Carg14772 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg14772
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	SNARE-associated protein-related
Location	Cucurbita_argyrosperma_scaffold_048 : 1012360 .. 1012803 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCACAGTCTGGAGAAAGTGCACGATGATTCTGCCAACAAGGACAGCAAAGTCTCTGCTGAATTGGAGCCTTCTATTAGTCCAAATGGTGATATCGAGGAAGAAAATGATATTGCAAATATGAATTTGGGAGACTCTAATGCTCTAGCAAATGGGCTCTCTTCCATGCTTATGAACATCATGAGGGATTTTGACTCCAAAGCTGATGATACTCTTAAAAGCCAAAGCCAGCTTTCATTTTCCCTTGACCGACTTACTTCAGGTATGATTACATTTACTTTGTTTTATTAGTTTTATCATATGAAATAGAATTTCTTCCTTTGTCCAATAATATAGTTTAGGGGAAGTGTATAGGTAAATGATATTCTCTCATAATTTACCTTTTTTCTTGTCATAGATGCAAAAATGAAGCTTCTGAGTTTCATGGTTTTTTCAATGGTATAA

mRNA sequence

ATGCACAGTCTGGAGAAAGTGCACGATGATTCTGCCAACAAGGACAGCAAAGTCTCTGCTGAATTGGAGCCTTCTATTAGTCCAAATGGTGATATCGAGGAAGAAAATGATATTGCAAATATGAATTTGGGAGACTCTAATGCTCTAGCAAATGGGCTCTCTTCCATGCTTATGAACATCATGAGGGATTTTGACTCCAAAGCTGATGATACTCTTAAAAGCCAAAGCCAGCTTTCATTTTCCCTTGACCGACTTACTTCAGATGCAAAAATGAAGCTTCTGAGTTTCATGGTTTTTTCAATGGTATAA

Coding sequence (CDS)

ATGCACAGTCTGGAGAAAGTGCACGATGATTCTGCCAACAAGGACAGCAAAGTCTCTGCTGAATTGGAGCCTTCTATTAGTCCAAATGGTGATATCGAGGAAGAAAATGATATTGCAAATATGAATTTGGGAGACTCTAATGCTCTAGCAAATGGGCTCTCTTCCATGCTTATGAACATCATGAGGGATTTTGACTCCAAAGCTGATGATACTCTTAAAAGCCAAAGCCAGCTTTCATTTTCCCTTGACCGACTTACTTCAGATGCAAAAATGAAGCTTCTGAGTTTCATGGTTTTTTCAATGGTATAA

Protein sequence

MHSLEKVHDDSANKDSKVSAELEPSISPNGDIEEENDIANMNLGDSNALANGLSSMLMNIMRDFDSKADDTLKSQSQLSFSLDRLTSDAKMKLLSFMVFSMV

Homology

[Close]

BLAST of Carg14772 vs. NCBI nr
Match: XP_022940121.1 (uncharacterized protein LOC111445840 isoform X1 [Cucurbita moschata])

HSP 1 Score: 163.3 bits (412), Expect = 4.3e-37
Identity = 87/88 (98.86%), Postives = 88/88 (100.00%), Query Frame = 0


Query: 1  MHSLEKVHDDSANKDSKVSAELEPSISPNGDIEEENDIANMNLGDSNALANGLSSMLMNI 60
          MHSLEKVHDDSANKDSKVSAELEPSISPNGDIEEENDIANMNLGDSNALANGLSSMLMNI
Sbjct: 1  MHSLEKVHDDSANKDSKVSAELEPSISPNGDIEEENDIANMNLGDSNALANGLSSMLMNI 60

Query: 61 MRDFDSKADDTLKSQSQLSFSLDRLTSD 89
          MRDFDSKADDTLKSQSQLSFSLDRLTS+
Sbjct: 61 MRDFDSKADDTLKSQSQLSFSLDRLTSE 88

[Close]

BLAST of Carg14772 vs. NCBI nr
Match: XP_022940122.1 (uncharacterized protein LOC111445840 isoform X2 [Cucurbita moschata])

HSP 1 Score: 163.3 bits (412), Expect = 4.3e-37
Identity = 87/88 (98.86%), Postives = 88/88 (100.00%), Query Frame = 0


Query: 1  MHSLEKVHDDSANKDSKVSAELEPSISPNGDIEEENDIANMNLGDSNALANGLSSMLMNI 60
          MHSLEKVHDDSANKDSKVSAELEPSISPNGDIEEENDIANMNLGDSNALANGLSSMLMNI
Sbjct: 1  MHSLEKVHDDSANKDSKVSAELEPSISPNGDIEEENDIANMNLGDSNALANGLSSMLMNI 60

