CmaCh01G004780 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh01G004780
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Myb domain protein 105
Location	Cma_Chr01 : 2419676 .. 2420269 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTACCAAAAGCGACATGAATTCAGGCACCAACGCGAAGGCTTGTGCAAGAGGACACTGGAGGCCAGCAGAGGACGCCAAGCTAAAGGAGCTGGTCGCCCTATACGGCCCCCAAAACTGGAACCTCATCGCGGAGAAACTGGACGGCAGATCTGGTAGTGTGGTAGTTTAAAATCACAAGTTTTTTTTTTTTTTTTAAGGTAATTCACTGACATGGGGGGTTGTTGTTTTGGACAAGGTAGGTAAGAGCTGCAGACTGCGATGGTTCAACCAGCTGGACCCGAGGATCAACCGACGAGCCTTCACACACGAGGAAGAGGCGAGGCTAATGCAGGCGCATAGAGTTCACGGCAACAAATGGGCCATGATTGCCAGGCTATTTCCTGGGCGCACTGATAATGGTGTCAAGAATCATTGGCATGTCATCATGGCTAGAAAATGTAGACACCATTTTGCTGCTGGAAGGCGGCGCAGGAGAACGGCAACCTCGGATGAAGATTCACCTACAAATGAACCGCCGTCGTTTATGGACCGTAGTGTTGAACCGGCGTTGTTCTTCGACTTTCTTGGAGTAGGAGGTGGACCCACATGA

mRNA sequence

ATGGCTACCAAAAGCGACATGAATTCAGGCACCAACGCGAAGGCTTGTGCAAGAGGACACTGGAGGCCAGCAGAGGACGCCAAGCTAAAGGAGCTGGTCGCCCTATACGGCCCCCAAAACTGGAACCTCATCGCGGAGAAACTGGACGGCAGATCTGGTAAGAGCTGCAGACTGCGATGGTTCAACCAGCTGGACCCGAGGATCAACCGACGAGCCTTCACACACGAGGAAGAGGCGAGGCTAATGCAGGCGCATAGAGTTCACGGCAACAAATGGGCCATGATTGCCAGGCTATTTCCTGGGCGCACTGATAATGGTGTCAAGAATCATTGGCATGTCATCATGGCTAGAAAATGTAGACACCATTTTGCTGCTGGAAGGCGGCGCAGGAGAACGGCAACCTCGGATGAAGATTCACCTACAAATGAACCGCCGTCGTTTATGGACCGTAGTGTTGAACCGGCGTTGTTCTTCGACTTTCTTGGAGTAGGAGGTGGACCCACATGA

Coding sequence (CDS)

ATGGCTACCAAAAGCGACATGAATTCAGGCACCAACGCGAAGGCTTGTGCAAGAGGACACTGGAGGCCAGCAGAGGACGCCAAGCTAAAGGAGCTGGTCGCCCTATACGGCCCCCAAAACTGGAACCTCATCGCGGAGAAACTGGACGGCAGATCTGGTAAGAGCTGCAGACTGCGATGGTTCAACCAGCTGGACCCGAGGATCAACCGACGAGCCTTCACACACGAGGAAGAGGCGAGGCTAATGCAGGCGCATAGAGTTCACGGCAACAAATGGGCCATGATTGCCAGGCTATTTCCTGGGCGCACTGATAATGGTGTCAAGAATCATTGGCATGTCATCATGGCTAGAAAATGTAGACACCATTTTGCTGCTGGAAGGCGGCGCAGGAGAACGGCAACCTCGGATGAAGATTCACCTACAAATGAACCGCCGTCGTTTATGGACCGTAGTGTTGAACCGGCGTTGTTCTTCGACTTTCTTGGAGTAGGAGGTGGACCCACATGA

Protein sequence

MATKSDMNSGTNAKACARGHWRPAEDAKLKELVALYGPQNWNLIAEKLDGRSGKSCRLRWFNQLDPRINRRAFTHEEEARLMQAHRVHGNKWAMIARLFPGRTDNGVKNHWHVIMARKCRHHFAAGRRRRRTATSDEDSPTNEPPSFMDRSVEPALFFDFLGVGGGPT

Homology

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BLAST of CmaCh01G004780 vs. Swiss-Prot
Match: MYB44_ARATH (Transcription factor MYB44 OS=Arabidopsis thaliana GN=MYB44 PE=2 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 8.7e-31
Identity = 57/102 (55.88%), Postives = 73/102 (71.57%), Query Frame = 1


