CmoCh01G013540 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh01G013540
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	SNARE-associated-like protein
Location	Cmo_Chr01 : 10697561 .. 10701497 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGGTTAATCTCGCGGAATTTTTCATATCACGGAGTTACGGCCTCAAATTTGTTTTTGAAAAAATCGAGTGATCTCGGTTCAAGAATTCCAGAAATCGAGCATTTCGTTCGTCGTGCATTGTGTTAATTGTTCCAATATTATCGTAGCATTTGGTGTCGATTTTTCTTCTTCCAGACATCTCTTAATATTGTCAGTTTCTTGCTTCATTGATCACTTTTCTTGAGGCAAAATTACAGCAGAGTAATTGTTTGTTGCTCGGCATTGACTAGTTTCTGTTCTGGTCTTTAATATTTCGCGATTGAAACTGCATATTAGTTCCGTTTCAATTGTAGTAGCTGCGATCTTAACTTTATGGTGTTTCTAGACACTTATTAGATGCTGAAATCGTGGAAGCTATTTTCATTTTATCTTTGTTGTCTCACATTATTGACGCACTATACTGGTAGCTAACGAACTTACAGATGGGCGATTTTCACTGTGAATAATGAACTTGGTGATCTCTTTCAGAAATTGCAAGGGATGCACAGTCTGGAGAAAGTGCACGATGATTCTGCCAACAAGGACAGCAAAGTCTCTGCTGAATTGGAGCCTTCTATTAGTCCAAATGGTGATATCGAGGAAGAAAATGATATTGCAAATATGAATTTGGGAGACTCTAATGCTCTAGCAAATGGGCTCTCTTCCATGCTTATGAACATCATGAGGGATTTTGACTCCAAAGCTGATGATACTCTTAAAAGCCAAAGCCAGCTTTCATTTTCCCTTGACCGACTTACTTCAGGTATGATTACATTTACTTTGTTTTATTAGTTTTATCATATGAAATAGAATTTCTTCCTTTGTCCAATAATATAGTTCAGGGGAAGTGTATAGGTAAATGATATTCTCTCATAATTTACCTTTTTTCTTGTCATAGATGCAAAAATGAAGCTTCTGAGTTACATGGTTTTTTCAATGGTATAAAAAGATATTATTTTAACTTTTAACAGAACTGGATCAATTACTTGAAGATGCTCCTTTTCCATTCATCATGCAGCATGCCTTGAGGATTTCTAGTGTAAGAAAGAGAGTGTTGTCTCTAAATTCCATCTTAAGATCCGTACAACGAAGAGTAGATAACATAGATCGGGTGATCTCGATGAGTAATTTACCAGGTGATTGACTTCTCCCTTCAAGGGCCTCAATTTTGTTGTCTTTTATGGCTTTTAATTTAATGGAAACTTATTGAATAATATCATTGGCTGTCGAGGCTTGTTCAATAAAGGTCCTTATTCTCTCCATTCTATTGGAGAAGGAAAGGTGTTATTCCCATAAAATAATGACAAGAAGAACCAAGGGCAACTCAAAACTTCAATAAAGATCCTTGTTCCTGGCATTCCCTATATAATTCTTTTTGCAGTTATGTGGGCTATTTTTGTTAGCTCCTAATTGTCAGATTTTATACGCAACTTTTCACTACATTATTTATTGAACTGTGTGGAATCAATATATTCATTTGAAAACCTCTGTTGTGACTTCTTATGGAAGATTTAAAACTTTCCCCTTAACATGTTGCACAAAGAGGATTTAGTGACGATTTTAAACCTACAAATAAGGATCTTTTACTTTTGAATAAGAGGTGGAATTGAGGTATCGATTGCAAAACCTCAGCTGTTCCTTCTCTCAGTGCCTCATTCGAATATCATATGATTTTTTTTTTTTTTTTTTTGTACACATGCATTTGGATTTGTACCTAATGTGGCTCTGCCCACCAATTCTGGCATGTTTCTTCGTTGAATGAGACCAACGTTTTAGTTTTTGAAAATTCTAGGCTAAGAATCTATTCTCTCGTTCAAACATAGTGCCATGATTTTTTTAAAGCCATGCCTCTGAGGTCATAAATCATGATTTTGTTTTGCTTTCTGAATTGCATTTGGTGATGCATCCATGGGACAAATCATTTTGCTTCCTTACAGAATAGTCTTGATCTTGACAACTTGATTTCTTTCTTTATTGTGCTTCTTTTTTCAAATGTTGATGACACATACTTTCCATGAGATGCTGTAATAAAATTCACTTATTATAAGTAAGTTTTTGTAATTGAATTTCCTTTAGTTTCCAGACATTCGAATATCTATGTATGTAGGTTTTCTTCTGGGAACAAGAAACAAGTACGTAGGATGTTGAAATTTCACATATATTCACCCCCGGGTAATTTCCATAATAGCTGAAGTAAAAATACTTGTAGTGCTTTCTACCTTATCCTTTCTTGAATGTACTTGTCTGTCCCCTGCCTGTGCTATTATCTCTCACAGTCTGACAACCTTTCTCTTGTCCCTCTCTCTGAAGCTCTGGAGACGGAAGAAGAGAGAGAGAGAGAGAGAAATAGGGAGTAGCACCAAAACAGATGGAAGTTGACTGGTGGAGGGCAGTAGGGTTTGACAATGGGGAAAAAGATTGATTTTGGAACTTAGTCGAGGAAATATGGTATTTACATTTTTAAAATGCTGTATATGAAGAATGAAGTAAAATTTTGAAGTGACTCCAAATGGAAGTTTTATGTATGAACTCCCATAATGTCACGAGATACTTAAGGTCCTAGTGGACTATTTAAGAGATATTACTCTACTAGAATATCAGTGCCTTTGTATTTGTGTGTCTGGGTCACCTTGCGTGTATCTTGACTAATCTCATGGCACAACCATCTGACCGTACTACACTTGGTTGCCAAGGAAACTCTTAAGATGTTAAATGCTAGGTAGATGACTACCATGATCGTAACTATATATATATATATATATTCTCTCTTCTCTCTTTTCTTTTCTTGAAGGGGTGGACATGAAGCGGTGTGCCAGCAAGGACGTTGGGCCTTGATTGGAGAAGGGGGTGGATTGGGAGGGTCCCACATCGGTTGGAGAAGGGAACGAGTGTCAGCGAGGACGCTGGGCCCTGAAGGGGGGTGGATTGTGAGATCCCATATCGGTTGGGGAGGAGAACGAAACACCCTTTATAAGAGTGTGGAAACCTCTCTTTAGCGGACACGTTTTAAAAACTTTGAGGGAAAGCCTATAAGAGAAAGCTCAAAAAGGATAATATCTGCTAGTGGTGGGCTTGGGCTATTACACCTTCCCTTCCCTTCTCATCTCATTACTTCGCTTCTCATCTCATTACGTTGTGTGATATAAGTTCTAGCTTCATTGGCACAGCTCGCACGGATTACCCTAGAATGAAAAGTGCTCCTTCAGATTGGTGTCTCATAATTTGGATCCTCACTTTATAGACGAATTGCTTGTTTTCTGATTGACAGTCGTCCACAACCAGTGGGGGGAGTAGGCATTCATTTTGTGGCTCATTTGGCTGATTGTCTATGCGTTAACATTGCAATATATTTATTATTTATTTCCTTGTATCATTGTCACTAAAATATGCCTGTTCTCTACAGATATTCGTTCCTCTCAAAGTTCCTCGCAACCTCATAATGGTTGATCAAGTCGGGAATTCCAACTATTTGTTTAATTGATACAAATTGGGACTCGGATCTCTCAGATATTATGATGATTGTACGTATCTGCTGTCCCTTTTGTGTATTCATTTTGACTACTATGCTTGGAAATACTGTGATAGAAAAACTATTTGTGAGTATGAGTCCTGTTTCTGAAATCAGGTGGTTCTTGCAGATTATTTTAACCTGTAAGTTGCTGTGTTCTGTTTTGTTTTTAAGAGAGTTTATTAAAATAAGAATTTTCAAATGATCGAGTCATAATAAAGTGATTTAAATGAAATAATTTTAAGCTACGATGGTTACACGAGTTTTCTTGATAATCTAATGTCGTAGAGTTATACTACACGGTTGTCTTGTGAGATCAGCTTAAGTGTATTCAGGCTATCAGTTGAAAAAAAATTCCCATTTCCTATTTTAGTTGATTAAAAAAAACTTTATTAGAAATACCAAGT

