Carg20060 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg20060
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	SNARE-associated protein-related
Location	Cucurbita_argyrosperma_scaffold_126 : 221129 .. 224724 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GAGTAAAGACCTTGACACATTGCTACCTTTTCGGAATTCGGCTAGAAATTCTTCTCTCTGATCCTATCTCCCACGATTGCGCCGGCGACGTCGAACCAGTTAGCGGATTCTTCTGGATTCGAACGAAGTTTAGAGAGACTGCGAACTACGGTAGGTGGTGATGTCCCGTTTTACTAAAATTTATCTATGGAATTCGATTATCATTCCATTCTCGTATTGCTTGATTTTTTAGTATGAATGGAAGCTAATCTCGAGGAAACTTTTGCTTATTGCGGAGTTCTAACCTAGATGCGTTGAGTGATCCTTGTTCAAAAATTCCAGAAAATTAGCGATTCGCTAGTCATGCGCTGTGCTTTTTGTTCCAATCCTCTCGTTGACTGTTCTTCTTCCAGTGATCTTATACTATTATCAGTTTCTTGCATTCATCTGGATGTTCATTTCGTTGGTTTGTAGATAATTTTTTTAGAAAAGTATAGCAGATATAGTTGTCAGTTGCTGCGCATTAACTATATTCTGTTCTAGTATTCAAGAATTTACGATTGAATCTGTATGATTATTTCCGAATAATTGCGGTAGTTGCGAGCTTAACTTCATGGAAATTTCTTGTTCTCGTGTTTTGCTTAAAATTTTGTCCCGGACAGTCGACCCCCGAGATTTATTCTTAGTAGCTATTAGTTTTGATTTTTCTCTCGTTGATGGCACACTCGTTACATGTTGAAATTGTGGAAACTATTTTCATTTTCTTGTGTTTTTCCGCACATTATGGATGTTATAATTGGTTCTATATTGTGCTGGTCACTAGAGAACCTATATGTGTTCGGAGAAAGATGGGCAATTACGATTGTGACAATGAACTTGGCGATCTCTTTCAGGTATTGGCTGAGATGCACGGTCCGGAGAAAGTACCCGACGATCCTGCCAATGAGGACAGCAGTGCCTCTGTTGAATTGTTGACTTCCATTAGTCGAAATGGTGACCTCCAGGAAGAAAATGATCTTGCAAACACGAATTTGGAAAACTCTAATGCTCTAGCAAATGGGCTTTCTTCCATGCTTATCAACATCATAAGGGATTTTGACTCCAAAGCTGATGATACTCTTAAAAGCCAGAGCCAGCTTTCATCTTCCCTTGATCGTATCACTACAGGTAGAATTACTCTTACTTTGTTTTTGTGAGATCCCACATCGGTTGGAGAGGGGAACGAAACATTCTAAAGGTGTGGCAACCTCTCCCTAGTAGACGCGTTGTAAAAACCTTGAGAGGGAAGCCCAGAAGGAAAAGCCCATAGAGGACAATATCGGCTAGCATTATAGCTTTTTCCTATAAAATAGAATCGTTTCCTTGTACGACTTTGACTAATTATATTATAGCAATATAGCTTCGAAGATTCTGTCACTTGCTAGGTTTTACATTATAAATGACATTCTCTCATAATTTACCTTTTTTCTTGTCCTGGATGCAAAAGTTTAACTTCTGAATTTCATGGCCTTTTCAATGTTGTGAAAAGTTATTACTTCAACCTTTACAGAACTGGATCAGTTACTTGAAGCTGCACCTTTTCCATTCATCATGCAGCATGCCTCGAGGATTTCAAGTGTAAGAAAGAGAGTTTTGTCACTAAATTCCATCTTAAGATCCATACAACGAAGATTAGATAACATAGATCGGGCAATCTCGATGGGCAATCAACCAGGTGATTGACTTCTCTCTTCAATGGCCTCAATTTTATTATCTTTTATGGCTTTTAATTTAATGGAAAATTATTGGATAATATCATTGGCTGTCAAGGTTGTTTAATGATGTTCCCATTTCTTGTTTCTAAAAAAAACACATACGTATGATAATGACTATTTGTTTCTTTATTCTCTCCATTTTATCATAATCATTTTCTGTTTTTAATTCATTCGACATACAAGTGTCGAGATTGTGAATCGATGAAGTTTTTGAGTTGCCCTTTGTTCTTCCTGGCATTCCCTGTATTATTCTGTGTATTGATTTACATATAAAATGAACTCAAATTGGGCTAATATTTATTGGAAAACCTCAGTTGTTCCTTCTTATGGAAGATTTTGAACCTTCACATTTACATGTGGAACAAGAAACTTTTTAATGATGATTTTAAACCTCAGTTCTTCCTTCACAGTGTTTATTAATCAAAATATCATATGGTTTTTTTTAAATACATATGTAATTGGACGTGTTCTTAATGTAACAATTTTGTAAGAAGGCATGTTTCTCTGTTGAAGTTTAGGCTAAAGATCTGTTGAGTGTGCAAATATTAGTTTCATGATCTGTTATAACCATACTTCTTAGGCCGTAAATCATGATTTTGTTTTGCTTTCTGAATGTTTGAGCTTACTTCTGGCAATGCCATGGGAAAAAATCATTTTGCATATAGTTTTCATGATTATATGTAATGCTCTTTACCTTCTCCTTTCTTTGACGGAAATTACTGGGTACTTCTTCCTTTAAGATTAGAGGTTCAAATCTTCATGCCTCAACGTTTATTATACGAAAAAAAGAACGAAGTAAAATTTTTTAACTACTCCAAAGGAAGCTTATCTACTAGATACTCAGGTCCAAGTGTACTATTTAAGACATTGGTAATTTGTTTGAAGCTTTGAGAGAATTTCTCATCTTTTTGCGTTTATATGTTATGTTTTCTACCTTTAGTGGAAATTACCGGGTACTTCCTCCTTTTAAGATTAGAGGTTCAAATATTCATGACCCAACATTCATTATACTCAATTTATTGTACGAAAAAAAGAATGAAGTAAAATTTTTTAACTACTCCTAAGGAAGCTTATCTACTAGATACTAAGATCCAAGTGTACTATTTAAGATATATATACTCTACTAGAATCAGTTCCTTGTGTTTTGATGGCTTGTACCTCTTCGCTCCTGAACCTGATTTCACTCTAAACTCGGTTTCGAATCTTTGATCGGTATCCTTTCCTGGCCATTCCCTTCCCTACTCATCTCATCATATAGTCTGCATCAATCAGTGGTATAAATTATAGCATTCATACGCTGAGAAATTACTTGCTCGGTTTTCACTCGTACTGATTACCACAGAATGAAAGACTCCTCCAGATTTCTGTCTCATAATTTGGACCCTCGTCAAATGTCAATAGATTAATTGCTTATTTGGTATCTTATTGAACAAAAATGGTGATATTAATTGCCTAGGCATTCATTTGCAGCTCATTTAGCTGATTGTTTATGCACTATACATTGAAATATTAACTATTTTTTTGTCACGAGAGATCAGTCGAGGTGCACGCAAGCTAGCTTCGAGCCTTGTCTCATTTTCCTCAAATATTCCTTGTTGTGTACAGATACTCTTTCCTCTCAAAGTTCCTCGCAAACTCAACATGGTTGAAGATTGTACGTACTCTACAGGCCCTTTTCTCTCTTCACTGAAAATACTGCGATAGAAAGGCTCTGTGTTTATGAACAATCAATTTTGAATGAACAACATTGGTAATTTATCCATTTGTAAGTTAAGAGTTATGGCTCTGTCACTCTCTCAGGAAAATTTTTAGTCACATATATGTAAATACTCTTTCTTTGACACTATCAATTTTATTTTGCTC

