CmaCh01G012990 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh01G012990
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionSNARE-associated family protein
LocationCma_Chr01 : 9302287 .. 9305539 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CAGGAATCTTTAAGCTGATCTCCGTTTCCGACGATTCCACCGGCGACGACGAACAGTTCGTGAAGTTTGGCGAGACTGTGAACTGCGGTAGGTGGCAGTTTCCTTTTTCTTACTTCTGATGTGATTTCTCTCTGGAATTTGGTTCTCAATCTATGCTCGTATTACTACATTTTTGTTGTTTGTTTGAGTTTCAATGGAGGTTAATCTCGCGGAATTTTTCATATCACGGAGTTATGGCCTCAAATTTGGTTTTAAAAAAATCGAGTGATCTCGGTTCAAGAATTCCAGAAATCGAGCATTTCGTTCGTCGTGCATTGTGTTTATTGTTTCAATATTATCGTGTAGCATTCGGTGTCGACTTTTCTTCTTCCAGATGTCTCTTAATATTGTCAGTTTCTTGCTTCATTGATCACTTCTTTTTTAGGCAAAATTACAGTAGAATAATTGTTAGTTTCTCGGCATTGACTAGTTCTGTTCTGGTCTTCAAGATTTCACGATTGAAACTGCATATTAGTTCCGTTACAATTGTAGTAGCTGCGATCTTAACTTTATGGTGTTTCTAGACACTTATTAGATGCTGAAATCGTGGAAGCTATTTTCAGTTTATCTTTGTTGTCTCACATTATTGACGCACTATACTGGTAGCTAACGAACTTACAGGTGGGCGATTTTCACTGTGAATAATGAACTTGGTGATCTCTTTCAGAAATTGCAAGGGATGCACAGTCTGGAGAAAGTGCACGATGATTCTGCCAACAAGGACAGCAAAGTCTCTGCTGAATTGGAGCCTTCTATTAGTCCAAATGGTGATTTCGAGAAAGAAAATGATATCGCAAAGATGAATTTGGGAAACTCTAATGCTCTAGCAAATGGGCTCTCTTCCATGCTTAAGAACATCATGAGGGATTTTGACTCCAAAGCTGATGATACTCTTAAAAGCCAAAGCCAGCTTTCATTTTCCCTTGACCGACTTACTTCAGGTAGGATTACATTTACTTTGTTTTATTACTTTTATCATATAAAATAGAATTTCTTCCTTTGTCCAATAATATAGTTTAGGGGAAGTGTATAGGTAAATGATATTCTCTCATAATTTACCTTTTTTCTTGTCATAGATGCAAAATTGAAGCTTCTGAGTTTCATGGTTTTTTCAATGGTATAAAAAGATATTATTTTAACTTTTAACAGAACTGGATCAATTACTTGAAGATGCTCCTTTTCCATTCATCATGCAGCATGCCTTGAGGATTTCTAGTGTAAGAAAGAGAGTGTTGTCTCTAAATTCCATCTTAAGATCCGTACAACGAAGAGTAGATAACATAGATCGGGCGATCTCGATGAGTAATTTACCAGGTGATTGATTTCTCCCTTCAAGGGCCTCAATTTTGTTGTCTTTTATGGCTTTTAATTTAGTGGAAACTTATTGAATAATATCATTGGCTGTCGAGGTTTGTTCAATAAAGGTCCTTATTCTCTCCATTCTATTGGAAAAGGAAAGGTGTTATTCCCATAAAATAATGACAAGAAGAACCAAGTGAACTCAAAACTTCAATAAAGATCCTTGTTCCTGGCATTCCCTATATAATTCTTTTTGCAGTCATGTGGGCTATTTTTGTTAGCTCCTAATTGTCAGATTTTATACGCAACTTTTCACTACATTATTGAACCGTGTGGAATCAATATATTCATTTGAAAACCTCTGTTGTGACTTCTTATGGAAGATTTAAAACTTTTCCCTTAACATGTTGCACAAAGAGGATTTAGTAACGATTTTAAACCTACAAATAAGGATCTTTTACTTTTGAATAAGAGGTGGAATTGAGGTATCAATTGCAAAACCTCAGCTGTTCTTTCTCTCAGGGCCTCATTCGAATATCATATGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTTTTTTTTTTTTTTTTTTTTGTACACATGCATTTGGATTTGTACCTAATGTGGCTCTGCCCACCAATTCTGGCATGTTTCTTCGTTGAATGAGACCAACGTTTTAGTTTTTGAAAATTTTAGGCTAAGAATCTATTCTCTCGTTCAAGCATAGTACCATGATTTTTTTAAAGCCATGCCTCTGAGGTCATAAATCATGATTTTGTTTTGCTTTCTGAATTACATTTGGTGATGCATCCATGGGACAAATCATTTTGCTTCTTTACAGAATAGTCTTGATCTTGACAACTTGATTTCTTTCTTTTTTGTGCTTCTTTTTTCAAATGTTGATGACACATACTTTCCATGAGATGCTGTAATAAAATTCACTTATTATAGTAAGTTTTTGTTATTGAATTTCCTTTAGTTTCCAGACATTCGAATATCTATGTATGTAGGTTTTCTTCTGGGAACAAGAAACAAGTACGTAGGATATTGAAATTTCACATATATTCATCCCCGGGTAATTACCATAATAGCTGAAGTAAAAATACTTGTAGTGCTTTCTACCTTATCCTTTCTTGAATGTACTTGTCTTTCCCCTGCCTGTGCTATTATCTCTCAGTCTGACAACCTTTCTCTTGCCCCTCTCTCTGAAGCTCTGGAGACGGAAGAAGAGAGAGAGAAACACCAAAACAGATGCAAGTTGACTGGTGGAGGGCAGTAGGGTTTGACAATGGGGAAAAAGATTGATTTTGGAACTTAGTCGAGGAAATATGGTATTTACCTTTTTAAAATGCTGCGTATGAAGAATGAAGTAAAATTTTGGAGTGACTCCAAATGGAAGTTTATGTATGAACTCTCATAATGTCACTAGATACTTAAGGTCCCTAGATACTTAAGGTCCGAGTGGACTATTTAAGAGATATTACTCTACTAGAATCAGTGCCTTGTGTGTTTGTGTGTCCGGGTCACCTTGCGTGTATCTTGACTAATCTCATGGCACAACCATCTGACTGCACTACATTTGGTTGCCAAGGAAACTCTTAATATGTTAAATGCTAGGTAGATGACTACCATGATCGGAACTATATATATATATATATATTCTCTCCTCTCTTTTCTTTTTTTGAAGGAGTGGACACGAAGCGGCGTGCCAACAAGGACGGTATAAGAGTGTGGAAACCTTAGCCTAAATGATCGAGTCATAATAAAG