mRNA sequence

ATGGAGAAATTGCAAGGGATGCACAGTCTGGAGAAAGTGCACGATGATTCTGCCAACAAGGACAGCAAAGTCTCTGCTGAATTGGAGCCTTCTATTAGTCCAAATGGTGATATCGAGGAAGAAAATGATATTGCAAATATGAATTTGGGAGACTCTAATGCTCTAGCAAATGGGCTCTCTTCCATGCTTATGAACATCATGAGGGATTTTGACTCCAAAGCTGATGATACTCTTAAAAGCCAAAGCCAGCTTTCATTTTCCCTTGACCGACTTACTTCAGTTTTATCATATGAAATAGAATTTCTTCCTTTGTCCAATAATATAGTTCAGGGGAAGTGTATAGAACTGGATCAATTACTTGAAGATGCTCCTTTTCCATTCATCATGCAGCATGCCTTGAGGATTTCTAGTGTAAGAAAGAGAGTGTTGTCTCTAAATTCCATCTTAAGATCCGTACAACGAAGAGTAGATAACATAGATCGGATATTCGTTCCTCTCAAAGTTCCTCGCAACCTCATAATGGTTGATCAAGTCGGGAATTCCAACTATTTGTTTAATTGATACAAATTGGGACTCGGATCTCTCAGATATTATGATGATTGTACGTATCTGCTGTCCCTTTTGTGTATTCATTTTGACTACTATGCTTGGAAATACTGTGATAGAAAAACTATTTGTGAGTATGAGTCCTGTTTCTGAAATCAGGTGGTTCTTGCAGATTATTTTAACCTGTAAGTTGCTGTGTTCTGTTTTGTTTTTAAGAGAGTTTATTAAAATAAGAATTTTCAAATGATCGAGTCATAATAAAGTGATTTAAATGAAATAATTTTAAGCTACGATGGTTACACGAGTTTTCTTGATAATCTAATGTCGTAGAGTTATACTACACGGTTGTCTTGTGAGATCAGCTTAAGTGTATTCAGGCTATCAGTTGAAAAAAAATTCCCATTTCCTATTTTAGTTGATTAAAAAAAACTTTATTAGAAATACCAAGT

Coding sequence (CDS)

ATGGAGAAATTGCAAGGGATGCACAGTCTGGAGAAAGTGCACGATGATTCTGCCAACAAGGACAGCAAAGTCTCTGCTGAATTGGAGCCTTCTATTAGTCCAAATGGTGATATCGAGGAAGAAAATGATATTGCAAATATGAATTTGGGAGACTCTAATGCTCTAGCAAATGGGCTCTCTTCCATGCTTATGAACATCATGAGGGATTTTGACTCCAAAGCTGATGATACTCTTAAAAGCCAAAGCCAGCTTTCATTTTCCCTTGACCGACTTACTTCAGTTTTATCATATGAAATAGAATTTCTTCCTTTGTCCAATAATATAGTTCAGGGGAAGTGTATAGAACTGGATCAATTACTTGAAGATGCTCCTTTTCCATTCATCATGCAGCATGCCTTGAGGATTTCTAGTGTAAGAAAGAGAGTGTTGTCTCTAAATTCCATCTTAAGATCCGTACAACGAAGAGTAGATAACATAGATCGGATATTCGTTCCTCTCAAAGTTCCTCGCAACCTCATAATGGTTGATCAAGTCGGGAATTCCAACTATTTGTTTAATTGA

Homology

[Close]

BLAST of CmoCh01G013540 vs. TrEMBL
Match: A0A0A0L459_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G598520 PE=4 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 2.1e-32
Identity = 88/133 (66.17%), Postives = 99/133 (74.44%), Query Frame = 1