Query: 18  RGHWRPAEDAKLKELVALYGPQNWNLIAEKLDGRSGKSCRLRWFNQLDPRINRRAFTHEE 77
           +G W P ED +L+ LV  YGP+NW +I++ + GRSGKSCRLRW NQL P++  R F+ EE
Sbjct: 6   KGPWSPEEDEQLRRLVVKYGPRNWTVISKSIPGRSGKSCRLRWCNQLSPQVEHRPFSAEE 65

Query: 78  EARLMQAHRVHGNKWAMIARLFPGRTDNGVKNHWHVIMARKC 120
           +  + +AH   GNKWA IARL  GRTDN VKNHW+  + RKC
Sbjct: 66  DETIARAHAQFGNKWATIARLLNGRTDNAVKNHWNSTLKRKC 107

[Close]

BLAST of CmaCh01G004780 vs. Swiss-Prot
Match: MB3R1_ARATH (Myb-related protein 3R-1 OS=Arabidopsis thaliana GN=MYB3R-1 PE=2 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 4.5e-27
Identity = 50/109 (45.87%), Postives = 75/109 (68.81%), Query Frame = 1


Query: 18  RGHWRPAEDAKLKELVALYGPQNWNLIAEKLDGRSGKSCRLRWFNQLDPRINRRAFTHEE 77
           +G W   ED  + +LV  YGP+ W+ I++ L GR GK CR RW N L+P IN+ A+T EE
Sbjct: 87  KGPWSKEEDNTIIDLVEKYGPKKWSTISQHLPGRIGKQCRERWHNHLNPGINKNAWTQEE 146

Query: 78  EARLMQAHRVHGNKWAMIARLFPGRTDNGVKNHWHVIMARKCRHHFAAG 127
           E  L++AH+++GNKWA + +  PGR+DN +KNHW+  + +K   ++A+G
Sbjct: 147 ELTLIRAHQIYGNKWAELMKFLPGRSDNSIKNHWNSSVKKKLDSYYASG 195

[Close]

BLAST of CmaCh01G004780 vs. Swiss-Prot
Match: MYBB_XENLA (Myb-related protein B OS=Xenopus laevis GN=mybl2 PE=2 SV=2)

HSP 1 Score: 121.7 bits (304), Expect = 7.6e-27
Identity = 53/101 (52.48%), Postives = 71/101 (70.30%), Query Frame = 1


Query: 18  RGHWRPAEDAKLKELVALYGPQNWNLIAEKLDGRSGKSCRLRWFNQLDPRINRRAFTHEE 77
           +G W   ED K+ ELV  YG ++W LIA++L GR GK CR RW N L+P + + ++T EE
Sbjct: 83  KGPWTKEEDEKVIELVKKYGTKHWTLIAKQLRGRMGKQCRERWHNHLNPEVKKSSWTEEE 142

Query: 78  EARLMQAHRVHGNKWAMIARLFPGRTDNGVKNHWHVIMARK 119
           +  + QAH+V GN+WA IA+L PGRTDN VKNHW+  + RK
Sbjct: 143 DRIICQAHKVLGNRWAEIAKLLPGRTDNAVKNHWNSTIKRK 183

[Close]

BLAST of CmaCh01G004780 vs. Swiss-Prot
Match: MYB_MOUSE (Transcriptional activator Myb OS=Mus musculus GN=Myb PE=1 SV=2)

HSP 1 Score: 120.2 bits (300), Expect = 2.2e-26
Identity = 51/101 (50.50%), Postives = 70/101 (69.31%), Query Frame = 1


Query: 18  RGHWRPAEDAKLKELVALYGPQNWNLIAEKLDGRSGKSCRLRWFNQLDPRINRRAFTHEE 77
           +G W   ED ++ ELV  YGP+ W++IA+ L GR GK CR RW N L+P + + ++T EE
Sbjct: 92  KGPWTKEEDQRVIELVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEE 151

Query: 78  EARLMQAHRVHGNKWAMIARLFPGRTDNGVKNHWHVIMARK 119
           +  + QAH+  GN+WA IA+L PGRTDN +KNHW+  M RK
Sbjct: 152 DRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRK 192

[Close]

BLAST of CmaCh01G004780 vs. Swiss-Prot
Match: MYB_HUMAN (Transcriptional activator Myb OS=Homo sapiens GN=MYB PE=1 SV=2)

HSP 1 Score: 120.2 bits (300), Expect = 2.2e-26
Identity = 51/101 (50.50%), Postives = 70/101 (69.31%), Query Frame = 1


Query: 18  RGHWRPAEDAKLKELVALYGPQNWNLIAEKLDGRSGKSCRLRWFNQLDPRINRRAFTHEE 77
           +G W   ED ++ ELV  YGP+ W++IA+ L GR GK CR RW N L+P + + ++T EE
Sbjct: 92  KGPWTKEEDQRVIELVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEE 151

