CmoCh01G005140 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh01G005140
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionMYB transcription factor
LocationCmo_Chr01 : 2470433 .. 2471014 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTACCAAAAGCGACATGAATTCAGGCACCAACGCGAAGGCTTGTGCGAGAGGGCACTGGAGGCCAGCAGAGGACGCCAAGCTAAGGGAGCTAGTCGCCCTATACGGCCCCCAAAACTGGAACCTCATCGCCGAGAAACTGGACGGCAGATCTGGTAGTGTGGTGGTTTAAAATCACAAGTTTTTAAGGTAATTCACTGACATGGGGGTTGTTGTTTTGGACAAGATAGGTAAGAGCTGCAGGCTGCGATGGTTCAACCAGCTGGACCCGAGGATCAACCGACGAGCCTTCACACAAGAGGAAGAGGAGAGGCTAATGCAGGCGCATAGAGTTCACGGCAACAAATGGGCCATGATTGCCAGGCTGTTTCCTGGGCGCACTGATAATGGTGTCAAGAATCATTGGCATGTCATCATGGCTAGAAAATGCAGACACCATTTTGGTGCTGGAAGGCGGCGCAGGAGAACGACAACCTCGGATGAAGATTCAGCTACAAATCAACCGCCGCCGTTTATGGACCGGCGTGTTGAACCGGCGTTGTTCTTCGACTTTCTTGGAGTAGGAGGTGGACCCACATGA

mRNA sequence

ATGGCTACCAAAAGCGACATGAATTCAGGCACCAACGCGAAGGCTTGTGCGAGAGGGCACTGGAGGCCAGCAGAGGACGCCAAGCTAAGGGAGCTAGTCGCCCTATACGGCCCCCAAAACTGGAACCTCATCGCCGAGAAACTGGACGGCAGATCTGGTAAGAGCTGCAGGCTGCGATGGTTCAACCAGCTGGACCCGAGGATCAACCGACGAGCCTTCACACAAGAGGAAGAGGAGAGGCTAATGCAGGCGCATAGAGTTCACGGCAACAAATGGGCCATGATTGCCAGGCTGTTTCCTGGGCGCACTGATAATGGTGTCAAGAATCATTGGCATGTCATCATGGCTAGAAAATGCAGACACCATTTTGGTGCTGGAAGGCGGCGCAGGAGAACGACAACCTCGGATGAAGATTCAGCTACAAATCAACCGCCGCCGTTTATGGACCGGCGTGTTGAACCGGCGTTGTTCTTCGACTTTCTTGGAGTAGGAGGTGGACCCACATGA

Coding sequence (CDS)

ATGGCTACCAAAAGCGACATGAATTCAGGCACCAACGCGAAGGCTTGTGCGAGAGGGCACTGGAGGCCAGCAGAGGACGCCAAGCTAAGGGAGCTAGTCGCCCTATACGGCCCCCAAAACTGGAACCTCATCGCCGAGAAACTGGACGGCAGATCTGGTAAGAGCTGCAGGCTGCGATGGTTCAACCAGCTGGACCCGAGGATCAACCGACGAGCCTTCACACAAGAGGAAGAGGAGAGGCTAATGCAGGCGCATAGAGTTCACGGCAACAAATGGGCCATGATTGCCAGGCTGTTTCCTGGGCGCACTGATAATGGTGTCAAGAATCATTGGCATGTCATCATGGCTAGAAAATGCAGACACCATTTTGGTGCTGGAAGGCGGCGCAGGAGAACGACAACCTCGGATGAAGATTCAGCTACAAATCAACCGCCGCCGTTTATGGACCGGCGTGTTGAACCGGCGTTGTTCTTCGACTTTCTTGGAGTAGGAGGTGGACCCACATGA
Homology
[Close]
BLAST of CmoCh01G005140 vs. Swiss-Prot
Match: MYB44_ARATH (Transcription factor MYB44 OS=Arabidopsis thaliana GN=MYB44 PE=2 SV=1)

HSP 1 Score: 138.3 bits (347), Expect = 7.9e-32
Identity = 59/102 (57.84%), Postives = 74/102 (72.55%), Query Frame = 1 

Query: 18  RGHWRPAEDAKLRELVALYGPQNWNLIAEKLDGRSGKSCRLRWFNQLDPRINRRAFTQEE 77
           +G W P ED +LR LV  YGP+NW +I++ + GRSGKSCRLRW NQL P++  R F+ EE
Sbjct: 6   KGPWSPEEDEQLRRLVVKYGPRNWTVISKSIPGRSGKSCRLRWCNQLSPQVEHRPFSAEE 65

Query: 78  EERLMQAHRVHGNKWAMIARLFPGRTDNGVKNHWHVIMARKC 120
           +E + +AH   GNKWA IARL  GRTDN VKNHW+  + RKC
Sbjct: 66  DETIARAHAQFGNKWATIARLLNGRTDNAVKNHWNSTLKRKC 107