mRNA sequence

GAGTAAAGACCTTGACACATTGCTACCTTTTCGGAATTCGGCTAGAAATTCTTCTCTCTGATCCTATCTCCCACGATTGCGCCGGCGACGTCGAACCAGTTAGCGGATTCTTCTGGATTCGAACGAAGTTTAGAGAGACTGCGAACTACGGTATTGGCTGAGATGCACGGTCCGGAGAAAGTACCCGACGATCCTGCCAATGAGGACAGCAGTGCCTCTGTTGAATTGTTGACTTCCATTAGTCGAAATGAACTGGATCAGTTACTTGAAGCTGCACCTTTTCCATTCATCATGCAGCATGCCTCGAGGATTTCAAGTGTAAGAAAGAGAGTTTTGTCACTAAATTCCATCTTAAGATCCATACAACGAAGATTAGATAACATAGATCGGGCAATCTCGATGGGCAATCAACCAGATACTCTTTCCTCTCAAAGTTCCTCGCAAACTCAACATGGTTGAAGATTGTACGTACTCTACAGGCCCTTTTCTCTCTTCACTGAAAATACTGCGATAGAAAGGCTCTGTGTTTATGAACAATCAATTTTGAATGAACAACATTGGTAATTTATCCATTTGTAAGTTAAGAGTTATGGCTCTGTCACTCTCTCAGGAAAATTTTTAGTCACATATATGTAAATACTCTTTCTTTGACACTATCAATTTTATTTTGCTC

Coding sequence (CDS)

ATGCACGGTCCGGAGAAAGTACCCGACGATCCTGCCAATGAGGACAGCAGTGCCTCTGTTGAATTGTTGACTTCCATTAGTCGAAATGAACTGGATCAGTTACTTGAAGCTGCACCTTTTCCATTCATCATGCAGCATGCCTCGAGGATTTCAAGTGTAAGAAAGAGAGTTTTGTCACTAAATTCCATCTTAAGATCCATACAACGAAGATTAGATAACATAGATCGGGCAATCTCGATGGGCAATCAACCAGATACTCTTTCCTCTCAAAGTTCCTCGCAAACTCAACATGGTTGA

Protein sequence

MHGPEKVPDDPANEDSSASVELLTSISRNELDQLLEAAPFPFIMQHASRISSVRKRVLSLNSILRSIQRRLDNIDRAISMGNQPDTLSSQSSSQTQHG

Homology

[Close]

BLAST of Carg20060 vs. NCBI nr
Match: XP_022936774.1 (uncharacterized protein LOC111443260 isoform X2 [Cucurbita moschata] >XP_022936775.1 uncharacterized protein LOC111443260 isoform X2 [Cucurbita moschata])

HSP 1 Score: 143.7 bits (361), Expect = 3.4e-31
Identity = 92/156 (58.97%), Postives = 93/156 (59.62%), Query Frame = 0


Query: 1   MHGPEKVPDDPANEDSSASVELLTSISRN------------------------------- 60
           MH PEKV DDPANEDSS SVEL TSISRN                               
Sbjct: 1   MHSPEKVLDDPANEDSSVSVELETSISRNGDLKEENDLANTNLENSNALANGLSSMLINI 60

Query: 61  ---------------------------ELDQLLEAAPFPFIMQHASRISSVRKRVLSLNS 99
                                      ELDQLLEAAPFPFIMQHASRISSVRKRVLSLNS
Sbjct: 61  IRDFDSKADDTLKSQSQLSSSLDRITTELDQLLEAAPFPFIMQHASRISSVRKRVLSLNS 120

[Close]

BLAST of Carg20060 vs. NCBI nr
Match: XP_023535159.1 (uncharacterized protein LOC111796673 [Cucurbita pepo subsp. pepo] >XP_023535160.1 uncharacterized protein LOC111796673 [Cucurbita pepo subsp. pepo] >XP_023535161.1 uncharacterized protein LOC111796673 [Cucurbita pepo subsp. pepo] >XP_023535162.1 uncharacterized protein LOC111796673 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 142.9 bits (359), Expect = 5.8e-31
Identity = 91/156 (58.33%), Postives = 93/156 (59.62%), Query Frame = 0