Query: 78  EARLMQAHRVHGNKWAMIARLFPGRTDNGVKNHWHVIMARK 119
           +  + QAH+  GN+WA IA+L PGRTDN +KNHW+  M RK
Sbjct: 152 DRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRK 192

[Close]

BLAST of CmaCh01G004780 vs. TrEMBL
Match: A0A059BGH3_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_G02492 PE=4 SV=1)

HSP 1 Score: 226.9 bits (577), Expect = 1.9e-56
Identity = 111/149 (74.50%), Postives = 118/149 (79.19%), Query Frame = 1


Query: 6   DMNSGTNAKACARGHWRPAEDAKLKELVALYGPQNWNLIAEKLDGRSGKSCRLRWFNQLD 65
           D  +G  +K CARGHWRPAED KLKELVALYGPQNWNLIAEKL+GRSGKSCRLRWFNQLD
Sbjct: 55  DGEAGGQSKLCARGHWRPAEDTKLKELVALYGPQNWNLIAEKLEGRSGKSCRLRWFNQLD 114

Query: 66  PRINRRAFTHEEEARLMQAHRVHGNKWAMIARLFPGRTDNGVKNHWHVIMARKCRHHFAA 125
           PRINRRAFT EEE RLMQAHRV+GNKWAMIARLFPGRTDN VKNHWHVIMARK R    A
Sbjct: 115 PRINRRAFTEEEEERLMQAHRVYGNKWAMIARLFPGRTDNAVKNHWHVIMARKYREQSTA 174

Query: 126 GRRRR----RTATSDEDSPTNEPPSFMDR 151
            RRR+    R+ +S    P   P    DR
Sbjct: 175 YRRRKLSLSRSPSSGYARPDETPAGHRDR 203

[Close]

BLAST of CmaCh01G004780 vs. TrEMBL
Match: A0A067LAW8_JATCU (MYB family protein OS=Jatropha curcas GN=JCGZ_15621 PE=4 SV=1)

HSP 1 Score: 226.9 bits (577), Expect = 1.9e-56
Identity = 113/162 (69.75%), Postives = 123/162 (75.93%), Query Frame = 1


Query: 1   MATKSDMNSGTNAKACARGHWRPAEDAKLKELVALYGPQNWNLIAEKLDGRSGKSCRLRW 60
           M +  + +S   +K CARGHWRPAED KLKELVALYGPQNWNLIAEKL+GRSGKSCRLRW
Sbjct: 107 MISGKETDSSGQSKLCARGHWRPAEDTKLKELVALYGPQNWNLIAEKLEGRSGKSCRLRW 166

Query: 61  FNQLDPRINRRAFTHEEEARLMQAHRVHGNKWAMIARLFPGRTDNGVKNHWHVIMARKCR 120
           FNQLDPRINRRAFT EEE RLMQAHR++GNKWAMIARLFPGRTDN VKNHWHVIMARK R
Sbjct: 167 FNQLDPRINRRAFTEEEEERLMQAHRLYGNKWAMIARLFPGRTDNAVKNHWHVIMARKYR 226

Query: 121 HHFAAGRR--------RRRTATSDEDSPTNEPPSFMDRSVEP 155
               A RR        RR   TS   + T    SF+ R+ EP
Sbjct: 227 EQSTAYRRRKLSQSVYRRIEETSTTTTTTTTTTSFISRNPEP 268

[Close]

BLAST of CmaCh01G004780 vs. TrEMBL
Match: D9ZJ60_MALDO (MYB domain class transcription factor OS=Malus domestica GN=MYB32 PE=2 SV=1)

HSP 1 Score: 226.9 bits (577), Expect = 1.9e-56
Identity = 112/164 (68.29%), Postives = 126/164 (76.83%), Query Frame = 1


Query: 3   TKSDMNSGTNAKACARGHWRPAEDAKLKELVALYGPQNWNLIAEKLDGRSGKSCRLRWFN 62
           ++ +  SG  +K CARGHWRPAED+KLKELVALYGPQNWNLIAEKL+GRSGKSCRLRWFN
Sbjct: 23  SEKETESG-QSKLCARGHWRPAEDSKLKELVALYGPQNWNLIAEKLEGRSGKSCRLRWFN 82

Query: 63  QLDPRINRRAFTHEEEARLMQAHRVHGNKWAMIARLFPGRTDNGVKNHWHVIMARKCRHH 122
           QLDPRINRRAFT EEE RLMQAHR++GNKWAMIARLFPGRTDN VKNHWHVIMARK R  
Sbjct: 83  QLDPRINRRAFTEEEEERLMQAHRIYGNKWAMIARLFPGRTDNAVKNHWHVIMARKYREQ 142