mRNA sequence

CAGGAATCTTTAAGCTGATCTCCGTTTCCGACGATTCCACCGGCGACGACGAACAGTTCGTGAAGTTTGGCGAGACTGTGAACTGCGAAATTGCAAGGGATGCACAGTCTGGAGAAAGTGCACGATGATTCTGCCAACAAGGACAGCAAAGTCTCTGCTGAATTGGAGCCTTCTATTAGTCCAAATGGTGATTTCGAGAAAGAAAATGATATCGCAAAGATGAATTTGGGAAACTCTAATGCTCTAGCAAATGGGCTCTCTTCCATGCTTAAGAACATCATGAGGGATTTTGACTCCAAAGCTGATGATACTCTTAAAAGCCAAAGCCAGCTTTCATTTTCCCTTGACCGACTTACTTCAGAACTGGATCAATTACTTGAAGATGCTCCTTTTCCATTCATCATGCAGCATGCCTTGAGGATTTCTAGTGTAAGAAAGAGAGTGTTGTCTCTAAATTCCATCTTAAGATCCGTACAACGAAGAGTAGATAACATAGATCGGGCGATCTCGATGAGTAATTTACCAGCTCTGGAGACGGAAGAAGAGAGAGAGAAACACCAAAACAGATGCAAGTTGACTGGTGGAGGGCAGTAGGGTTTGACAATGGGGAAAAAGATTGATTTTGGAACTTAGTCGAGGAAATATGGTATTTACCTTTTTAAAATGCTGCGTATGAAGAATGAAGTAAAATTTTGGAGTGACTCCAAATGGAAGTTTATGTATGAACTCTCATAATGTCACTAGATACTTAAGGTCCCTAGATACTTAAGGTCCGAGTGGACTATTTAAGAGATATTACTCTACTAGAATCAGTGCCTTGTGTGTTTGTGTGTCCGGGTCACCTTGCGTGTATCTTGACTAATCTCATGGCACAACCATCTGACTGCACTACATTTGGTTGCCAAGGAAACTCTTAATATGTTAAATGCTAGGTAGATGACTACCATGATCGGAACTATATATATATATATATATTCTCTCCTCTCTTTTCTTTTTTTGAAGGAGTGGACACGAAGCGGCGTGCCAACAAGGACGGTATAAGAGTGTGGAAACCTTAGCCTAAATGATCGAGTCATAATAAAG