Query: 1   MHGPEKVPDDPANEDSSASVELLTSISRN------------------------------- 60
           MH PEKV DDPANEDS+ SVEL TSISRN                               
Sbjct: 1   MHSPEKVLDDPANEDSNVSVELETSISRNGGLQEENDLANTNLENSNALANGLSSMLINI 60

Query: 61  ---------------------------ELDQLLEAAPFPFIMQHASRISSVRKRVLSLNS 99
                                      ELDQLLE APFPFIMQHASRISSVRKRVLSLNS
Sbjct: 61  IRDFDSKADDTLKSQSQLSSSLDRITIELDQLLEDAPFPFIMQHASRISSVRKRVLSLNS 120

[Close]

BLAST of Carg20060 vs. NCBI nr
Match: XP_022976873.1 (uncharacterized protein LOC111477110 [Cucurbita maxima] >XP_022976874.1 uncharacterized protein LOC111477110 [Cucurbita maxima] >XP_022976875.1 uncharacterized protein LOC111477110 [Cucurbita maxima] >XP_022976876.1 uncharacterized protein LOC111477110 [Cucurbita maxima] >XP_022976877.1 uncharacterized protein LOC111477110 [Cucurbita maxima])

HSP 1 Score: 141.4 bits (355), Expect = 1.7e-30
Identity = 91/156 (58.33%), Postives = 92/156 (58.97%), Query Frame = 0


Query: 1   MHGPEKVPDDPANEDSSASVELLTSISRN------------------------------- 60
           MH PEKV DDPANEDSS SVEL TSISRN                               
Sbjct: 1   MHSPEKVLDDPANEDSSFSVELETSISRNGNLKEENDLANTNLENSNALANGLSSMLINI 60

Query: 61  ---------------------------ELDQLLEAAPFPFIMQHASRISSVRKRVLSLNS 99
                                      ELDQLLE APFPFIMQHASRISSVRKRVLSLNS
Sbjct: 61  IRDFDSKADDTLKSQSQLSSSLDRITTELDQLLEDAPFPFIMQHASRISSVRKRVLSLNS 120

[Close]

BLAST of Carg20060 vs. NCBI nr
Match: XP_022936769.1 (uncharacterized protein LOC111443260 isoform X1 [Cucurbita moschata] >XP_022936770.1 uncharacterized protein LOC111443260 isoform X1 [Cucurbita moschata] >XP_022936771.1 uncharacterized protein LOC111443260 isoform X1 [Cucurbita moschata] >XP_022936772.1 uncharacterized protein LOC111443260 isoform X1 [Cucurbita moschata] >XP_022936773.1 uncharacterized protein LOC111443260 isoform X1 [Cucurbita moschata])

HSP 1 Score: 141.0 bits (354), Expect = 2.2e-30
Identity = 92/163 (56.44%), Postives = 93/163 (57.06%), Query Frame = 0


Query: 1   MHGPEKVPDDPANEDSSASVELLTSISRN------------------------------- 60
           MH PEKV DDPANEDSS SVEL TSISRN                               
Sbjct: 1   MHSPEKVLDDPANEDSSVSVELETSISRNGDLKEENDLANTNLENSNALANGLSSMLINI 60

Query: 61  ----------------------------------ELDQLLEAAPFPFIMQHASRISSVRK 99
                                             ELDQLLEAAPFPFIMQHASRISSVRK
Sbjct: 61  IRDFDSKADDTLKSQSQLSSSLDRITTVITSTFTELDQLLEAAPFPFIMQHASRISSVRK 120

[Close]

BLAST of Carg20060 vs. NCBI nr
Match: XP_022143160.1 (uncharacterized protein LOC111013092 [Momordica charantia] >XP_022143168.1 uncharacterized protein LOC111013092 [Momordica charantia] >XP_022143175.1 uncharacterized protein LOC111013092 [Momordica charantia] >XP_022143183.1 uncharacterized protein LOC111013092 [Momordica charantia])