Query: 123 FAAGRRRRRTATSDEDSPTNEPPSFMDRSVEPALFFDFLGVGGG 167
            +A RRR+   T       N   +   RS EP   ++ L +  G
Sbjct: 143 SSAYRRRKLNQTVYRSMEENPSFNAASRSTEPPPPYNGLSLPNG 185

[Close]

BLAST of CmaCh01G004780 vs. TrEMBL
Match: M5XP83_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa025260mg PE=4 SV=1)

HSP 1 Score: 225.3 bits (573), Expect = 5.4e-56
Identity = 112/143 (78.32%), Postives = 120/143 (83.92%), Query Frame = 1


Query: 13  AKACARGHWRPAEDAKLKELVALYGPQNWNLIAEKLDGRSGKSCRLRWFNQLDPRINRRA 72
           +K CARGHWRPAED+KLKELVALYGPQNWNLIAEKL+GRSGKSCRLRWFNQLDPRINRRA
Sbjct: 151 SKHCARGHWRPAEDSKLKELVALYGPQNWNLIAEKLEGRSGKSCRLRWFNQLDPRINRRA 210

Query: 73  FTHEEEARLMQAHRVHGNKWAMIARLFPGRTDNGVKNHWHVIMARKCRHHFAAGRRRRRT 132
           FT EEE RLMQAHRV+GNKWAMIARLFPGRTDN VKNHWHVIMARK R   +A RRR+ +
Sbjct: 211 FTEEEEDRLMQAHRVYGNKWAMIARLFPGRTDNAVKNHWHVIMARKYREQSSAYRRRKLS 270

Query: 133 ATSDEDSPTNEPPSF-MDRSVEP 155
            T        E PSF + RS EP
Sbjct: 271 QTVYR--RMEEDPSFNVSRSTEP 291

[Close]

BLAST of CmaCh01G004780 vs. TrEMBL
Match: A0A0A0LHV6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G100550 PE=4 SV=1)

HSP 1 Score: 224.2 bits (570), Expect = 1.2e-55
Identity = 100/126 (79.37%), Postives = 110/126 (87.30%), Query Frame = 1


Query: 9   SGTNAKACARGHWRPAEDAKLKELVALYGPQNWNLIAEKLDGRSGKSCRLRWFNQLDPRI 68
           + + +K C RGHWRPAED KLKELV LYGPQNWNLIAEKL+GRSGKSCRLRWFNQLDPRI
Sbjct: 2   AASKSKVCGRGHWRPAEDTKLKELVGLYGPQNWNLIAEKLEGRSGKSCRLRWFNQLDPRI 61

Query: 69  NRRAFTHEEEARLMQAHRVHGNKWAMIARLFPGRTDNGVKNHWHVIMARKCRHHFAAGRR 128
           NR+AFT EEE RLMQAH ++GNKWAMIARLFPGRTDNGVKNHWHV+MAR CR HF++ RR
Sbjct: 62  NRKAFTEEEEERLMQAHEMYGNKWAMIARLFPGRTDNGVKNHWHVVMARNCRQHFSSYRR 121

Query: 129 RRRTAT 135
             R  T
Sbjct: 122 SSRNLT 127

[Close]

BLAST of CmaCh01G004780 vs. TAIR10
Match: AT1G26780.2 (AT1G26780.2 myb domain protein 117)

HSP 1 Score: 214.5 bits (545), Expect = 4.9e-56
Identity = 98/123 (79.67%), Postives = 107/123 (86.99%), Query Frame = 1


Query: 8   NSGTNAKACARGHWRPAEDAKLKELVALYGPQNWNLIAEKLDGRSGKSCRLRWFNQLDPR 67
           +S +      RGHWRPAED KLKELV++YGPQNWNLIAEKL GRSGKSCRLRWFNQLDPR
Sbjct: 88  SSSSKPSVLGRGHWRPAEDVKLKELVSIYGPQNWNLIAEKLQGRSGKSCRLRWFNQLDPR 147

Query: 68  INRRAFTHEEEARLMQAHRVHGNKWAMIARLFPGRTDNGVKNHWHVIMARKCRHHFAAGR 127
           INRRAFT EEE RLMQAHR++GNKWAMIARLFPGRTDN VKNHWHV+MARK R H +A R
Sbjct: 148 INRRAFTEEEEERLMQAHRLYGNKWAMIARLFPGRTDNSVKNHWHVVMARKYREHSSAYR 207

Query: 128 RRR 131
           RR+
Sbjct: 208 RRK 210

[Close]

BLAST of CmaCh01G004780 vs. TAIR10
Match: AT1G69560.1 (AT1G69560.1 myb domain protein 105)