Coding sequence (CDS)

ATGCACAGTCTGGAGAAAGTGCACGATGATTCTGCCAACAAGGACAGCAAAGTCTCTGCTGAATTGGAGCCTTCTATTAGTCCAAATGGTGATTTCGAGAAAGAAAATGATATCGCAAAGATGAATTTGGGAAACTCTAATGCTCTAGCAAATGGGCTCTCTTCCATGCTTAAGAACATCATGAGGGATTTTGACTCCAAAGCTGATGATACTCTTAAAAGCCAAAGCCAGCTTTCATTTTCCCTTGACCGACTTACTTCAGAACTGGATCAATTACTTGAAGATGCTCCTTTTCCATTCATCATGCAGCATGCCTTGAGGATTTCTAGTGTAAGAAAGAGAGTGTTGTCTCTAAATTCCATCTTAAGATCCGTACAACGAAGAGTAGATAACATAGATCGGGCGATCTCGATGAGTAATTTACCAGCTCTGGAGACGGAAGAAGAGAGAGAGAAACACCAAAACAGATGCAAGTTGACTGGTGGAGGGCAGTAG

Protein sequence

MHSLEKVHDDSANKDSKVSAELEPSISPNGDFEKENDIAKMNLGNSNALANGLSSMLKNIMRDFDSKADDTLKSQSQLSFSLDRLTSELDQLLEDAPFPFIMQHALRISSVRKRVLSLNSILRSVQRRVDNIDRAISMSNLPALETEEEREKHQNRCKLTGGGQ
Homology
[Close]
BLAST of CmaCh01G012990 vs. TrEMBL
Match: A0A0A0L459_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G598520 PE=4 SV=1)

HSP 1 Score: 154.8 bits (390), Expect = 8.8e-35
Identity = 87/112 (77.68%), Postives = 96/112 (85.71%), Query Frame = 1 

Query: 1   MHSLEKVHDD-SANKDSKVSAELEPSISPNGDFEKENDIAKMNLGNSNALANGLSSMLKN 60
           MHS EK+ DD SAN+DS VSAELE SI+ NGD ++ ND    NLGNSNALANGLSSML N
Sbjct: 1   MHSPEKLDDDYSANEDSNVSAELETSITLNGDLQEGNDSENKNLGNSNALANGLSSMLIN 60

Query: 61  IMRDFDSKADDTLKSQSQLSFSLDRLTSELDQLLEDAPFPFIMQHALRISSV 112
           I+RDFDSKADDTLKSQ+ LS SLDRLT+ELDQLLEDAPFPFIMQHA RIS+V
Sbjct: 61  IIRDFDSKADDTLKSQNHLSSSLDRLTTELDQLLEDAPFPFIMQHASRISNV 112

[Close]
BLAST of CmaCh01G012990 vs. TrEMBL
Match: A0A067JMC1_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22666 PE=4 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 1.4e-27
Identity = 78/144 (54.17%), Postives = 105/144 (72.92%), Query Frame = 1 

Query: 10  DSANKDSK-VSAELEPSISPNGDFE-----------KENDIAKMNLGNSNALANGLSSML 69
           DS ++ S  +S E E ++S NG+ +           K N   ++N  +S+ALA GLS+ML
Sbjct: 9   DSTDQSSVCISVEAERTVSSNGNKDSNEINSQEHKSKTNTEDEINK-SSDALAKGLSTML 68

Query: 70  KNIMRDFDSKADDTLKSQSQLSFSLDRLTSELDQLLEDAPFPFIMQHALRISSVRKRVLS 129
            N++RDFDSKA +TLKSQ QL+ ++DRLT ELDQLLEDAP PFIMQHA +IS V+KRV S
Sbjct: 69  ANVIRDFDSKAQETLKSQDQLNSAIDRLTRELDQLLEDAPLPFIMQHAAKISGVKKRVSS 128