[Close]
BLAST of CmoCh01G005140 vs. Swiss-Prot
Match: MYBB_XENLA (Myb-related protein B OS=Xenopus laevis GN=mybl2 PE=2 SV=2)

HSP 1 Score: 122.9 bits (307), Expect = 3.4e-27
Identity = 53/101 (52.48%), Postives = 72/101 (71.29%), Query Frame = 1 

Query: 18  RGHWRPAEDAKLRELVALYGPQNWNLIAEKLDGRSGKSCRLRWFNQLDPRINRRAFTQEE 77
           +G W   ED K+ ELV  YG ++W LIA++L GR GK CR RW N L+P + + ++T+EE
Sbjct: 83  KGPWTKEEDEKVIELVKKYGTKHWTLIAKQLRGRMGKQCRERWHNHLNPEVKKSSWTEEE 142

Query: 78  EERLMQAHRVHGNKWAMIARLFPGRTDNGVKNHWHVIMARK 119
           +  + QAH+V GN+WA IA+L PGRTDN VKNHW+  + RK
Sbjct: 143 DRIICQAHKVLGNRWAEIAKLLPGRTDNAVKNHWNSTIKRK 183

[Close]
BLAST of CmoCh01G005140 vs. Swiss-Prot
Match: MB3R1_ARATH (Myb-related protein 3R-1 OS=Arabidopsis thaliana GN=MYB3R-1 PE=2 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 7.6e-27
Identity = 50/109 (45.87%), Postives = 75/109 (68.81%), Query Frame = 1 

Query: 18  RGHWRPAEDAKLRELVALYGPQNWNLIAEKLDGRSGKSCRLRWFNQLDPRINRRAFTQEE 77
           +G W   ED  + +LV  YGP+ W+ I++ L GR GK CR RW N L+P IN+ A+TQEE
Sbjct: 87  KGPWSKEEDNTIIDLVEKYGPKKWSTISQHLPGRIGKQCRERWHNHLNPGINKNAWTQEE 146

Query: 78  EERLMQAHRVHGNKWAMIARLFPGRTDNGVKNHWHVIMARKCRHHFGAG 127
           E  L++AH+++GNKWA + +  PGR+DN +KNHW+  + +K   ++ +G
Sbjct: 147 ELTLIRAHQIYGNKWAELMKFLPGRSDNSIKNHWNSSVKKKLDSYYASG 195

[Close]
BLAST of CmoCh01G005140 vs. Swiss-Prot
Match: MYB_MOUSE (Transcriptional activator Myb OS=Mus musculus GN=Myb PE=1 SV=2)

HSP 1 Score: 121.3 bits (303), Expect = 1.0e-26
Identity = 51/101 (50.50%), Postives = 71/101 (70.30%), Query Frame = 1 

Query: 18  RGHWRPAEDAKLRELVALYGPQNWNLIAEKLDGRSGKSCRLRWFNQLDPRINRRAFTQEE 77
           +G W   ED ++ ELV  YGP+ W++IA+ L GR GK CR RW N L+P + + ++T+EE
Sbjct: 92  KGPWTKEEDQRVIELVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEE 151

Query: 78  EERLMQAHRVHGNKWAMIARLFPGRTDNGVKNHWHVIMARK 119
           +  + QAH+  GN+WA IA+L PGRTDN +KNHW+  M RK
Sbjct: 152 DRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRK 192

[Close]
BLAST of CmoCh01G005140 vs. Swiss-Prot
Match: MYB_HUMAN (Transcriptional activator Myb OS=Homo sapiens GN=MYB PE=1 SV=2)

HSP 1 Score: 121.3 bits (303), Expect = 1.0e-26
Identity = 51/101 (50.50%), Postives = 71/101 (70.30%), Query Frame = 1 

Query: 18  RGHWRPAEDAKLRELVALYGPQNWNLIAEKLDGRSGKSCRLRWFNQLDPRINRRAFTQEE 77
           +G W   ED ++ ELV  YGP+ W++IA+ L GR GK CR RW N L+P + + ++T+EE
Sbjct: 92  KGPWTKEEDQRVIELVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEE 151

Query: 78  EERLMQAHRVHGNKWAMIARLFPGRTDNGVKNHWHVIMARK 119
           +  + QAH+  GN+WA IA+L PGRTDN +KNHW+  M RK
Sbjct: 152 DRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRK 192

[Close]
BLAST of CmoCh01G005140 vs. TrEMBL
Match: A0A0E0C0M6_9ORYZ (Uncharacterized protein OS=Oryza meridionalis PE=4 SV=1)

HSP 1 Score: 229.9 bits (585), Expect = 2.2e-57
Identity = 106/137 (77.37%), Postives = 117/137 (85.40%), Query Frame = 1 