HSP 1 Score: 210.7 bits (535), Expect = 7.0e-55
Identity = 105/141 (74.47%), Postives = 115/141 (81.56%), Query Frame = 1


Query: 10  GTNAKAC-ARGHWRPAEDAKLKELVALYGPQNWNLIAEKLDGRSGKSCRLRWFNQLDPRI 69
           G ++KA  +RGHWRPAED KLKELVA+YGPQNWNLIAEKL GRSGKSCRLRWFNQLDPRI
Sbjct: 98  GHSSKASVSRGHWRPAEDTKLKELVAVYGPQNWNLIAEKLQGRSGKSCRLRWFNQLDPRI 157

Query: 70  NRRAFTHEEEARLMQAHRVHGNKWAMIARLFPGRTDNGVKNHWHVIMARKCRHHFAAGRR 129
           NRRAFT EEE RLMQAHR++GNKWAMIARLFPGRTDN VKNHWHVIMARK R   ++  R
Sbjct: 158 NRRAFTEEEEERLMQAHRLYGNKWAMIARLFPGRTDNSVKNHWHVIMARKFREQ-SSSYR 217

Query: 130 RRRTATSDEDSPTNEPPSFMD 150
           RR+T  S +      P  F D
Sbjct: 218 RRKTMVSLKPLINPNPHIFND 237

[Close]

BLAST of CmaCh01G004780 vs. TAIR10
Match: AT5G17800.1 (AT5G17800.1 myb domain protein 56)

HSP 1 Score: 198.4 bits (503), Expect = 3.6e-51
Identity = 95/145 (65.52%), Postives = 109/145 (75.17%), Query Frame = 1


Query: 9   SGTNAKACARGHWRPAEDAKLKELVALYGPQNWNLIAEKLDGRSGKSCRLRWFNQLDPRI 68
           SG N K C+RGHWRP EDAKLKELVA +GPQNWNLI+  L GRSGKSCRLRWFNQLDPRI
Sbjct: 84  SGINTKVCSRGHWRPTEDAKLKELVAQFGPQNWNLISNHLLGRSGKSCRLRWFNQLDPRI 143

Query: 69  NRRAFTHEEEARLMQAHRVHGNKWAMIARLFPGRTDNGVKNHWHVIMARKCRHHFAAGRR 128
           N+RAFT EEE RL+ AHR +GNKWA+I+RLFPGRTDN VKNHWHVIMAR+ R      +R
Sbjct: 144 NKRAFTEEEEFRLLAAHRAYGNKWALISRLFPGRTDNAVKNHWHVIMARRTRE----SQR 203

Query: 129 RRRTATSDEDSPTNEPPSFMDRSVE 154
           +R+           +PP  + R  E
Sbjct: 204 QRQ-----------QPPPTLSRDAE 213

[Close]

BLAST of CmaCh01G004780 vs. TAIR10
Match: AT1G73410.1 (AT1G73410.1 myb domain protein 54)

HSP 1 Score: 189.5 bits (480), Expect = 1.7e-48
Identity = 83/105 (79.05%), Postives = 91/105 (86.67%), Query Frame = 1


Query: 16  CARGHWRPAEDAKLKELVALYGPQNWNLIAEKLDGRSGKSCRLRWFNQLDPRINRRAFTH 75
           C+RGHWRPAED KLK+LV  YGP NWN IA KL GRSGKSCRLRWFNQLDPRINR  FT 
Sbjct: 4   CSRGHWRPAEDEKLKDLVEQYGPHNWNAIALKLPGRSGKSCRLRWFNQLDPRINRNPFTE 63

Query: 76  EEEARLMQAHRVHGNKWAMIARLFPGRTDNGVKNHWHVIMARKCR 121
           EEE RL+ AHR+HGN+W++IARLFPGRTDN VKNHWHVIMAR+ R
Sbjct: 64  EEEERLLAAHRIHGNRWSIIARLFPGRTDNAVKNHWHVIMARRTR 108

[Close]

BLAST of CmaCh01G004780 vs. TAIR10
Match: AT1G17950.1 (AT1G17950.1 myb domain protein 52)

HSP 1 Score: 186.8 bits (473), Expect = 1.1e-47
Identity = 80/105 (76.19%), Postives = 91/105 (86.67%), Query Frame = 1


Query: 16  CARGHWRPAEDAKLKELVALYGPQNWNLIAEKLDGRSGKSCRLRWFNQLDPRINRRAFTH 75
           C+RGHWRPAED KL+ELV  +GP NWN IA+KL GRSGKSCRLRWFNQLDPRINR  FT 
Sbjct: 3   CSRGHWRPAEDEKLRELVEQFGPHNWNAIAQKLSGRSGKSCRLRWFNQLDPRINRNPFTE 62

