 6   SIHIAFLILSSICNISHTHGRLLPMEH----PVVGNLRRKIVETAGVAPLGTRPPAFQHN 65
           S  +A LILSS  ++SHT  R+ P ++     +  +L  KI ET  VAPL + P AF  +
Sbjct: 10  STFVAILILSSTFHVSHTQARMPPTKNLDRVEISKDLHPKIEETVAVAPLKSEPLAFDRD 69

Query: 66  TSSPGDGDAEVLGGDFRPTTPGHSPGVGHSLAPASHVESKIH 104
           T      +AEVLGGDFRPTTPGHSPG GHS+AP SH++SKIH
Sbjct: 70  TFFT-TSNAEVLGGDFRPTTPGHSPGAGHSVAPTSHMDSKIH 110

[Close]
BLAST of Cp4.1LG06g01520 vs. NCBI nr
Match: gi|700200014|gb|KGN55172.1| (hypothetical protein Csa_4G639110 [Cucumis sativus])

HSP 1 Score: 99.0 bits (245), Expect = 5.2e-18
Identity = 54/102 (52.94%), Postives = 68/102 (66.67%), Query Frame = 1 

Query: 6   SIHIAFLILSSICNISHTHGRLLPMEH----PVVGNLRRKIVETAGVAPLGTRPPAFQHN 65
           S  +A LILSS  ++SHT  R+ P ++     +  +L  KI ET  VAPL + P AF  +
Sbjct: 10  STFVAILILSSTFHVSHTQARMPPTKNLDRVEISKDLHPKIEETVAVAPLKSEPLAFDRD 69

Query: 66  TSSPGDGDAEVLGGDFRPTTPGHSPGVGHSLAPASHVESKIH 104
           T      +AEVLGGDFRPTTPGHSPG GHS+AP SH++SKIH
Sbjct: 70  TFFT-TSNAEVLGGDFRPTTPGHSPGAGHSVAPTSHMDSKIH 110

The following BLAST results are available for this feature:
BLAST of Cp4.1LG06g01520 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG06g01520 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L3I5_CUCSA3.6e-1852.94Uncharacterized protein OS=Cucumis sativus GN=Csa_4G639110 PE=4 SV=1[more]
BLAST of Cp4.1LG06g01520 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG06g01520 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700200014|gb|KGN55172.1|5.2e-1852.94hypothetical protein Csa_4G639110 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG06g01520.1Cp4.1LG06g01520.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG06g01520Cucsa.123520Cucumber (Gy14) v1cgycpeB0313
Cp4.1LG06g01520CmaCh01G018590Cucurbita maxima (Rimu)cmacpeB507
Cp4.1LG06g01520CmoCh09G002060Cucurbita moschata (Rifu)cmocpeB034
Cp4.1LG06g01520CmoCh01G019180Cucurbita moschata (Rifu)cmocpeB465
Cp4.1LG06g01520Cla020691Watermelon (97103) v1cpewmB765
Cp4.1LG06g01520Csa4G639110Cucumber (Chinese Long) v2cpecuB782
Cp4.1LG06g01520MELO3C016735Melon (DHL92) v3.5.1cpemeB734
Cp4.1LG06g01520CSPI04G23900Wild cucumber (PI 183967)cpecpiB784
Cp4.1LG06g01520CsaV3_4G034130Cucumber (Chinese Long) v3cpecucB0969
Cp4.1LG06g01520Bhi09G002754Wax gourdcpewgoB0997
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG06g01520Cp4.1LG02g06940Cucurbita pepo (Zucchini)cpecpeB459
The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG06g01520Cucumber (Chinese Long) v3cpecucB0957
Cp4.1LG06g01520Cucumber (Chinese Long) v3cpecucB0977
Cp4.1LG06g01520Cucumber (Chinese Long) v3cpecucB0982
Cp4.1LG06g01520Wax gourdcpewgoB0976
Cp4.1LG06g01520Cucurbita pepo (Zucchini)cpecpeB099
Cp4.1LG06g01520Cucurbita pepo (Zucchini)cpecpeB136
Cp4.1LG06g01520Cucurbita pepo (Zucchini)cpecpeB422
Cp4.1LG06g01520Cucurbita pepo (Zucchini)cpecpeB510
Cp4.1LG06g01520Cucumber (Gy14) v1cgycpeB0613
Cp4.1LG06g01520Cucurbita maxima (Rimu)cmacpeB060
Cp4.1LG06g01520Cucurbita maxima (Rimu)cmacpeB684
Cp4.1LG06g01520Cucurbita maxima (Rimu)cmacpeB787
Cp4.1LG06g01520Cucurbita maxima (Rimu)cmacpeB888
Cp4.1LG06g01520Cucurbita moschata (Rifu)cmocpeB172
Cp4.1LG06g01520Cucurbita moschata (Rifu)cmocpeB637
Cp4.1LG06g01520Cucurbita moschata (Rifu)cmocpeB740
Cp4.1LG06g01520Cucurbita moschata (Rifu)cmocpeB827
Cp4.1LG06g01520Wild cucumber (PI 183967)cpecpiB773
Cp4.1LG06g01520Cucumber (Chinese Long) v2cpecuB771
Cp4.1LG06g01520Bottle gourd (USVL1VR-Ls)cpelsiB638
Cp4.1LG06g01520Bottle gourd (USVL1VR-Ls)cpelsiB644
Cp4.1LG06g01520Watermelon (Charleston Gray)cpewcgB700
Cp4.1LG06g01520Watermelon (Charleston Gray)cpewcgB708
Cp4.1LG06g01520Watermelon (97103) v1cpewmB756
Cp4.1LG06g01520Watermelon (97103) v1cpewmB772
Cp4.1LG06g01520Melon (DHL92) v3.5.1cpemeB717
Cp4.1LG06g01520Cucumber (Gy14) v2cgybcpeB254
Cp4.1LG06g01520Cucumber (Gy14) v2cgybcpeB562
Cp4.1LG06g01520Cucumber (Gy14) v2cgybcpeB868
Cp4.1LG06g01520Melon (DHL92) v3.6.1cpemedB852
Cp4.1LG06g01520Melon (DHL92) v3.6.1cpemedB866
Cp4.1LG06g01520Melon (DHL92) v3.6.1cpemedB867
Cp4.1LG06g01520Melon (DHL92) v3.6.1cpemedB873
Cp4.1LG06g01520Silver-seed gourdcarcpeB0154
Cp4.1LG06g01520Silver-seed gourdcarcpeB0267
Cp4.1LG06g01520Silver-seed gourdcarcpeB0570
Cp4.1LG06g01520Silver-seed gourdcarcpeB1083
Cp4.1LG06g01520Silver-seed gourdcarcpeB1140