Query: 10  GTNAKACARGHWRPAEDAKLRELVALYGPQNWNLIAEKLDGRSGKSCRLRWFNQLDPRIN 69
           G   K CARGHWRPAEDAKL++LVA YGPQNWNLIAEKLDGRSGKSCRLRWFNQLDPRIN
Sbjct: 42  GVQGKLCARGHWRPAEDAKLKDLVAQYGPQNWNLIAEKLDGRSGKSCRLRWFNQLDPRIN 101

Query: 70  RRAFTQEEEERLMQAHRVHGNKWAMIARLFPGRTDNGVKNHWHVIMARKCRHHFGAGRRR 129
           RRAFT+EEEERLM AHR +GNKWA+IARLFPGRTDN VKNHWHV+MAR+ R   GA RRR
Sbjct: 102 RRAFTEEEEERLMAAHRAYGNKWALIARLFPGRTDNAVKNHWHVLMARRHREQSGAFRRR 161

Query: 130 RRTTTSDEDSATNQPPP 147
           + +++S   SA   PPP
Sbjct: 162 KPSSSSSSASAAPAPPP 178

[Close]
BLAST of CmoCh01G005140 vs. TrEMBL
Match: A0A0D9UZK3_9ORYZ (Uncharacterized protein OS=Leersia perrieri PE=4 SV=1)

HSP 1 Score: 227.3 bits (578), Expect = 1.4e-56
Identity = 104/142 (73.24%), Postives = 120/142 (84.51%), Query Frame = 1 

Query: 4   KSDMNSGTNAKACARGHWRPAEDAKLRELVALYGPQNWNLIAEKLDGRSGKSCRLRWFNQ 63
           + ++++    K CARGHWRPAEDAKL++LVA +GPQNWNLIA+KLDGRSGKSCRLRWFNQ
Sbjct: 23  EEEVSAPAAGKLCARGHWRPAEDAKLKDLVAQFGPQNWNLIADKLDGRSGKSCRLRWFNQ 82

Query: 64  LDPRINRRAFTQEEEERLMQAHRVHGNKWAMIARLFPGRTDNGVKNHWHVIMARKCRHHF 123
           LDPRINRRAFT+EEEERLM AHR +GNKWA+IARLFPGRTDN VKNHWHV+MAR+ R H 
Sbjct: 83  LDPRINRRAFTEEEEERLMAAHRAYGNKWALIARLFPGRTDNAVKNHWHVLMARRHREHS 142

Query: 124 GAGRRRRRTTTSDEDSATNQPP 146
           GA RRR  TTT    S+ + PP
Sbjct: 143 GAFRRRSTTTTKAPPSSASPPP 164

[Close]
BLAST of CmoCh01G005140 vs. TrEMBL
Match: A0A0D9Y6N7_9ORYZ (Uncharacterized protein OS=Oryza glumipatula PE=4 SV=1)

HSP 1 Score: 226.9 bits (577), Expect = 1.9e-56
Identity = 104/137 (75.91%), Postives = 117/137 (85.40%), Query Frame = 1 

Query: 10  GTNAKACARGHWRPAEDAKLRELVALYGPQNWNLIAEKLDGRSGKSCRLRWFNQLDPRIN 69
           G + K CARGHWRPAEDAKL++LVA YGPQNWNLIAEKLDGRSGKSCRLRWFNQLDPRIN
Sbjct: 41  GVHGKLCARGHWRPAEDAKLKDLVAQYGPQNWNLIAEKLDGRSGKSCRLRWFNQLDPRIN 100

Query: 70  RRAFTQEEEERLMQAHRVHGNKWAMIARLFPGRTDNGVKNHWHVIMARKCRHHFGAGRRR 129
           RRAFT+EEEERLM AHR +GNKWA+IARLFPGRTDN VKNHWHV+MAR+ R   GA RRR
Sbjct: 101 RRAFTEEEEERLMAAHRAYGNKWALIARLFPGRTDNAVKNHWHVLMARRHREQSGAFRRR 160

Query: 130 RRTTTSDEDSATNQPPP 147
           + +++S   +    PPP
Sbjct: 161 KPSSSSASPAPAPPPPP 177

[Close]
BLAST of CmoCh01G005140 vs. TrEMBL
Match: A0A067LAW8_JATCU (MYB family protein OS=Jatropha curcas GN=JCGZ_15621 PE=4 SV=1)

HSP 1 Score: 226.5 bits (576), Expect = 2.4e-56
Identity = 112/162 (69.14%), Postives = 123/162 (75.93%), Query Frame = 1 

Query: 1   MATKSDMNSGTNAKACARGHWRPAEDAKLRELVALYGPQNWNLIAEKLDGRSGKSCRLRW 60
           M +  + +S   +K CARGHWRPAED KL+ELVALYGPQNWNLIAEKL+GRSGKSCRLRW
Sbjct: 107 MISGKETDSSGQSKLCARGHWRPAEDTKLKELVALYGPQNWNLIAEKLEGRSGKSCRLRW 166