Query: 7   MHSLEKVHDD-SANKDSKVSAELEPSISPNGDIEEENDIANMNLGDSNALANGLSSMLMN 66
           MHS EK+ DD SAN+DS VSAELE SI+ NGD++E ND  N NLG+SNALANGLSSML+N
Sbjct: 1   MHSPEKLDDDYSANEDSNVSAELETSITLNGDLQEGNDSENKNLGNSNALANGLSSMLIN 60

Query: 67  IMRDFDSKADDTLKSQSQLSFSLDRLTSVLSYEIEFLPLSNNIVQGKCIELDQLLEDAPF 126
           I+RDFDSKADDTLKSQ+ LS SLDRLT+                     ELDQLLEDAPF
Sbjct: 61  IIRDFDSKADDTLKSQNHLSSSLDRLTT---------------------ELDQLLEDAPF 112

Query: 127 PFIMQHALRISSV 139
           PFIMQHA RIS+V
Sbjct: 121 PFIMQHASRISNV 112

[Close]

BLAST of CmoCh01G013540 vs. TrEMBL
Match: A0A067JMC1_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22666 PE=4 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 8.0e-24
Identity = 76/158 (48.10%), Postives = 100/158 (63.29%), Query Frame = 1


Query: 16  DSANKDSK-VSAELEPSISPNG-----DIEEENDIANMNLGD-----SNALANGLSSMLM 75
           DS ++ S  +S E E ++S NG     +I  +   +  N  D     S+ALA GLS+ML 
Sbjct: 9   DSTDQSSVCISVEAERTVSSNGNKDSNEINSQEHKSKTNTEDEINKSSDALAKGLSTMLA 68

Query: 76  NIMRDFDSKADDTLKSQSQLSFSLDRLTSVLSYEIEFLPLSNNIVQGKCIELDQLLEDAP 135
           N++RDFDSKA +TLKSQ QL+ ++DRLT                      ELDQLLEDAP
Sbjct: 69  NVIRDFDSKAQETLKSQDQLNSAIDRLTR---------------------ELDQLLEDAP 128

Query: 136 FPFIMQHALRISSVRKRVLSLNSILRSVQRRVDNIDRI 163
            PFIMQHA +IS V+KRV SLNS+L+S+QRR+DN+DR+
Sbjct: 129 LPFIMQHAAKISGVKKRVSSLNSLLKSIQRRIDNMDRM 145

[Close]

BLAST of CmoCh01G013540 vs. TrEMBL
Match: A0A061GSM6_THECC (SNARE-associated protein-related isoform 3 (Fragment) OS=Theobroma cacao GN=TCM_040872 PE=4 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 1.8e-23
Identity = 80/161 (49.69%), Postives = 99/161 (61.49%), Query Frame = 1


Query: 3   KLQGMHSLEKVHDDSANKDSKVSAELEPS-ISPNGDIEEENDIANMNLGDSNALANGLSS 62
           K Q M S     DD+A   S VS E+ PS  SP  D +  ND ++ +   + ALA  LSS
Sbjct: 32  KTQKMESKGSNDDDNATI-SDVSVEVNPSNSSPTPDSQSNNDPSDND--STEALAKALSS 91

Query: 63  MLMNIMRDFDSKADDTLKSQSQLSFSLDRLTSVLSYEIEFLPLSNNIVQGKCIELDQLLE 122
           ML ++++DFDSKA DTL SQ  LS S+DRLT                      ELDQLLE
Sbjct: 92  MLTSLIKDFDSKAHDTLTSQDLLSSSIDRLTR---------------------ELDQLLE 151

Query: 123 DAPFPFIMQHALRISSVRKRVLSLNSILRSVQRRVDNIDRI 163
           DAP PFIMQHA + S+VRKRV SLN +L+S+QRR+DNIDR+
Sbjct: 152 DAPLPFIMQHAAKFSNVRKRVFSLNLLLKSIQRRIDNIDRM 168

[Close]