Query: 76  EEEARLMQAHRVHGNKWAMIARLFPGRTDNGVKNHWHVIMARKCR 121
           EEE RL+ +HR+HGN+W++IAR FPGRTDN VKNHWHVIMAR+ R
Sbjct: 63  EEEERLLASHRIHGNRWSVIARFFPGRTDNAVKNHWHVIMARRGR 107

[Close]

BLAST of CmaCh01G004780 vs. NCBI nr
Match: gi|802566872|ref|XP_012067661.1| (PREDICTED: transcription factor MYB44 [Jatropha curcas])

HSP 1 Score: 226.9 bits (577), Expect = 2.7e-56
Identity = 113/162 (69.75%), Postives = 123/162 (75.93%), Query Frame = 1


Query: 1   MATKSDMNSGTNAKACARGHWRPAEDAKLKELVALYGPQNWNLIAEKLDGRSGKSCRLRW 60
           M +  + +S   +K CARGHWRPAED KLKELVALYGPQNWNLIAEKL+GRSGKSCRLRW
Sbjct: 107 MISGKETDSSGQSKLCARGHWRPAEDTKLKELVALYGPQNWNLIAEKLEGRSGKSCRLRW 166

Query: 61  FNQLDPRINRRAFTHEEEARLMQAHRVHGNKWAMIARLFPGRTDNGVKNHWHVIMARKCR 120
           FNQLDPRINRRAFT EEE RLMQAHR++GNKWAMIARLFPGRTDN VKNHWHVIMARK R
Sbjct: 167 FNQLDPRINRRAFTEEEEERLMQAHRLYGNKWAMIARLFPGRTDNAVKNHWHVIMARKYR 226

Query: 121 HHFAAGRR--------RRRTATSDEDSPTNEPPSFMDRSVEP 155
               A RR        RR   TS   + T    SF+ R+ EP
Sbjct: 227 EQSTAYRRRKLSQSVYRRIEETSTTTTTTTTTTSFISRNPEP 268

[Close]

BLAST of CmaCh01G004780 vs. NCBI nr
Match: gi|302398937|gb|ADL36763.1| (MYB domain class transcription factor [Malus domestica])

HSP 1 Score: 226.9 bits (577), Expect = 2.7e-56
Identity = 112/164 (68.29%), Postives = 126/164 (76.83%), Query Frame = 1


Query: 3   TKSDMNSGTNAKACARGHWRPAEDAKLKELVALYGPQNWNLIAEKLDGRSGKSCRLRWFN 62
           ++ +  SG  +K CARGHWRPAED+KLKELVALYGPQNWNLIAEKL+GRSGKSCRLRWFN
Sbjct: 23  SEKETESG-QSKLCARGHWRPAEDSKLKELVALYGPQNWNLIAEKLEGRSGKSCRLRWFN 82

Query: 63  QLDPRINRRAFTHEEEARLMQAHRVHGNKWAMIARLFPGRTDNGVKNHWHVIMARKCRHH 122
           QLDPRINRRAFT EEE RLMQAHR++GNKWAMIARLFPGRTDN VKNHWHVIMARK R  
Sbjct: 83  QLDPRINRRAFTEEEEERLMQAHRIYGNKWAMIARLFPGRTDNAVKNHWHVIMARKYREQ 142

Query: 123 FAAGRRRRRTATSDEDSPTNEPPSFMDRSVEPALFFDFLGVGGG 167
            +A RRR+   T       N   +   RS EP   ++ L +  G
Sbjct: 143 SSAYRRRKLNQTVYRSMEENPSFNAASRSTEPPPPYNGLSLPNG 185

[Close]

BLAST of CmaCh01G004780 vs. NCBI nr
Match: gi|702430770|ref|XP_010068785.1| (PREDICTED: transcription factor MYB122-like [Eucalyptus grandis])

HSP 1 Score: 226.9 bits (577), Expect = 2.7e-56
Identity = 111/149 (74.50%), Postives = 118/149 (79.19%), Query Frame = 1


Query: 6   DMNSGTNAKACARGHWRPAEDAKLKELVALYGPQNWNLIAEKLDGRSGKSCRLRWFNQLD 65
           D  +G  +K CARGHWRPAED KLKELVALYGPQNWNLIAEKL+GRSGKSCRLRWFNQLD
Sbjct: 95  DGEAGGQSKLCARGHWRPAEDTKLKELVALYGPQNWNLIAEKLEGRSGKSCRLRWFNQLD 154

Query: 66  PRINRRAFTHEEEARLMQAHRVHGNKWAMIARLFPGRTDNGVKNHWHVIMARKCRHHFAA 125
           PRINRRAFT EEE RLMQAHRV+GNKWAMIARLFPGRTDN VKNHWHVIMARK R    A
Sbjct: 155 PRINRRAFTEEEEERLMQAHRVYGNKWAMIARLFPGRTDNAVKNHWHVIMARKYREQSTA 214