Query: 61  FNQLDPRINRRAFTQEEEERLMQAHRVHGNKWAMIARLFPGRTDNGVKNHWHVIMARKCR 120
           FNQLDPRINRRAFT+EEEERLMQAHR++GNKWAMIARLFPGRTDN VKNHWHVIMARK R
Sbjct: 167 FNQLDPRINRRAFTEEEEERLMQAHRLYGNKWAMIARLFPGRTDNAVKNHWHVIMARKYR 226

Query: 121 HHFGAGRR--------RRRTTTSDEDSATNQPPPFMDRRVEP 155
               A RR        RR   TS   + T     F+ R  EP
Sbjct: 227 EQSTAYRRRKLSQSVYRRIEETSTTTTTTTTTTSFISRNPEP 268

[Close]
BLAST of CmoCh01G005140 vs. TrEMBL
Match: V7CP20_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_002G170500g PE=4 SV=1)

HSP 1 Score: 226.5 bits (576), Expect = 2.4e-56
Identity = 113/155 (72.90%), Postives = 126/155 (81.29%), Query Frame = 1 

Query: 8   NSGT-NAKACARGHWRPAEDAKLRELVALYGPQNWNLIAEKLDGRSGKSCRLRWFNQLDP 67
           NSG+ ++K CARGHWRPAED+KL+ELVALYGPQNWNLIAEKL+GRSGKSCRLRWFNQLDP
Sbjct: 125 NSGSGHSKLCARGHWRPAEDSKLKELVALYGPQNWNLIAEKLEGRSGKSCRLRWFNQLDP 184

Query: 68  RINRRAFTQEEEERLMQAHRVHGNKWAMIARLFPGRTDNGVKNHWHVIMARKCRHHFGAG 127
           RINRRAF++EEEERLMQAHR++GNKWAMIARLFPGRTDN VKNHWHVIMARK R    A 
Sbjct: 185 RINRRAFSEEEEERLMQAHRIYGNKWAMIARLFPGRTDNAVKNHWHVIMARKYREQSSAY 244

Query: 128 RRRR-----------RTTTS----DEDSATNQPPP 147
           RRRR            TT+S    D  +A  +PPP
Sbjct: 245 RRRRLSQSVYRRVEENTTSSNVSRDTATAGTEPPP 279

[Close]
BLAST of CmoCh01G005140 vs. TAIR10
Match: AT1G26780.2 (AT1G26780.2 myb domain protein 117)

HSP 1 Score: 215.7 bits (548), Expect = 2.2e-56
Identity = 98/123 (79.67%), Postives = 108/123 (87.80%), Query Frame = 1 

Query: 8   NSGTNAKACARGHWRPAEDAKLRELVALYGPQNWNLIAEKLDGRSGKSCRLRWFNQLDPR 67
           +S +      RGHWRPAED KL+ELV++YGPQNWNLIAEKL GRSGKSCRLRWFNQLDPR
Sbjct: 88  SSSSKPSVLGRGHWRPAEDVKLKELVSIYGPQNWNLIAEKLQGRSGKSCRLRWFNQLDPR 147

Query: 68  INRRAFTQEEEERLMQAHRVHGNKWAMIARLFPGRTDNGVKNHWHVIMARKCRHHFGAGR 127
           INRRAFT+EEEERLMQAHR++GNKWAMIARLFPGRTDN VKNHWHV+MARK R H  A R
Sbjct: 148 INRRAFTEEEEERLMQAHRLYGNKWAMIARLFPGRTDNSVKNHWHVVMARKYREHSSAYR 207

Query: 128 RRR 131
           RR+
Sbjct: 208 RRK 210

[Close]
BLAST of CmoCh01G005140 vs. TAIR10
Match: AT1G69560.1 (AT1G69560.1 myb domain protein 105)

HSP 1 Score: 213.0 bits (541), Expect = 1.4e-55
Identity = 105/141 (74.47%), Postives = 116/141 (82.27%), Query Frame = 1 

Query: 10  GTNAKAC-ARGHWRPAEDAKLRELVALYGPQNWNLIAEKLDGRSGKSCRLRWFNQLDPRI 69
           G ++KA  +RGHWRPAED KL+ELVA+YGPQNWNLIAEKL GRSGKSCRLRWFNQLDPRI
Sbjct: 98  GHSSKASVSRGHWRPAEDTKLKELVAVYGPQNWNLIAEKLQGRSGKSCRLRWFNQLDPRI 157

Query: 70  NRRAFTQEEEERLMQAHRVHGNKWAMIARLFPGRTDNGVKNHWHVIMARKCRHHFGAGRR 129
           NRRAFT+EEEERLMQAHR++GNKWAMIARLFPGRTDN VKNHWHVIMARK R    +  R
Sbjct: 158 NRRAFTEEEEERLMQAHRLYGNKWAMIARLFPGRTDNSVKNHWHVIMARKFREQ-SSSYR 217