HSP 1 Score: 114.4 bits (285), Expect = 2.2e-22
Identity = 65/92 (70.65%), Postives = 75/92 (81.52%), Query Frame = 0


Query: 9   DDPANEDSSASVELLTSISR--NELDQLLEAAPFPFIMQHASRISSVRKRVLSLNSILRS 68
           D  A++   +  +L +S+ R  +ELDQLLE APFPFIMQHASRIS+VRKRVLSLNSILRS
Sbjct: 65  DSKADDTLKSQSQLSSSLDRLTSELDQLLEDAPFPFIMQHASRISNVRKRVLSLNSILRS 124

Query: 69  IQRRLDNIDRAISMGNQPDTLSSQSSSQTQHG 99
           IQRR+DNIDRAI+MGN  DT SSQSS Q QHG
Sbjct: 125 IQRRVDNIDRAIAMGNLQDTCSSQSSLQPQHG 156

[Close]

BLAST of Carg20060 vs. TAIR10
Match: AT1G79070.1 (SNARE-associated protein-related)

HSP 1 Score: 76.3 bits (186), Expect = 1.2e-14
Identity = 44/86 (51.16%), Postives = 60/86 (69.77%), Query Frame = 0


Query: 9   DDPANEDSSASVELLTSISR--NELDQLLEAAPFPFIMQHASRISSVRKRVLSLNSILRS 68
           D  A +  ++  EL  S+ R   ELDQLLE AP PFI+QHASRISSV++RV SLN +L+S
Sbjct: 53  DSKALDTLNSQDELSGSLDRLVQELDQLLENAPLPFIVQHASRISSVKQRVSSLNLVLKS 112

Query: 69  IQRRLDNIDRAISMGNQPDTLSSQSS 93
           +QRR+DNID  +S     +  SS+++
Sbjct: 113 VQRRIDNIDHMLSANTTQEKASSETT 138

[Close]

BLAST of Carg20060 vs. TrEMBL
Match: tr|A0A1S3BAU4|A0A1S3BAU4_CUCME (uncharacterized protein LOC103487651 OS=Cucumis melo OX=3656 GN=LOC103487651 PE=4 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 3.0e-20
Identity = 61/88 (69.32%), Postives = 71/88 (80.68%), Query Frame = 0


Query: 9   DDPANEDSSASVELLTSISR--NELDQLLEAAPFPFIMQHASRISSVRKRVLSLNSILRS 68
           D  A++   +   L +S+ R   ELDQLLE APFPFIMQHASRIS+VRKRVLSLNSILR+
Sbjct: 66  DSKADDTLKSQNHLSSSLDRLTTELDQLLEDAPFPFIMQHASRISNVRKRVLSLNSILRT 125

Query: 69  IQRRLDNIDRAISMGNQPDTLSSQSSSQ 95
           IQRR+DNIDRAI+MGN PDT SS +SSQ
Sbjct: 126 IQRRVDNIDRAITMGNLPDTRSSPNSSQ 153

[Close]

BLAST of Carg20060 vs. TrEMBL
Match: tr|A0A1S2XG49|A0A1S2XG49_CICAR (uncharacterized protein LOC101502919 OS=Cicer arietinum OX=3827 GN=LOC101502919 PE=4 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 2.1e-13
Identity = 46/76 (60.53%), Postives = 60/76 (78.95%), Query Frame = 0


Query: 17  SASVELLTSISRNELDQLLEAAPFPFIMQHASRISSVRKRVLSLNSILRSIQRRLDNIDR 76
           S+S++ LT     ELDQLLE AP PFIMQHA++ISSVRKRVLSLNS+L+SIQ R+DNIDR
Sbjct: 80  SSSIDRLT----GELDQLLEDAPLPFIMQHAAKISSVRKRVLSLNSLLKSIQGRIDNIDR 139