Query: 61 MRDFDSKADDTLKSQSQLSFSLDRLTSD 89
          MRDFDSKADDTLKSQSQLSFSLDRLTS+
Sbjct: 61 MRDFDSKADDTLKSQSQLSFSLDRLTSE 88

[Close]

BLAST of Carg14772 vs. NCBI nr
Match: XP_023523877.1 (uncharacterized protein LOC111787988 [Cucurbita pepo subsp. pepo] >XP_023523879.1 uncharacterized protein LOC111787988 [Cucurbita pepo subsp. pepo] >XP_023523880.1 uncharacterized protein LOC111787988 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 161.8 bits (408), Expect = 1.3e-36
Identity = 86/88 (97.73%), Postives = 88/88 (100.00%), Query Frame = 0


Query: 1  MHSLEKVHDDSANKDSKVSAELEPSISPNGDIEEENDIANMNLGDSNALANGLSSMLMNI 60
          MHSLEKVHDDSANKDSKVSAELEPSISPNGDIEEEN+IANMNLGDSNALANGLSSMLMNI
Sbjct: 1  MHSLEKVHDDSANKDSKVSAELEPSISPNGDIEEENEIANMNLGDSNALANGLSSMLMNI 60

Query: 61 MRDFDSKADDTLKSQSQLSFSLDRLTSD 89
          MRDFDSKADDTLKSQSQLSFSLDRLTS+
Sbjct: 61 MRDFDSKADDTLKSQSQLSFSLDRLTSE 88

[Close]

BLAST of Carg14772 vs. NCBI nr
Match: XP_022981117.1 (uncharacterized protein LOC111480361 [Cucurbita maxima] >XP_022981118.1 uncharacterized protein LOC111480361 [Cucurbita maxima] >XP_022981119.1 uncharacterized protein LOC111480361 [Cucurbita maxima])

HSP 1 Score: 153.7 bits (387), Expect = 3.4e-34
Identity = 82/88 (93.18%), Postives = 85/88 (96.59%), Query Frame = 0


Query: 1  MHSLEKVHDDSANKDSKVSAELEPSISPNGDIEEENDIANMNLGDSNALANGLSSMLMNI 60
          MHSLEKVHDDSANKDSKVSAELEPSISPNGD E+ENDIA MNLG+SNALANGLSSML NI
Sbjct: 1  MHSLEKVHDDSANKDSKVSAELEPSISPNGDFEKENDIAKMNLGNSNALANGLSSMLKNI 60

Query: 61 MRDFDSKADDTLKSQSQLSFSLDRLTSD 89
          MRDFDSKADDTLKSQSQLSFSLDRLTS+
Sbjct: 61 MRDFDSKADDTLKSQSQLSFSLDRLTSE 88

[Close]

BLAST of Carg14772 vs. NCBI nr
Match: XP_022936774.1 (uncharacterized protein LOC111443260 isoform X2 [Cucurbita moschata] >XP_022936775.1 uncharacterized protein LOC111443260 isoform X2 [Cucurbita moschata])

HSP 1 Score: 124.4 bits (311), Expect = 2.2e-25
Identity = 68/88 (77.27%), Postives = 78/88 (88.64%), Query Frame = 0


Query: 1  MHSLEKVHDDSANKDSKVSAELEPSISPNGDIEEENDIANMNLGDSNALANGLSSMLMNI 60
          MHS EKV DD AN+DS VS ELE SIS NGD++EEND+AN NL +SNALANGLSSML+NI
Sbjct: 1  MHSPEKVLDDPANEDSSVSVELETSISRNGDLKEENDLANTNLENSNALANGLSSMLINI 60

Query: 61 MRDFDSKADDTLKSQSQLSFSLDRLTSD 89
          +RDFDSKADDTLKSQSQLS SLDR+T++
Sbjct: 61 IRDFDSKADDTLKSQSQLSSSLDRITTE 88

[Close]

BLAST of Carg14772 vs. TAIR10
Match: AT1G79070.1 (SNARE-associated protein-related)

HSP 1 Score: 49.7 bits (117), Expect = 1.3e-06
Identity = 26/45 (57.78%), Postives = 34/45 (75.56%), Query Frame = 0