BLAST of CmoCh01G013540 vs. TrEMBL
Match: A0A061GTL6_THECC (SNARE-associated protein-related isoform 4 (Fragment) OS=Theobroma cacao GN=TCM_040872 PE=4 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 5.2e-23
Identity = 75/150 (50.00%), Postives = 94/150 (62.67%), Query Frame = 1


Query: 14  HDDSANKDSKVSAELEPS-ISPNGDIEEENDIANMNLGDSNALANGLSSMLMNIMRDFDS 73
           +DD     S VS E+ PS  SP  D +  ND ++ +   + ALA  LSSML ++++DFDS
Sbjct: 7   NDDDNATISDVSVEVNPSNSSPTPDSQSNNDPSDND--STEALAKALSSMLTSLIKDFDS 66

Query: 74  KADDTLKSQSQLSFSLDRLTSVLSYEIEFLPLSNNIVQGKCIELDQLLEDAPFPFIMQHA 133
           KA DTL SQ  LS S+DRLT                      ELDQLLEDAP PFIMQHA
Sbjct: 67  KAHDTLTSQDLLSSSIDRLTR---------------------ELDQLLEDAPLPFIMQHA 126

Query: 134 LRISSVRKRVLSLNSILRSVQRRVDNIDRI 163
            + S+VRKRV SLN +L+S+QRR+DNIDR+
Sbjct: 127 AKFSNVRKRVFSLNLLLKSIQRRIDNIDRM 133

[Close]

BLAST of CmoCh01G013540 vs. TrEMBL
Match: A0A061GTW3_THECC (SNARE-associated protein-related isoform 1 OS=Theobroma cacao GN=TCM_040872 PE=4 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 5.2e-23
Identity = 75/150 (50.00%), Postives = 94/150 (62.67%), Query Frame = 1


Query: 14  HDDSANKDSKVSAELEPS-ISPNGDIEEENDIANMNLGDSNALANGLSSMLMNIMRDFDS 73
           +DD     S VS E+ PS  SP  D +  ND ++ +   + ALA  LSSML ++++DFDS
Sbjct: 7   NDDDNATISDVSVEVNPSNSSPTPDSQSNNDPSDND--STEALAKALSSMLTSLIKDFDS 66

Query: 74  KADDTLKSQSQLSFSLDRLTSVLSYEIEFLPLSNNIVQGKCIELDQLLEDAPFPFIMQHA 133
           KA DTL SQ  LS S+DRLT                      ELDQLLEDAP PFIMQHA
Sbjct: 67  KAHDTLTSQDLLSSSIDRLTR---------------------ELDQLLEDAPLPFIMQHA 126

Query: 134 LRISSVRKRVLSLNSILRSVQRRVDNIDRI 163
            + S+VRKRV SLN +L+S+QRR+DNIDR+
Sbjct: 127 AKFSNVRKRVFSLNLLLKSIQRRIDNIDRM 133

[Close]

BLAST of CmoCh01G013540 vs. TAIR10
Match: AT1G79070.1 (AT1G79070.1 SNARE-associated protein-related)

HSP 1 Score: 105.1 bits (261), Expect = 4.6e-23
Identity = 61/113 (53.98%), Postives = 76/113 (67.26%), Query Frame = 1


Query: 50  GDSNALANGLSSMLMNIMRDFDSKADDTLKSQSQLSFSLDRLTSVLSYEIEFLPLSNNIV 109
           G   A+A GLS+ML ++++DFDSKA DTL SQ +LS SLDRL                  
Sbjct: 32  GGGEAMARGLSAMLESVIKDFDSKALDTLNSQDELSGSLDRLVQ---------------- 91

Query: 110 QGKCIELDQLLEDAPFPFIMQHALRISSVRKRVLSLNSILRSVQRRVDNIDRI 163
                ELDQLLE+AP PFI+QHA RISSV++RV SLN +L+SVQRR+DNID +
Sbjct: 92  -----ELDQLLENAPLPFIVQHASRISSVKQRVSSLNLVLKSVQRRIDNIDHM 123

[Close]

BLAST of CmoCh01G013540 vs. NCBI nr
Match: gi|449453794|ref|XP_004144641.1| (PREDICTED: uncharacterized protein LOC101218072 [Cucumis sativus])