Query: 77  AISMGNQPDTLSSQSS 93
            +S+G   +  +++ S
Sbjct: 140 IMSIGTTHEKAATEGS 151

[Close]

BLAST of Carg20060 vs. TrEMBL
Match: tr|A0A0B0NC18|A0A0B0NC18_GOSAR (SNARE-associated Snapin OS=Gossypium arboreum OX=29729 GN=F383_10178 PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 2.8e-13
Identity = 50/81 (61.73%), Postives = 63/81 (77.78%), Query Frame = 0


Query: 15  DSSASVELL-TSISR--NELDQLLEAAPFPFIMQHASRISSVRKRVLSLNSILRSIQRRL 74
           D+ AS +LL +SI R   ELDQLLE AP PFIMQHA + S+VRKRVLSLN +L+SIQRR+
Sbjct: 74  DTLASQDLLSSSIDRLTRELDQLLEDAPSPFIMQHAVKFSNVRKRVLSLNLLLKSIQRRV 133

Query: 75  DNIDRAISMGNQPDTLSSQSS 93
           DNIDR +SMG Q +  +++ S
Sbjct: 134 DNIDRMLSMGLQHEKTATEGS 154

[Close]

BLAST of Carg20060 vs. TrEMBL
Match: tr|A0A1U8PHS3|A0A1U8PHS3_GOSHI (uncharacterized protein LOC107959271 OS=Gossypium hirsutum OX=3635 GN=LOC107959271 PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 2.8e-13
Identity = 50/81 (61.73%), Postives = 63/81 (77.78%), Query Frame = 0


Query: 15  DSSASVELL-TSISR--NELDQLLEAAPFPFIMQHASRISSVRKRVLSLNSILRSIQRRL 74
           D+ AS +LL +SI R   ELDQLLE AP PFIMQHA + S+VRKRVLSLN +L+SIQRR+
Sbjct: 74  DTLASQDLLSSSIDRLTRELDQLLEDAPSPFIMQHAVKFSNVRKRVLSLNLLLKSIQRRV 133

Query: 75  DNIDRAISMGNQPDTLSSQSS 93
           DNIDR +SMG Q +  +++ S
Sbjct: 134 DNIDRMLSMGLQHEKTATEGS 154

[Close]

BLAST of Carg20060 vs. TrEMBL
Match: tr|A0A165Y8P8|A0A165Y8P8_DAUCA (Uncharacterized protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_013747 PE=4 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 3.6e-13
Identity = 47/75 (62.67%), Postives = 55/75 (73.33%), Query Frame = 0


Query: 9   DDPANEDSSASVELLTSISR--NELDQLLEAAPFPFIMQHASRISSVRKRVLSLNSILRS 68
           D  A E   +  +L  SI R   ELDQLLE AP PFIMQHA++IS VRKRV SLNS+L+S
Sbjct: 71  DSRAEETIRSQNQLSFSIDRLTGELDQLLEDAPLPFIMQHAAKISGVRKRVSSLNSVLKS 130

Query: 69  IQRRLDNIDRAISMG 82
           +QRRLDNIDR +S G
Sbjct: 131 VQRRLDNIDRTLSAG 145

The following BLAST results are available for this feature:

BLAST of Carg20060 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022936774.1	3.4e-31	58.97	uncharacterized protein LOC111443260 isoform X2 [Cucurbita moschata] >XP_0229367...	[more]
XP_023535159.1	5.8e-31	58.33	uncharacterized protein LOC111796673 [Cucurbita pepo subsp. pepo] >XP_023535160....	[more]
XP_022976873.1	1.7e-30	58.33	uncharacterized protein LOC111477110 [Cucurbita maxima] >XP_022976874.1 uncharac...	[more]
XP_022936769.1	2.2e-30	56.44	uncharacterized protein LOC111443260 isoform X1 [Cucurbita moschata] >XP_0229367...	[more]
XP_022143160.1	2.2e-22	70.65	uncharacterized protein LOC111013092 [Momordica charantia] >XP_022143168.1 uncha...	[more]