Query: 130 RRRTTTSDEDSATNQPPPFMD 150
           RR+T  S +      P  F D
Sbjct: 218 RRKTMVSLKPLINPNPHIFND 237

[Close]
BLAST of CmoCh01G005140 vs. TAIR10
Match: AT5G17800.1 (AT5G17800.1 myb domain protein 56)

HSP 1 Score: 201.1 bits (510), Expect = 5.6e-52
Identity = 96/145 (66.21%), Postives = 111/145 (76.55%), Query Frame = 1 

Query: 9   SGTNAKACARGHWRPAEDAKLRELVALYGPQNWNLIAEKLDGRSGKSCRLRWFNQLDPRI 68
           SG N K C+RGHWRP EDAKL+ELVA +GPQNWNLI+  L GRSGKSCRLRWFNQLDPRI
Sbjct: 84  SGINTKVCSRGHWRPTEDAKLKELVAQFGPQNWNLISNHLLGRSGKSCRLRWFNQLDPRI 143

Query: 69  NRRAFTQEEEERLMQAHRVHGNKWAMIARLFPGRTDNGVKNHWHVIMARKCRHHFGAGRR 128
           N+RAFT+EEE RL+ AHR +GNKWA+I+RLFPGRTDN VKNHWHVIMAR+ R      +R
Sbjct: 144 NKRAFTEEEEFRLLAAHRAYGNKWALISRLFPGRTDNAVKNHWHVIMARRTRE----SQR 203

Query: 129 RRRTTTSDEDSATNQPPPFMDRRVE 154
           +R+           QPPP + R  E
Sbjct: 204 QRQ-----------QPPPTLSRDAE 213

[Close]
BLAST of CmoCh01G005140 vs. TAIR10
Match: AT1G17950.1 (AT1G17950.1 myb domain protein 52)

HSP 1 Score: 190.7 bits (483), Expect = 7.5e-49
Identity = 82/105 (78.10%), Postives = 93/105 (88.57%), Query Frame = 1 

Query: 16  CARGHWRPAEDAKLRELVALYGPQNWNLIAEKLDGRSGKSCRLRWFNQLDPRINRRAFTQ 75
           C+RGHWRPAED KLRELV  +GP NWN IA+KL GRSGKSCRLRWFNQLDPRINR  FT+
Sbjct: 3   CSRGHWRPAEDEKLRELVEQFGPHNWNAIAQKLSGRSGKSCRLRWFNQLDPRINRNPFTE 62

Query: 76  EEEERLMQAHRVHGNKWAMIARLFPGRTDNGVKNHWHVIMARKCR 121
           EEEERL+ +HR+HGN+W++IAR FPGRTDN VKNHWHVIMAR+ R
Sbjct: 63  EEEERLLASHRIHGNRWSVIARFFPGRTDNAVKNHWHVIMARRGR 107

[Close]
BLAST of CmoCh01G005140 vs. TAIR10
Match: AT1G73410.1 (AT1G73410.1 myb domain protein 54)

HSP 1 Score: 190.3 bits (482), Expect = 9.8e-49
Identity = 89/128 (69.53%), Postives = 101/128 (78.91%), Query Frame = 1 

Query: 16  CARGHWRPAEDAKLRELVALYGPQNWNLIAEKLDGRSGKSCRLRWFNQLDPRINRRAFTQ 75
           C+RGHWRPAED KL++LV  YGP NWN IA KL GRSGKSCRLRWFNQLDPRINR  FT+
Sbjct: 4   CSRGHWRPAEDEKLKDLVEQYGPHNWNAIALKLPGRSGKSCRLRWFNQLDPRINRNPFTE 63

Query: 76  EEEERLMQAHRVHGNKWAMIARLFPGRTDNGVKNHWHVIMARKCRHHFGAGRRRRRTTTS 135
           EEEERL+ AHR+HGN+W++IARLFPGRTDN VKNHWHVIMAR+ R      R    TT+S
Sbjct: 64  EEEERLLAAHRIHGNRWSIIARLFPGRTDNAVKNHWHVIMARRTR-QTSKPRLLPSTTSS 123

Query: 136 DEDSATNQ 144
               A+ Q
Sbjct: 124 SSLMASEQ 130

[Close]
BLAST of CmoCh01G005140 vs. NCBI nr
Match: gi|1021027370|gb|KZM85157.1| (hypothetical protein DCAR_027421 [Daucus carota subsp. sativus])

HSP 1 Score: 227.6 bits (579), Expect = 1.6e-56
Identity = 107/146 (73.29%), Postives = 120/146 (82.19%), Query Frame = 1 

Query: 13  AKACARGHWRPAEDAKLRELVALYGPQNWNLIAEKLDGRSGKSCRLRWFNQLDPRINRRA 72
           +K CARGHWRPAEDAKLRELVALYGPQNWNLIA+KL GRSGKSCRLRWFNQLDPRINRRA
Sbjct: 85  SKLCARGHWRPAEDAKLRELVALYGPQNWNLIADKLQGRSGKSCRLRWFNQLDPRINRRA 144