Query: 130 LNSILRSVQRRVDNIDRAISMSNL 142
           LNS+L+S+QRR+DN+DR +S+  L
Sbjct: 129 LNSLLKSIQRRIDNMDRMLSVGVL 151

[Close]
BLAST of CmaCh01G012990 vs. TrEMBL
Match: A0A061GTL6_THECC (SNARE-associated protein-related isoform 4 (Fragment) OS=Theobroma cacao GN=TCM_040872 PE=4 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 1.8e-27
Identity = 77/132 (58.33%), Postives = 96/132 (72.73%), Query Frame = 1 

Query: 8   HDDSANKDSKVSAELEPS-ISPNGDFEKENDIAKMNLGNSNALANGLSSMLKNIMRDFDS 67
           +DD     S VS E+ PS  SP  D +  ND +  +  ++ ALA  LSSML ++++DFDS
Sbjct: 7   NDDDNATISDVSVEVNPSNSSPTPDSQSNNDPSDND--STEALAKALSSMLTSLIKDFDS 66

Query: 68  KADDTLKSQSQLSFSLDRLTSELDQLLEDAPFPFIMQHALRISSVRKRVLSLNSILRSVQ 127
           KA DTL SQ  LS S+DRLT ELDQLLEDAP PFIMQHA + S+VRKRV SLN +L+S+Q
Sbjct: 67  KAHDTLTSQDLLSSSIDRLTRELDQLLEDAPLPFIMQHAAKFSNVRKRVFSLNLLLKSIQ 126

Query: 128 RRVDNIDRAISM 139
           RR+DNIDR +SM
Sbjct: 127 RRIDNIDRMLSM 136

[Close]
BLAST of CmaCh01G012990 vs. TrEMBL
Match: A0A061GZD6_THECC (SNARE-associated protein-related isoform 2 (Fragment) OS=Theobroma cacao GN=TCM_040872 PE=4 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 1.8e-27
Identity = 77/132 (58.33%), Postives = 96/132 (72.73%), Query Frame = 1 

Query: 8   HDDSANKDSKVSAELEPS-ISPNGDFEKENDIAKMNLGNSNALANGLSSMLKNIMRDFDS 67
           +DD     S VS E+ PS  SP  D +  ND +  +  ++ ALA  LSSML ++++DFDS
Sbjct: 4   NDDDNATISDVSVEVNPSNSSPTPDSQSNNDPSDND--STEALAKALSSMLTSLIKDFDS 63

Query: 68  KADDTLKSQSQLSFSLDRLTSELDQLLEDAPFPFIMQHALRISSVRKRVLSLNSILRSVQ 127
           KA DTL SQ  LS S+DRLT ELDQLLEDAP PFIMQHA + S+VRKRV SLN +L+S+Q
Sbjct: 64  KAHDTLTSQDLLSSSIDRLTRELDQLLEDAPLPFIMQHAAKFSNVRKRVFSLNLLLKSIQ 123

Query: 128 RRVDNIDRAISM 139
           RR+DNIDR +SM
Sbjct: 124 RRIDNIDRMLSM 133

[Close]
BLAST of CmaCh01G012990 vs. TrEMBL
Match: A0A061GSM6_THECC (SNARE-associated protein-related isoform 3 (Fragment) OS=Theobroma cacao GN=TCM_040872 PE=4 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 1.8e-27
Identity = 77/132 (58.33%), Postives = 96/132 (72.73%), Query Frame = 1 

Query: 8   HDDSANKDSKVSAELEPS-ISPNGDFEKENDIAKMNLGNSNALANGLSSMLKNIMRDFDS 67
           +DD     S VS E+ PS  SP  D +  ND +  +  ++ ALA  LSSML ++++DFDS
Sbjct: 42  NDDDNATISDVSVEVNPSNSSPTPDSQSNNDPSDND--STEALAKALSSMLTSLIKDFDS 101

Query: 68  KADDTLKSQSQLSFSLDRLTSELDQLLEDAPFPFIMQHALRISSVRKRVLSLNSILRSVQ 127
           KA DTL SQ  LS S+DRLT ELDQLLEDAP PFIMQHA + S+VRKRV SLN +L+S+Q
Sbjct: 102 KAHDTLTSQDLLSSSIDRLTRELDQLLEDAPLPFIMQHAAKFSNVRKRVFSLNLLLKSIQ 161