BLAST of Carg20060 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G79070.1	1.2e-14	51.16	SNARE-associated protein-related	[more]

BLAST of Carg20060 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg20060 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BAU4\|A0A1S3BAU4_CUCME	3.0e-20	69.32	uncharacterized protein LOC103487651 OS=Cucumis melo OX=3656 GN=LOC103487651 PE=...	[more]
tr\|A0A1S2XG49\|A0A1S2XG49_CICAR	2.1e-13	60.53	uncharacterized protein LOC101502919 OS=Cicer arietinum OX=3827 GN=LOC101502919 ...	[more]
tr\|A0A0B0NC18\|A0A0B0NC18_GOSAR	2.8e-13	61.73	SNARE-associated Snapin OS=Gossypium arboreum OX=29729 GN=F383_10178 PE=4 SV=1	[more]
tr\|A0A1U8PHS3\|A0A1U8PHS3_GOSHI	2.8e-13	61.73	uncharacterized protein LOC107959271 OS=Gossypium hirsutum OX=3635 GN=LOC1079592...	[more]
tr\|A0A165Y8P8\|A0A165Y8P8_DAUCA	3.6e-13	62.67	Uncharacterized protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_013747 ...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Cellular Component**
Term	Definition
GO:0031083	BLOC-1 complex

Vocabulary: **Biological Process**
Term	Definition
GO:0006886	intracellular protein transport

Vocabulary: **INTERPRO**
Term	Definition
IPR017246	Snapin
IPR028119	Snapin/Pallidin/Snn1

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006886	intracellular protein transport
cellular_component	GO:0031083	BLOC-1 complex
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg20060-RA	Carg20060-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR028119	Snapin/Pallidin/Snn1	PFAM	PF14712	Snapin_Pallidin	coord: 28..74 e-value: 9.4E-10 score: 38.7
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 79..98
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 76..98
IPR017246	Snapin	PANTHER	PTHR31305	FAMILY NOT NAMED	coord: 29..97

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg20060	MELO3C010559	Melon (DHL92) v3.5.1	carmeB1012
Carg20060	ClCG11G016330	Watermelon (Charleston Gray)	carwcgB1018
Carg20060	CSPI04G21470	Wild cucumber (PI 183967)	carcpiB1082
Carg20060	Cucsa.059010	Cucumber (Gy14) v1	carcgyB1160
Carg20060	CmaCh09G007450	Cucurbita maxima (Rimu)	carcmaB1445
Carg20060	CmaCh01G012990	Cucurbita maxima (Rimu)	carcmaB1447
Carg20060	CmoCh01G013540	Cucurbita moschata (Rifu)	carcmoB1401
Carg20060	CmoCh09G007370	Cucurbita moschata (Rifu)	carcmoB1399
Carg20060	Lsi04G018700	Bottle gourd (USVL1VR-Ls)	carlsiB954
Carg20060	Cp4.1LG06g05840	Cucurbita pepo (Zucchini)	carcpeB1455
Carg20060	Cp4.1LG02g02330	Cucurbita pepo (Zucchini)	carcpeB1453
Carg20060	CsGy4G020010	Cucumber (Gy14) v2	carcgybB1029
Carg20060	MELO3C010559.2	Melon (DHL92) v3.6.1	carmedB1024
Carg20060	CsaV3_4G031800	Cucumber (Chinese Long) v3	carcucB1093
Carg20060	Cla97C11G222290	Watermelon (97103) v2	carwmbB1104
Carg20060	Bhi09G003028	Wax gourd	carwgoB1223

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg20060	Silver-seed gourd	carcarB340
Carg20060	Cucurbita maxima (Rimu)	carcmaB1446
Carg20060	Cucurbita moschata (Rifu)	carcmoB1400
Carg20060	Cucurbita pepo (Zucchini)	carcpeB1454
Carg20060	Watermelon (97103) v1	carwmB1046