Query: 73  FTQEEEERLMQAHRVHGNKWAMIARLFPGRTDNGVKNHWHVIMARKCRHHFGAGRRRRRT 132
           F++EEEERLM AHR++GNKWAMIARLFPGRTDN VKNHWHVIMARK R    A RRR+  
Sbjct: 145 FSEEEEERLMAAHRLYGNKWAMIARLFPGRTDNAVKNHWHVIMARKYREQSSAYRRRKMA 204

Query: 133 TTSDEDSATNQPPPFMDRRVEPALFF 159
            TS+  +  +Q   F+  + EP   +
Sbjct: 205 QTSNYHTIEDQETSFLMCKPEPVTHY 230

[Close]
BLAST of CmoCh01G005140 vs. NCBI nr
Match: gi|951000732|ref|XP_014506887.1| (PREDICTED: uncharacterized protein LOC106766687 [Vigna radiata var. radiata])

HSP 1 Score: 226.5 bits (576), Expect = 3.5e-56
Identity = 113/155 (72.90%), Postives = 126/155 (81.29%), Query Frame = 1 

Query: 8   NSGT-NAKACARGHWRPAEDAKLRELVALYGPQNWNLIAEKLDGRSGKSCRLRWFNQLDP 67
           NSG+ ++K CARGHWRPAED+KL+ELVALYGPQNWNLIAEKL+GRSGKSCRLRWFNQLDP
Sbjct: 126 NSGSGHSKLCARGHWRPAEDSKLKELVALYGPQNWNLIAEKLEGRSGKSCRLRWFNQLDP 185

Query: 68  RINRRAFTQEEEERLMQAHRVHGNKWAMIARLFPGRTDNGVKNHWHVIMARKCRHHFGAG 127
           RINRRAF++EEEERLMQAHR++GNKWAMIARLFPGRTDN VKNHWHVIMARK R    A 
Sbjct: 186 RINRRAFSEEEEERLMQAHRIYGNKWAMIARLFPGRTDNAVKNHWHVIMARKYREQSSAY 245

Query: 128 RRRR-----------RTTTS----DEDSATNQPPP 147
           RRRR            TT+S    D  +A  +PPP
Sbjct: 246 RRRRLSQSVYRRVEENTTSSNVSRDTATAGTEPPP 280

[Close]
BLAST of CmoCh01G005140 vs. NCBI nr
Match: gi|802566872|ref|XP_012067661.1| (PREDICTED: transcription factor MYB44 [Jatropha curcas])

HSP 1 Score: 226.5 bits (576), Expect = 3.5e-56
Identity = 112/162 (69.14%), Postives = 123/162 (75.93%), Query Frame = 1 

Query: 1   MATKSDMNSGTNAKACARGHWRPAEDAKLRELVALYGPQNWNLIAEKLDGRSGKSCRLRW 60
           M +  + +S   +K CARGHWRPAED KL+ELVALYGPQNWNLIAEKL+GRSGKSCRLRW
Sbjct: 107 MISGKETDSSGQSKLCARGHWRPAEDTKLKELVALYGPQNWNLIAEKLEGRSGKSCRLRW 166

Query: 61  FNQLDPRINRRAFTQEEEERLMQAHRVHGNKWAMIARLFPGRTDNGVKNHWHVIMARKCR 120
           FNQLDPRINRRAFT+EEEERLMQAHR++GNKWAMIARLFPGRTDN VKNHWHVIMARK R
Sbjct: 167 FNQLDPRINRRAFTEEEEERLMQAHRLYGNKWAMIARLFPGRTDNAVKNHWHVIMARKYR 226

Query: 121 HHFGAGRR--------RRRTTTSDEDSATNQPPPFMDRRVEP 155
               A RR        RR   TS   + T     F+ R  EP
Sbjct: 227 EQSTAYRRRKLSQSVYRRIEETSTTTTTTTTTTSFISRNPEP 268

[Close]
BLAST of CmoCh01G005140 vs. NCBI nr
Match: gi|449442435|ref|XP_004138987.1| (PREDICTED: transcription factor MYB44 [Cucumis sativus])

HSP 1 Score: 226.5 bits (576), Expect = 3.5e-56
Identity = 105/140 (75.00%), Postives = 116/140 (82.86%), Query Frame = 1 

Query: 9   SGTNAKACARGHWRPAEDAKLRELVALYGPQNWNLIAEKLDGRSGKSCRLRWFNQLDPRI 68
           + + +K C RGHWRPAED KL+ELV LYGPQNWNLIAEKL+GRSGKSCRLRWFNQLDPRI
Sbjct: 2   AASKSKVCGRGHWRPAEDTKLKELVGLYGPQNWNLIAEKLEGRSGKSCRLRWFNQLDPRI 61