Query: 44 GDSNALANGLSSMLMNIMRDFDSKADDTLKSQSQLSFSLDRLTSD 89
          G   A+A GLS+ML ++++DFDSKA DTL SQ +LS SLDRL  +
Sbjct: 32 GGGEAMARGLSAMLESVIKDFDSKALDTLNSQDELSGSLDRLVQE 76

[Close]

BLAST of Carg14772 vs. TrEMBL
Match: tr|A0A0A0L459|A0A0A0L459_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G598520 PE=4 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 4.0e-23
Identity = 66/89 (74.16%), Postives = 77/89 (86.52%), Query Frame = 0


Query: 1  MHSLEKVHDD-SANKDSKVSAELEPSISPNGDIEEENDIANMNLGDSNALANGLSSMLMN 60
          MHS EK+ DD SAN+DS VSAELE SI+ NGD++E ND  N NLG+SNALANGLSSML+N
Sbjct: 1  MHSPEKLDDDYSANEDSNVSAELETSITLNGDLQEGNDSENKNLGNSNALANGLSSMLIN 60

Query: 61 IMRDFDSKADDTLKSQSQLSFSLDRLTSD 89
          I+RDFDSKADDTLKSQ+ LS SLDRLT++
Sbjct: 61 IIRDFDSKADDTLKSQNHLSSSLDRLTTE 89

[Close]

BLAST of Carg14772 vs. TrEMBL
Match: tr|A0A1S3BAU4|A0A1S3BAU4_CUCME (uncharacterized protein LOC103487651 OS=Cucumis melo OX=3656 GN=LOC103487651 PE=4 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 8.9e-23
Identity = 66/89 (74.16%), Postives = 76/89 (85.39%), Query Frame = 0


Query: 1  MHSLEKVHDD-SANKDSKVSAELEPSISPNGDIEEENDIANMNLGDSNALANGLSSMLMN 60
          MH  EK+ DD SAN+DS VSAELE SISP GD++E ND  N NLG+SNALANGLSSML+N
Sbjct: 1  MHRPEKLDDDYSANEDSNVSAELETSISPIGDLQEGNDGENKNLGNSNALANGLSSMLIN 60

Query: 61 IMRDFDSKADDTLKSQSQLSFSLDRLTSD 89
          I+RDFDSKADDTLKSQ+ LS SLDRLT++
Sbjct: 61 IIRDFDSKADDTLKSQNHLSSSLDRLTTE 89

[Close]

BLAST of Carg14772 vs. TrEMBL
Match: tr|A0A2C9VRM9|A0A2C9VRM9_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_06G171200 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 2.0e-06
Identity = 39/88 (44.32%), Postives = 54/88 (61.36%), Query Frame = 0


Query: 11 SANKDSKVSAELEPSISPNGDIEEENDIA----------NMNLGDSNALANGLSSMLMNI 70
          S   +  VS ++ PS+S NG+ +   +I           N N   S+ALA GLS+ML +I
Sbjct: 11 SEENNVAVSVQIAPSVSSNGNNDPSENIPQGHQSEPNADNENNRSSDALAKGLSTMLASI 70

Query: 71 MRDFDSKADDTLKSQSQLSFSLDRLTSD 89
          +RDFDSKA DTLKSQ  L+ ++DRLT +
Sbjct: 71 IRDFDSKAQDTLKSQDHLNCAIDRLTRE 98

[Close]

BLAST of Carg14772 vs. TrEMBL
Match: tr|A0A1Q3C3S8|A0A1Q3C3S8_CEPFO (Uncharacterized protein (Fragment) OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_18364 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 4.4e-06
Identity = 35/57 (61.40%), Postives = 43/57 (75.44%), Query Frame = 0


Query: 46 SNALANGLSSMLMNIMRDFDSKADDTLKSQSQLSFSLDRLTSDAKMKL----LSFMV 99
          S+ALA GLS+ML N+++DFDSKA+DTLKSQ QLS S+DRLT +    L    L FMV
Sbjct: 27 SDALAKGLSTMLTNVIKDFDSKAEDTLKSQHQLSLSIDRLTRELDQLLDDAPLPFMV 83

[Close]

BLAST of Carg14772 vs. TrEMBL
Match: tr|A0A067JMC1|A0A067JMC1_JATCU (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_22666 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 1.3e-05
Identity = 40/90 (44.44%), Postives = 57/90 (63.33%), Query Frame = 0