HSP 1 Score: 185.3 bits (469), Expect = 9.9e-44
Identity = 109/164 (66.46%), Postives = 124/164 (75.61%), Query Frame = 1


Query: 7   MHSLEKVHDD-SANKDSKVSAELEPSISPNGDIEEENDIANMNLGDSNALANGLSSMLMN 66
           MHS EK+ DD SAN+DS VSAELE SI+ NGD++E ND  N NLG+SNALANGLSSML+N
Sbjct: 1   MHSPEKLDDDYSANEDSNVSAELETSITLNGDLQEGNDSENKNLGNSNALANGLSSMLIN 60

Query: 67  IMRDFDSKADDTLKSQSQLSFSLDRLTSVLSYEIEFLPLSNNIVQGKCIELDQLLEDAPF 126
           I+RDFDSKADDTLKSQ+ LS SLDRLT+                     ELDQLLEDAPF
Sbjct: 61  IIRDFDSKADDTLKSQNHLSSSLDRLTT---------------------ELDQLLEDAPF 120

Query: 127 PFIMQHALRISSVRKRVLSLNSILRSVQRRVDNIDRIFVPLKVP 170
           PFIMQHA RIS+VRKRVLSLNSILR++QRR+DNIDR      +P
Sbjct: 121 PFIMQHASRISNVRKRVLSLNSILRTIQRRMDNIDRAITMGNLP 143

[Close]

BLAST of CmoCh01G013540 vs. NCBI nr
Match: gi|659087126|ref|XP_008444284.1| (PREDICTED: uncharacterized protein LOC103487651 [Cucumis melo])

HSP 1 Score: 185.3 bits (469), Expect = 9.9e-44
Identity = 110/164 (67.07%), Postives = 123/164 (75.00%), Query Frame = 1


Query: 7   MHSLEKVHDD-SANKDSKVSAELEPSISPNGDIEEENDIANMNLGDSNALANGLSSMLMN 66
           MH  EK+ DD SAN+DS VSAELE SISP GD++E ND  N NLG+SNALANGLSSML+N
Sbjct: 1   MHRPEKLDDDYSANEDSNVSAELETSISPIGDLQEGNDGENKNLGNSNALANGLSSMLIN 60

Query: 67  IMRDFDSKADDTLKSQSQLSFSLDRLTSVLSYEIEFLPLSNNIVQGKCIELDQLLEDAPF 126
           I+RDFDSKADDTLKSQ+ LS SLDRLT+                     ELDQLLEDAPF
Sbjct: 61  IIRDFDSKADDTLKSQNHLSSSLDRLTT---------------------ELDQLLEDAPF 120

Query: 127 PFIMQHALRISSVRKRVLSLNSILRSVQRRVDNIDRIFVPLKVP 170
           PFIMQHA RIS+VRKRVLSLNSILR++QRRVDNIDR      +P
Sbjct: 121 PFIMQHASRISNVRKRVLSLNSILRTIQRRVDNIDRAITMGNLP 143

[Close]

BLAST of CmoCh01G013540 vs. NCBI nr
Match: gi|700199763|gb|KGN54921.1| (hypothetical protein Csa_4G598520 [Cucumis sativus])

HSP 1 Score: 147.1 bits (370), Expect = 3.0e-32
Identity = 88/133 (66.17%), Postives = 99/133 (74.44%), Query Frame = 1


Query: 7   MHSLEKVHDD-SANKDSKVSAELEPSISPNGDIEEENDIANMNLGDSNALANGLSSMLMN 66
           MHS EK+ DD SAN+DS VSAELE SI+ NGD++E ND  N NLG+SNALANGLSSML+N
Sbjct: 1   MHSPEKLDDDYSANEDSNVSAELETSITLNGDLQEGNDSENKNLGNSNALANGLSSMLIN 60

Query: 67  IMRDFDSKADDTLKSQSQLSFSLDRLTSVLSYEIEFLPLSNNIVQGKCIELDQLLEDAPF 126
           I+RDFDSKADDTLKSQ+ LS SLDRLT+                     ELDQLLEDAPF
Sbjct: 61  IIRDFDSKADDTLKSQNHLSSSLDRLTT---------------------ELDQLLEDAPF 112