Query: 69  NRRAFTQEEEERLMQAHRVHGNKWAMIARLFPGRTDNGVKNHWHVIMARKCRHHFGAGRR 128
           NR+AFT+EEEERLMQAH ++GNKWAMIARLFPGRTDNGVKNHWHV+MAR CR HF + RR
Sbjct: 62  NRKAFTEEEEERLMQAHEMYGNKWAMIARLFPGRTDNGVKNHWHVVMARNCRQHFSSYRR 121

Query: 129 RRRTTT---SDEDSATNQPP 146
             R  T   S   SA   PP
Sbjct: 122 SSRNLTHSLSIASSALPTPP 141

[Close]
BLAST of CmoCh01G005140 vs. NCBI nr
Match: gi|920687655|gb|KOM31638.1| (hypothetical protein LR48_Vigan01g119300 [Vigna angularis])

HSP 1 Score: 226.5 bits (576), Expect = 3.5e-56
Identity = 113/155 (72.90%), Postives = 126/155 (81.29%), Query Frame = 1 

Query: 8   NSGT-NAKACARGHWRPAEDAKLRELVALYGPQNWNLIAEKLDGRSGKSCRLRWFNQLDP 67
           NSG+ ++K CARGHWRPAED+KL+ELVALYGPQNWNLIAEKL+GRSGKSCRLRWFNQLDP
Sbjct: 126 NSGSGHSKLCARGHWRPAEDSKLKELVALYGPQNWNLIAEKLEGRSGKSCRLRWFNQLDP 185

Query: 68  RINRRAFTQEEEERLMQAHRVHGNKWAMIARLFPGRTDNGVKNHWHVIMARKCRHHFGAG 127
           RINRRAF++EEEERLMQAHR++GNKWAMIARLFPGRTDN VKNHWHVIMARK R    A 
Sbjct: 186 RINRRAFSEEEEERLMQAHRIYGNKWAMIARLFPGRTDNAVKNHWHVIMARKYREQSSAY 245

Query: 128 RRRR-----------RTTTS----DEDSATNQPPP 147
           RRRR            TT+S    D  +A  +PPP
Sbjct: 246 RRRRLSQSVYRRVEENTTSSNVSRDTATAGTEPPP 280

The following BLAST results are available for this feature:
BLAST of CmoCh01G005140 vs. Swiss-Prot
Match NameE-valueIdentityDescription
MYB44_ARATH7.9e-3257.84Transcription factor MYB44 OS=Arabidopsis thaliana GN=MYB44 PE=2 SV=1[more]
MYBB_XENLA3.4e-2752.48Myb-related protein B OS=Xenopus laevis GN=mybl2 PE=2 SV=2[more]
MB3R1_ARATH7.6e-2745.87Myb-related protein 3R-1 OS=Arabidopsis thaliana GN=MYB3R-1 PE=2 SV=1[more]
MYB_MOUSE1.0e-2650.50Transcriptional activator Myb OS=Mus musculus GN=Myb PE=1 SV=2[more]
MYB_HUMAN1.0e-2650.50Transcriptional activator Myb OS=Homo sapiens GN=MYB PE=1 SV=2[more]
BLAST of CmoCh01G005140 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0E0C0M6_9ORYZ2.2e-5777.37Uncharacterized protein OS=Oryza meridionalis PE=4 SV=1[more]
A0A0D9UZK3_9ORYZ1.4e-5673.24Uncharacterized protein OS=Leersia perrieri PE=4 SV=1[more]
A0A0D9Y6N7_9ORYZ1.9e-5675.91Uncharacterized protein OS=Oryza glumipatula PE=4 SV=1[more]
A0A067LAW8_JATCU2.4e-5669.14MYB family protein OS=Jatropha curcas GN=JCGZ_15621 PE=4 SV=1[more]
V7CP20_PHAVU2.4e-5672.90Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_002G170500g PE=4 SV=1[more]
BLAST of CmoCh01G005140 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G26780.22.2e-5679.67 myb domain protein 117[more]
AT1G69560.11.4e-5574.47 myb domain protein 105[more]
AT5G17800.15.6e-5266.21 myb domain protein 56[more]
AT1G17950.17.5e-4978.10 myb domain protein 52[more]
AT1G73410.19.8e-4969.53 myb domain protein 54[more]
BLAST of CmoCh01G005140 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|1021027370|gb|KZM85157.1|1.6e-5673.29hypothetical protein DCAR_027421 [Daucus carota subsp. sativus][more]
gi|951000732|ref|XP_014506887.1|3.5e-5672.90PREDICTED: uncharacterized protein LOC106766687 [Vigna radiata var. radiata][more]
gi|802566872|ref|XP_012067661.1|3.5e-5669.14PREDICTED: transcription factor MYB44 [Jatropha curcas][more]
gi|449442435|ref|XP_004138987.1|3.5e-5675.00PREDICTED: transcription factor MYB44 [Cucumis sativus][more]
gi|920687655|gb|KOM31638.1|3.5e-5672.90hypothetical protein LR48_Vigan01g119300 [Vigna angularis][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001005SANT/Myb
IPR009057Homeobox-like_sf
IPR017930Myb_dom
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0006810 transport
cellular_component GO:0005575 cellular_component
cellular_component GO:0016020 membrane
molecular_function GO:0003677 DNA binding
molecular_function GO:0005215 transporter activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh01G005140.1CmoCh01G005140.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001005SANT/Myb domainPFAMPF00249Myb_DNA-bindingcoord: 70..112
score: 2.6E-14coord: 18..63
score: 2.9
IPR001005SANT/Myb domainSMARTSM00717santcoord: 69..117
score: 1.5E-12coord: 17..66
score: 6.1
IPR009057Homeodomain-likeGENE3DG3DSA:1.10.10.60coord: 19..71
score: 8.2E-27coord: 72..118
score: 2.3
IPR009057Homeodomain-likeunknownSSF46689Homeodomain-likecoord: 18..111
score: 6.74
IPR017930Myb domainPROFILEPS51294HTH_MYBcoord: 13..64
score: 18.445coord: 65..119
score: 26
NoneNo IPR availablePANTHERPTHR10641MYB-LIKE DNA-BINDING PROTEIN MYBcoord: 16..137
score: 2.2
NoneNo IPR availablePANTHERPTHR10641:SF473MYB TRANSCRIPTION FACTORcoord: 16..137
score: 2.2