Query: 10 DSANKDSK-VSAELEPSISPNG-----DIEEENDIANMNLGD-----SNALANGLSSMLM 69
          DS ++ S  +S E E ++S NG     +I  +   +  N  D     S+ALA GLS+ML 
Sbjct: 9  DSTDQSSVCISVEAERTVSSNGNKDSNEINSQEHKSKTNTEDEINKSSDALAKGLSTMLA 68

Query: 70 NIMRDFDSKADDTLKSQSQLSFSLDRLTSD 89
          N++RDFDSKA +TLKSQ QL+ ++DRLT +
Sbjct: 69 NVIRDFDSKAQETLKSQDQLNSAIDRLTRE 98

The following BLAST results are available for this feature:

BLAST of Carg14772 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022940121.1	4.3e-37	98.86	uncharacterized protein LOC111445840 isoform X1 [Cucurbita moschata]	[more]
XP_022940122.1	4.3e-37	98.86	uncharacterized protein LOC111445840 isoform X2 [Cucurbita moschata]	[more]
XP_023523877.1	1.3e-36	97.73	uncharacterized protein LOC111787988 [Cucurbita pepo subsp. pepo] >XP_023523879....	[more]
XP_022981117.1	3.4e-34	93.18	uncharacterized protein LOC111480361 [Cucurbita maxima] >XP_022981118.1 uncharac...	[more]
XP_022936774.1	2.2e-25	77.27	uncharacterized protein LOC111443260 isoform X2 [Cucurbita moschata] >XP_0229367...	[more]

BLAST of Carg14772 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G79070.1	1.3e-06	57.78	SNARE-associated protein-related	[more]

BLAST of Carg14772 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg14772 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0L459\|A0A0A0L459_CUCSA	4.0e-23	74.16	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G598520 PE=4 SV=1	[more]
tr\|A0A1S3BAU4\|A0A1S3BAU4_CUCME	8.9e-23	74.16	uncharacterized protein LOC103487651 OS=Cucumis melo OX=3656 GN=LOC103487651 PE=...	[more]
tr\|A0A2C9VRM9\|A0A2C9VRM9_MANES	2.0e-06	44.32	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_06G171200 PE=4 SV=...	[more]
tr\|A0A1Q3C3S8\|A0A1Q3C3S8_CEPFO	4.4e-06	61.40	Uncharacterized protein (Fragment) OS=Cephalotus follicularis OX=3775 GN=CFOL_v3...	[more]
tr\|A0A067JMC1\|A0A067JMC1_JATCU	1.3e-05	44.44	Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_22666 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg14772-RA	Carg14772-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..37
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..17

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg14772	Cla023222	Watermelon (97103) v1	carwmB0303
Carg14772	Csa4G598520	Cucumber (Chinese Long) v2	carcuB0338
Carg14772	MELO3C010559	Melon (DHL92) v3.5.1	carmeB0318
Carg14772	ClCG11G016330	Watermelon (Charleston Gray)	carwcgB0304
Carg14772	CSPI04G21470	Wild cucumber (PI 183967)	carcpiB0344
Carg14772	Cucsa.059010	Cucumber (Gy14) v1	carcgyB0364
Carg14772	CmaCh01G012990	Cucurbita maxima (Rimu)	carcmaB0437
Carg14772	CmaCh09G007450	Cucurbita maxima (Rimu)	carcmaB0435
Carg14772	CmoCh09G007370	Cucurbita moschata (Rifu)	carcmoB0429
Carg14772	CmoCh01G013540	Cucurbita moschata (Rifu)	carcmoB0430
Carg14772	Lsi04G018700	Bottle gourd (USVL1VR-Ls)	carlsiB285
Carg14772	Cp4.1LG02g02330	Cucurbita pepo (Zucchini)	carcpeB0431
Carg14772	CsGy4G020010	Cucumber (Gy14) v2	carcgybB0322
Carg14772	MELO3C010559.2	Melon (DHL92) v3.6.1	carmedB0327
Carg14772	CsaV3_4G031800	Cucumber (Chinese Long) v3	carcucB0343
Carg14772	Cla97C11G222290	Watermelon (97103) v2	carwmbB0320
Carg14772	Bhi09G003028	Wax gourd	carwgoB0396

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg14772	Silver-seed gourd	carcarB340
Carg14772	Cucurbita maxima (Rimu)	carcmaB0432
Carg14772	Cucurbita moschata (Rifu)	carcmoB0426
Carg14772	Cucurbita pepo (Zucchini)	carcpeB0432
Carg14772	Cucurbita pepo (Zucchini)	carcpeB0435