Query: 126 GRRRR----RTATSDEDSPTNEPPSFMDR 151
            RRR+    R+ +S    P   P    DR
Sbjct: 215 YRRRKLSLSRSPSSGYARPDETPAGHRDR 243

[Close]

BLAST of CmaCh01G004780 vs. NCBI nr
Match: gi|657994306|ref|XP_008389457.1| (PREDICTED: myb-related protein Hv33-like [Malus domestica])

HSP 1 Score: 226.9 bits (577), Expect = 2.7e-56
Identity = 112/164 (68.29%), Postives = 126/164 (76.83%), Query Frame = 1


Query: 3   TKSDMNSGTNAKACARGHWRPAEDAKLKELVALYGPQNWNLIAEKLDGRSGKSCRLRWFN 62
           ++ +  SG  +K CARGHWRPAED+KLKELVALYGPQNWNLIAEKL+GRSGKSCRLRWFN
Sbjct: 115 SEKETESG-QSKLCARGHWRPAEDSKLKELVALYGPQNWNLIAEKLEGRSGKSCRLRWFN 174

Query: 63  QLDPRINRRAFTHEEEARLMQAHRVHGNKWAMIARLFPGRTDNGVKNHWHVIMARKCRHH 122
           QLDPRINRRAFT EEE RLMQAHR++GNKWAMIARLFPGRTDN VKNHWHVIMARK R  
Sbjct: 175 QLDPRINRRAFTEEEEERLMQAHRIYGNKWAMIARLFPGRTDNAVKNHWHVIMARKYREQ 234

Query: 123 FAAGRRRRRTATSDEDSPTNEPPSFMDRSVEPALFFDFLGVGGG 167
            +A RRR+   T       N   +   RS EP   ++ L +  G
Sbjct: 235 SSAYRRRKLNQTVYRSMEENPSFNAASRSTEPPPPYNGLSLPNG 277

[Close]

BLAST of CmaCh01G004780 vs. NCBI nr
Match: gi|645229743|ref|XP_008221603.1| (PREDICTED: uncharacterized protein LOC103321566 [Prunus mume])

HSP 1 Score: 226.9 bits (577), Expect = 2.7e-56
Identity = 112/151 (74.17%), Postives = 124/151 (82.12%), Query Frame = 1


Query: 13  AKACARGHWRPAEDAKLKELVALYGPQNWNLIAEKLDGRSGKSCRLRWFNQLDPRINRRA 72
           +K CARGHWRPAED+KLKELVALYGPQNWNLIAEKL+GRSGKSCRLRWFNQLDPRINRRA
Sbjct: 111 SKHCARGHWRPAEDSKLKELVALYGPQNWNLIAEKLEGRSGKSCRLRWFNQLDPRINRRA 170

Query: 73  FTHEEEARLMQAHRVHGNKWAMIARLFPGRTDNGVKNHWHVIMARKCRHHFAAGRRRRRT 132
           FT EEE RLMQAHRV+GNKWAMIARLFPGRTDN VKNHWHVIMARK R   +A RRR+ +
Sbjct: 171 FTEEEEDRLMQAHRVYGNKWAMIARLFPGRTDNAVKNHWHVIMARKYREQSSAYRRRKLS 230

Query: 133 AT----SDED-----SPTNEPPSFMDRSVEP 155
            T     +ED     S + EPPS+   ++ P
Sbjct: 231 QTVYRRMEEDPSFNVSRSTEPPSYCTLNLPP 261

The following BLAST results are available for this feature:

BLAST of CmaCh01G004780 vs. Swiss-Prot


Match Name	E-value	Identity	Description
MYB44_ARATH	8.7e-31	55.88	Transcription factor MYB44 OS=Arabidopsis thaliana GN=MYB44 PE=2 SV=1	[more]
MB3R1_ARATH	4.5e-27	45.87	Myb-related protein 3R-1 OS=Arabidopsis thaliana GN=MYB3R-1 PE=2 SV=1	[more]
MYBB_XENLA	7.6e-27	52.48	Myb-related protein B OS=Xenopus laevis GN=mybl2 PE=2 SV=2	[more]
MYB_MOUSE	2.2e-26	50.50	Transcriptional activator Myb OS=Mus musculus GN=Myb PE=1 SV=2	[more]
MYB_HUMAN	2.2e-26	50.50	Transcriptional activator Myb OS=Homo sapiens GN=MYB PE=1 SV=2	[more]