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh01G005140Cucsa.189540Cucumber (Gy14) v1cgycmoB0553
CmoCh01G005140Cucsa.284980Cucumber (Gy14) v1cgycmoB0792
CmoCh01G005140CmaCh18G011430Cucurbita maxima (Rimu)cmacmoB413
CmoCh01G005140CmaCh01G004780Cucurbita maxima (Rimu)cmacmoB468
CmoCh01G005140CmaCh05G008630Cucurbita maxima (Rimu)cmacmoB781
CmoCh01G005140Cla010193Watermelon (97103) v1cmowmB442
CmoCh01G005140Csa2G100550Cucumber (Chinese Long) v2cmocuB429
CmoCh01G005140Csa5G605730Cucumber (Chinese Long) v2cmocuB471
CmoCh01G005140MELO3C012105Melon (DHL92) v3.5.1cmomeB377
CmoCh01G005140ClCG05G024180Watermelon (Charleston Gray)cmowcgB420
CmoCh01G005140CSPI05G23840Wild cucumber (PI 183967)cmocpiB475
CmoCh01G005140CSPI02G08240Wild cucumber (PI 183967)cmocpiB433
CmoCh01G005140Lsi04G004090Bottle gourd (USVL1VR-Ls)cmolsiB429
CmoCh01G005140Lsi11G009700Bottle gourd (USVL1VR-Ls)cmolsiB389
CmoCh01G005140Cp4.1LG11g07170Cucurbita pepo (Zucchini)cmocpeB422
CmoCh01G005140MELO3C012105.2Melon (DHL92) v3.6.1cmomedB434
CmoCh01G005140MELO3C008549.2Melon (DHL92) v3.6.1cmomedB481
CmoCh01G005140CsaV3_5G032830Cucumber (Chinese Long) v3cmocucB0564
CmoCh01G005140CsaV3_2G010610Cucumber (Chinese Long) v3cmocucB0518
CmoCh01G005140Cla97C11G216040Watermelon (97103) v2cmowmbB432
CmoCh01G005140Cla97C05G106220Watermelon (97103) v2cmowmbB469
CmoCh01G005140Bhi07G001268Wax gourdcmowgoB0597
CmoCh01G005140CsGy5G023390Cucumber (Gy14) v2cgybcmoB610
CmoCh01G005140CsGy2G008510Cucumber (Gy14) v2cgybcmoB199
CmoCh01G005140Carg25811Silver-seed gourdcarcmoB1433
CmoCh01G005140Carg20425Silver-seed gourdcarcmoB0954
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CmoCh01G005140CmoCh18G011620Cucurbita moschata (Rifu)cmocmoB331
CmoCh01G005140CmoCh04G017460Cucurbita moschata (Rifu)cmocmoB365
The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh01G005140Watermelon (97103) v2cmowmbB439
CmoCh01G005140Wax gourdcmowgoB0552
CmoCh01G005140Cucurbita moschata (Rifu)cmocmoB372
CmoCh01G005140Cucurbita maxima (Rimu)cmacmoB258
CmoCh01G005140Melon (DHL92) v3.5.1cmomeB420
CmoCh01G005140Watermelon (Charleston Gray)cmowcgB393
CmoCh01G005140Watermelon (97103) v1cmowmB458
CmoCh01G005140Cucurbita pepo (Zucchini)cmocpeB449