Query: 128 RRVDNIDRAISM 139
           RR+DNIDR +SM
Sbjct: 162 RRIDNIDRMLSM 171

[Close]
BLAST of CmaCh01G012990 vs. TAIR10
Match: AT1G79070.1 (AT1G79070.1 SNARE-associated protein-related)

HSP 1 Score: 119.4 bits (298), Expect = 2.1e-27
Identity = 62/94 (65.96%), Postives = 78/94 (82.98%), Query Frame = 1 

Query: 44  GNSNALANGLSSMLKNIMRDFDSKADDTLKSQSQLSFSLDRLTSELDQLLEDAPFPFIMQ 103
           G   A+A GLS+ML+++++DFDSKA DTL SQ +LS SLDRL  ELDQLLE+AP PFI+Q
Sbjct: 32  GGGEAMARGLSAMLESVIKDFDSKALDTLNSQDELSGSLDRLVQELDQLLENAPLPFIVQ 91

Query: 104 HALRISSVRKRVLSLNSILRSVQRRVDNIDRAIS 138
           HA RISSV++RV SLN +L+SVQRR+DNID  +S
Sbjct: 92  HASRISSVKQRVSSLNLVLKSVQRRIDNIDHMLS 125

[Close]
BLAST of CmaCh01G012990 vs. NCBI nr
Match: gi|449453794|ref|XP_004144641.1| (PREDICTED: uncharacterized protein LOC101218072 [Cucumis sativus])

HSP 1 Score: 204.1 bits (518), Expect = 1.8e-49
Identity = 113/143 (79.02%), Postives = 126/143 (88.11%), Query Frame = 1 

Query: 1   MHSLEKVHDD-SANKDSKVSAELEPSISPNGDFEKENDIAKMNLGNSNALANGLSSMLKN 60
           MHS EK+ DD SAN+DS VSAELE SI+ NGD ++ ND    NLGNSNALANGLSSML N
Sbjct: 1   MHSPEKLDDDYSANEDSNVSAELETSITLNGDLQEGNDSENKNLGNSNALANGLSSMLIN 60

Query: 61  IMRDFDSKADDTLKSQSQLSFSLDRLTSELDQLLEDAPFPFIMQHALRISSVRKRVLSLN 120
           I+RDFDSKADDTLKSQ+ LS SLDRLT+ELDQLLEDAPFPFIMQHA RIS+VRKRVLSLN
Sbjct: 61  IIRDFDSKADDTLKSQNHLSSSLDRLTTELDQLLEDAPFPFIMQHASRISNVRKRVLSLN 120

Query: 121 SILRSVQRRVDNIDRAISMSNLP 143
           SILR++QRR+DNIDRAI+M NLP
Sbjct: 121 SILRTIQRRMDNIDRAITMGNLP 143

[Close]
BLAST of CmaCh01G012990 vs. NCBI nr
Match: gi|659087126|ref|XP_008444284.1| (PREDICTED: uncharacterized protein LOC103487651 [Cucumis melo])

HSP 1 Score: 204.1 bits (518), Expect = 1.8e-49
Identity = 114/143 (79.72%), Postives = 125/143 (87.41%), Query Frame = 1 

Query: 1   MHSLEKVHDD-SANKDSKVSAELEPSISPNGDFEKENDIAKMNLGNSNALANGLSSMLKN 60
           MH  EK+ DD SAN+DS VSAELE SISP GD ++ ND    NLGNSNALANGLSSML N
Sbjct: 1   MHRPEKLDDDYSANEDSNVSAELETSISPIGDLQEGNDGENKNLGNSNALANGLSSMLIN 60

Query: 61  IMRDFDSKADDTLKSQSQLSFSLDRLTSELDQLLEDAPFPFIMQHALRISSVRKRVLSLN 120
           I+RDFDSKADDTLKSQ+ LS SLDRLT+ELDQLLEDAPFPFIMQHA RIS+VRKRVLSLN
Sbjct: 61  IIRDFDSKADDTLKSQNHLSSSLDRLTTELDQLLEDAPFPFIMQHASRISNVRKRVLSLN 120

Query: 121 SILRSVQRRVDNIDRAISMSNLP 143
           SILR++QRRVDNIDRAI+M NLP
Sbjct: 121 SILRTIQRRVDNIDRAITMGNLP 143

[Close]
BLAST of CmaCh01G012990 vs. NCBI nr
Match: gi|700199763|gb|KGN54921.1| (hypothetical protein Csa_4G598520 [Cucumis sativus])