Query: 127 PFIMQHALRISSV 139
           PFIMQHA RIS+V
Sbjct: 121 PFIMQHASRISNV 112

[Close]

BLAST of CmoCh01G013540 vs. NCBI nr
Match: gi|1009172926|ref|XP_015867538.1| (PREDICTED: uncharacterized protein LOC107405047 isoform X2 [Ziziphus jujuba])

HSP 1 Score: 124.4 bits (311), Expect = 2.1e-25
Identity = 79/158 (50.00%), Postives = 103/158 (65.19%), Query Frame = 1


Query: 14  HDDSANKDSK-VSAELEPSISPNGDIEEE--NDIANMNLGDSNALANGLSSMLMNIMRDF 73
           H +SA + S+ V+   EP+ +P     +   N+ AN+N G S+ALA GLSSML  ++RDF
Sbjct: 7   HCESAEESSQSVTLNSEPNANPQSSESDTSTNNAANIN-GGSDALAKGLSSMLTTVIRDF 66

Query: 74  DSKADDTLKSQSQLSFSLDRLTSVLSYEIEFLPLSNNIVQGKCIELDQLLEDAPFPFIMQ 133
           DSKA DT+ SQ +LSF+LDRL+                      ELDQLLEDAP PF+MQ
Sbjct: 67  DSKAQDTVGSQERLSFALDRLSR---------------------ELDQLLEDAPLPFVMQ 126

Query: 134 HALRISSVRKRVLSLNSILRSVQRRVDNIDRIFVPLKV 169
           HA RIS VRKRV SLNS+L+S+QRR+DN+DR+    K+
Sbjct: 127 HAARISVVRKRVSSLNSVLKSIQRRLDNMDRMLFASKL 142

[Close]

BLAST of CmoCh01G013540 vs. NCBI nr
Match: gi|1009172924|ref|XP_015867537.1| (PREDICTED: uncharacterized protein LOC107405047 isoform X1 [Ziziphus jujuba])

HSP 1 Score: 124.4 bits (311), Expect = 2.1e-25
Identity = 79/158 (50.00%), Postives = 103/158 (65.19%), Query Frame = 1


Query: 14  HDDSANKDSK-VSAELEPSISPNGDIEEE--NDIANMNLGDSNALANGLSSMLMNIMRDF 73
           H +SA + S+ V+   EP+ +P     +   N+ AN+N G S+ALA GLSSML  ++RDF
Sbjct: 7   HCESAEESSQSVTLNSEPNANPQSSESDTSTNNAANIN-GGSDALAKGLSSMLTTVIRDF 66

Query: 74  DSKADDTLKSQSQLSFSLDRLTSVLSYEIEFLPLSNNIVQGKCIELDQLLEDAPFPFIMQ 133
           DSKA DT+ SQ +LSF+LDRL+                      ELDQLLEDAP PF+MQ
Sbjct: 67  DSKAQDTVGSQERLSFALDRLSR---------------------ELDQLLEDAPLPFVMQ 126

Query: 134 HALRISSVRKRVLSLNSILRSVQRRVDNIDRIFVPLKV 169
           HA RIS VRKRV SLNS+L+S+QRR+DN+DR+    K+
Sbjct: 127 HAARISVVRKRVSSLNSVLKSIQRRLDNMDRMLFASKL 142

The following BLAST results are available for this feature:

BLAST of CmoCh01G013540 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh01G013540 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L459_CUCSA	2.1e-32	66.17	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G598520 PE=4 SV=1	[more]
A0A067JMC1_JATCU	8.0e-24	48.10	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22666 PE=4 SV=1	[more]
A0A061GSM6_THECC	1.8e-23	49.69	SNARE-associated protein-related isoform 3 (Fragment) OS=Theobroma cacao GN=TCM_...	[more]
A0A061GTL6_THECC	5.2e-23	50.00	SNARE-associated protein-related isoform 4 (Fragment) OS=Theobroma cacao GN=TCM_...	[more]
A0A061GTW3_THECC	5.2e-23	50.00	SNARE-associated protein-related isoform 1 OS=Theobroma cacao GN=TCM_040872 PE=4...	[more]