HSP 1 Score: 154.8 bits (390), Expect = 1.3e-34
Identity = 87/112 (77.68%), Postives = 96/112 (85.71%), Query Frame = 1 

Query: 1   MHSLEKVHDD-SANKDSKVSAELEPSISPNGDFEKENDIAKMNLGNSNALANGLSSMLKN 60
           MHS EK+ DD SAN+DS VSAELE SI+ NGD ++ ND    NLGNSNALANGLSSML N
Sbjct: 1   MHSPEKLDDDYSANEDSNVSAELETSITLNGDLQEGNDSENKNLGNSNALANGLSSMLIN 60

Query: 61  IMRDFDSKADDTLKSQSQLSFSLDRLTSELDQLLEDAPFPFIMQHALRISSV 112
           I+RDFDSKADDTLKSQ+ LS SLDRLT+ELDQLLEDAPFPFIMQHA RIS+V
Sbjct: 61  IIRDFDSKADDTLKSQNHLSSSLDRLTTELDQLLEDAPFPFIMQHASRISNV 112

[Close]
BLAST of CmaCh01G012990 vs. NCBI nr
Match: gi|1009172926|ref|XP_015867538.1| (PREDICTED: uncharacterized protein LOC107405047 isoform X2 [Ziziphus jujuba])

HSP 1 Score: 135.2 bits (339), Expect = 1.0e-28
Identity = 83/153 (54.25%), Postives = 106/153 (69.28%), Query Frame = 1 

Query: 8   HDDSANKDSK-VSAELEPSISPNGDFE--KENDIAKMNLGNSNALANGLSSMLKNIMRDF 67
           H +SA + S+ V+   EP+ +P         N+ A +N G S+ALA GLSSML  ++RDF
Sbjct: 7   HCESAEESSQSVTLNSEPNANPQSSESDTSTNNAANIN-GGSDALAKGLSSMLTTVIRDF 66

Query: 68  DSKADDTLKSQSQLSFSLDRLTSELDQLLEDAPFPFIMQHALRISSVRKRVLSLNSILRS 127
           DSKA DT+ SQ +LSF+LDRL+ ELDQLLEDAP PF+MQHA RIS VRKRV SLNS+L+S
Sbjct: 67  DSKAQDTVGSQERLSFALDRLSRELDQLLEDAPLPFVMQHAARISVVRKRVSSLNSVLKS 126

Query: 128 VQRRVDNIDRAISMSNLPALETEEEREKHQNRC 158
           +QRR+DN+DR +  S L        REK  + C
Sbjct: 127 IQRRLDNMDRMLFASKL--------REKPSSEC 150

[Close]
BLAST of CmaCh01G012990 vs. NCBI nr
Match: gi|1009172924|ref|XP_015867537.1| (PREDICTED: uncharacterized protein LOC107405047 isoform X1 [Ziziphus jujuba])

HSP 1 Score: 134.4 bits (337), Expect = 1.8e-28
Identity = 79/137 (57.66%), Postives = 101/137 (73.72%), Query Frame = 1 

Query: 8   HDDSANKDSK-VSAELEPSISPNGDFE--KENDIAKMNLGNSNALANGLSSMLKNIMRDF 67
           H +SA + S+ V+   EP+ +P         N+ A +N G S+ALA GLSSML  ++RDF
Sbjct: 7   HCESAEESSQSVTLNSEPNANPQSSESDTSTNNAANIN-GGSDALAKGLSSMLTTVIRDF 66

Query: 68  DSKADDTLKSQSQLSFSLDRLTSELDQLLEDAPFPFIMQHALRISSVRKRVLSLNSILRS 127
           DSKA DT+ SQ +LSF+LDRL+ ELDQLLEDAP PF+MQHA RIS VRKRV SLNS+L+S
Sbjct: 67  DSKAQDTVGSQERLSFALDRLSRELDQLLEDAPLPFVMQHAARISVVRKRVSSLNSVLKS 126