BLAST of CmoCh01G013540 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G79070.1	4.6e-23	53.98	SNARE-associated protein-related	[more]

BLAST of CmoCh01G013540 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449453794\|ref\|XP_004144641.1\|	9.9e-44	66.46	PREDICTED: uncharacterized protein LOC101218072 [Cucumis sativus]	[more]
gi\|659087126\|ref\|XP_008444284.1\|	9.9e-44	67.07	PREDICTED: uncharacterized protein LOC103487651 [Cucumis melo]	[more]
gi\|700199763\|gb\|KGN54921.1\|	3.0e-32	66.17	hypothetical protein Csa_4G598520 [Cucumis sativus]	[more]
gi\|1009172926\|ref\|XP_015867538.1\|	2.1e-25	50.00	PREDICTED: uncharacterized protein LOC107405047 isoform X2 [Ziziphus jujuba]	[more]
gi\|1009172924\|ref\|XP_015867537.1\|	2.1e-25	50.00	PREDICTED: uncharacterized protein LOC107405047 isoform X1 [Ziziphus jujuba]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR017246	Snapin
IPR028119	Snapin/Pallidin/Snn1

Vocabulary: **Biological Process**
Term	Definition
GO:0006886	intracellular protein transport

Vocabulary: **Cellular Component**
Term	Definition
GO:0031083	BLOC-1 complex

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006886	intracellular protein transport
biological_process	GO:0008150	biological_process
cellular_component	GO:0031083	BLOC-1 complex
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh01G013540.1	CmoCh01G013540.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR017246	Snapin	PANTHER	PTHR31305	FAMILY NOT NAMED	coord: 115..162 score: 7.9E-22coord: 19..93 score: 7.9
IPR028119	Snapin/Pallidin/Snn1	PFAM	PF14712	Snapin_Pallidin	coord: 115..159 score: 4.

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh01G013540	Cucsa.059010	Cucumber (Gy14) v1	cgycmoB0074
CmoCh01G013540	CmaCh09G007450	Cucurbita maxima (Rimu)	cmacmoB051
CmoCh01G013540	CmaCh01G012990	Cucurbita maxima (Rimu)	cmacmoB468
CmoCh01G013540	Cla023222	Watermelon (97103) v1	cmowmB453
CmoCh01G013540	Csa4G598520	Cucumber (Chinese Long) v2	cmocuB455
CmoCh01G013540	MELO3C010559	Melon (DHL92) v3.5.1	cmomeB439
CmoCh01G013540	ClCG11G016330	Watermelon (Charleston Gray)	cmowcgB387
CmoCh01G013540	CSPI04G21470	Wild cucumber (PI 183967)	cmocpiB459
CmoCh01G013540	Lsi04G018700	Bottle gourd (USVL1VR-Ls)	cmolsiB415
CmoCh01G013540	Cp4.1LG02g02330	Cucurbita pepo (Zucchini)	cmocpeB448
CmoCh01G013540	Cp4.1LG06g05840	Cucurbita pepo (Zucchini)	cmocpeB469
CmoCh01G013540	MELO3C010559.2	Melon (DHL92) v3.6.1	cmomedB503
CmoCh01G013540	CsaV3_4G031800	Cucumber (Chinese Long) v3	cmocucB0543
CmoCh01G013540	Cla97C11G222290	Watermelon (97103) v2	cmowmbB430
CmoCh01G013540	Bhi09G003028	Wax gourd	cmowgoB0620
CmoCh01G013540	CsGy4G020010	Cucumber (Gy14) v2	cgybcmoB477
CmoCh01G013540	Carg20060	Silver-seed gourd	carcmoB1401
CmoCh01G013540	Carg14772	Silver-seed gourd	carcmoB0430

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh01G013540	CmoCh09G007370	Cucurbita moschata (Rifu)	cmocmoB022

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh01G013540	Cucurbita pepo (Zucchini)	cmocpeB461
CmoCh01G013540	Cucurbita moschata (Rifu)	cmocmoB013
CmoCh01G013540	Cucurbita maxima (Rimu)	cmacmoB041