Query: 128 VQRRVDNIDRAISMSNL 142
           +QRR+DN+DR +  S L
Sbjct: 127 IQRRLDNMDRMLFASKL 142

The following BLAST results are available for this feature:
BLAST of CmaCh01G012990 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmaCh01G012990 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L459_CUCSA8.8e-3577.68Uncharacterized protein OS=Cucumis sativus GN=Csa_4G598520 PE=4 SV=1[more]
A0A067JMC1_JATCU1.4e-2754.17Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22666 PE=4 SV=1[more]
A0A061GTL6_THECC1.8e-2758.33SNARE-associated protein-related isoform 4 (Fragment) OS=Theobroma cacao GN=TCM_... [more]
A0A061GZD6_THECC1.8e-2758.33SNARE-associated protein-related isoform 2 (Fragment) OS=Theobroma cacao GN=TCM_... [more]
A0A061GSM6_THECC1.8e-2758.33SNARE-associated protein-related isoform 3 (Fragment) OS=Theobroma cacao GN=TCM_... [more]
BLAST of CmaCh01G012990 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G79070.12.1e-2765.96 SNARE-associated protein-related[more]
BLAST of CmaCh01G012990 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449453794|ref|XP_004144641.1|1.8e-4979.02PREDICTED: uncharacterized protein LOC101218072 [Cucumis sativus][more]
gi|659087126|ref|XP_008444284.1|1.8e-4979.72PREDICTED: uncharacterized protein LOC103487651 [Cucumis melo][more]
gi|700199763|gb|KGN54921.1|1.3e-3477.68hypothetical protein Csa_4G598520 [Cucumis sativus][more]
gi|1009172926|ref|XP_015867538.1|1.0e-2854.25PREDICTED: uncharacterized protein LOC107405047 isoform X2 [Ziziphus jujuba][more]
gi|1009172924|ref|XP_015867537.1|1.8e-2857.66PREDICTED: uncharacterized protein LOC107405047 isoform X1 [Ziziphus jujuba][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR017246Snapin
IPR028119Snapin/Pallidin/Snn1
Vocabulary: Biological Process
TermDefinition
GO:0006886intracellular protein transport
Vocabulary: Cellular Component
TermDefinition
GO:0031083BLOC-1 complex
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006886 intracellular protein transport
biological_process GO:0008150 biological_process
cellular_component GO:0031083 BLOC-1 complex
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh01G012990.1CmaCh01G012990.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR017246SnapinPANTHERPTHR31305FAMILY NOT NAMEDcoord: 9..138
score: 9.1
IPR028119Snapin/Pallidin/Snn1PFAMPF14712Snapin_Pallidincoord: 48..132
score: 4.0

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmaCh01G012990Cucsa.059010Cucumber (Gy14) v1cgycmaB0079
CmaCh01G012990Cla023222Watermelon (97103) v1cmawmB459
CmaCh01G012990Csa4G598520Cucumber (Chinese Long) v2cmacuB467
CmaCh01G012990MELO3C010559Melon (DHL92) v3.5.1cmameB448
CmaCh01G012990ClCG11G016330Watermelon (Charleston Gray)cmawcgB390
CmaCh01G012990CSPI04G21470Wild cucumber (PI 183967)cmacpiB469
CmaCh01G012990CmoCh01G013540Cucurbita moschata (Rifu)cmacmoB468
CmaCh01G012990CmoCh09G007370Cucurbita moschata (Rifu)cmacmoB439
CmaCh01G012990Lsi04G018700Bottle gourd (USVL1VR-Ls)cmalsiB427
CmaCh01G012990Cp4.1LG02g02330Cucurbita pepo (Zucchini)cmacpeB490
CmaCh01G012990Cp4.1LG06g05840Cucurbita pepo (Zucchini)cmacpeB511
CmaCh01G012990MELO3C010559.2Melon (DHL92) v3.6.1cmamedB516
CmaCh01G012990CsaV3_4G031800Cucumber (Chinese Long) v3cmacucB0556
CmaCh01G012990Cla97C11G222290Watermelon (97103) v2cmawmbB449
CmaCh01G012990Bhi09G003028Wax gourdcmawgoB0620
CmaCh01G012990CsGy4G020010Cucumber (Gy14) v2cgybcmaB505
CmaCh01G012990Carg20060Silver-seed gourdcarcmaB1447
CmaCh01G012990Carg14772Silver-seed gourdcarcmaB0437
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CmaCh01G012990CmaCh09G007450Cucurbita maxima (Rimu)cmacmaB054
The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh01G012990Cucurbita maxima (Rimu)cmacmaB045
CmaCh01G012990Cucurbita moschata (Rifu)cmacmoB432
CmaCh01G012990Watermelon (Charleston Gray)cmawcgB394
CmaCh01G012990Cucurbita pepo (Zucchini)cmacpeB503