BLAST of CmaCh01G004780 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A059BGH3_EUCGR	1.9e-56	74.50	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_G02492 PE=4 SV=1	[more]
A0A067LAW8_JATCU	1.9e-56	69.75	MYB family protein OS=Jatropha curcas GN=JCGZ_15621 PE=4 SV=1	[more]
D9ZJ60_MALDO	1.9e-56	68.29	MYB domain class transcription factor OS=Malus domestica GN=MYB32 PE=2 SV=1	[more]
M5XP83_PRUPE	5.4e-56	78.32	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa025260mg PE=4 SV=1	[more]
A0A0A0LHV6_CUCSA	1.2e-55	79.37	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G100550 PE=4 SV=1	[more]

BLAST of CmaCh01G004780 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G26780.2	4.9e-56	79.67	myb domain protein 117	[more]
AT1G69560.1	7.0e-55	74.47	myb domain protein 105	[more]
AT5G17800.1	3.6e-51	65.52	myb domain protein 56	[more]
AT1G73410.1	1.7e-48	79.05	myb domain protein 54	[more]
AT1G17950.1	1.1e-47	76.19	myb domain protein 52	[more]

BLAST of CmaCh01G004780 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|802566872\|ref\|XP_012067661.1\|	2.7e-56	69.75	PREDICTED: transcription factor MYB44 [Jatropha curcas]	[more]
gi\|302398937\|gb\|ADL36763.1\|	2.7e-56	68.29	MYB domain class transcription factor [Malus domestica]	[more]
gi\|702430770\|ref\|XP_010068785.1\|	2.7e-56	74.50	PREDICTED: transcription factor MYB122-like [Eucalyptus grandis]	[more]
gi\|657994306\|ref\|XP_008389457.1\|	2.7e-56	68.29	PREDICTED: myb-related protein Hv33-like [Malus domestica]	[more]
gi\|645229743\|ref\|XP_008221603.1\|	2.7e-56	74.17	PREDICTED: uncharacterized protein LOC103321566 [Prunus mume]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001005	SANT/Myb
IPR009057	Homeobox-like_sf
IPR017930	Myb_dom

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003677	DNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh01G004780.1	CmaCh01G004780.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001005	SANT/Myb domain	PFAM	PF00249	Myb_DNA-binding	coord: 70..112 score: 2.9E-13coord: 18..63 score: 2.7
IPR001005	SANT/Myb domain	SMART	SM00717	sant	coord: 17..66 score: 4.5E-14coord: 69..117 score: 3.2
IPR009057	Homeodomain-like	GENE3D	G3DSA:1.10.10.60		coord: 72..118 score: 1.4E-20coord: 19..71 score: 2.6
IPR009057	Homeodomain-like	unknown	SSF46689	Homeodomain-like	coord: 18..111 score: 1.87
IPR017930	Myb domain	PROFILE	PS51294	HTH_MYB	coord: 65..119 score: 25.603coord: 13..64 score: 18
None	No IPR available	PANTHER	PTHR10641	MYB-LIKE DNA-BINDING PROTEIN MYB	coord: 16..131 score: 5.1E-96coord: 148..153 score: 5.1
None	No IPR available	PANTHER	PTHR10641:SF473	MYB TRANSCRIPTION FACTOR	coord: 148..153 score: 5.1E-96coord: 16..131 score: 5.1

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh01G004780	Cucsa.189540	Cucumber (Gy14) v1	cgycmaB0552
CmaCh01G004780	Csa2G100550	Cucumber (Chinese Long) v2	cmacuB441
CmaCh01G004780	CSPI02G08240	Wild cucumber (PI 183967)	cmacpiB444
CmaCh01G004780	CmoCh01G005140	Cucurbita moschata (Rifu)	cmacmoB468
CmaCh01G004780	Lsi11G009700	Bottle gourd (USVL1VR-Ls)	cmalsiB404
CmaCh01G004780	Cp4.1LG11g07170	Cucurbita pepo (Zucchini)	cmacpeB462
CmaCh01G004780	MELO3C008549.2	Melon (DHL92) v3.6.1	cmamedB494
CmaCh01G004780	CsaV3_2G010610	Cucumber (Chinese Long) v3	cmacucB0532
CmaCh01G004780	Cla97C11G216040	Watermelon (97103) v2	cmawmbB451
CmaCh01G004780	CsGy2G008510	Cucumber (Gy14) v2	cgybcmaB205
CmaCh01G004780	Carg20425	Silver-seed gourd	carcmaB0982

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmaCh01G004780	CmaCh05G008630	Cucurbita maxima (Rimu)	cmacmaB428

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh01G004780	Watermelon (97103) v2	cmawmbB456
CmaCh01G004780	Wax gourd	cmawgoB0555
CmaCh01G004780	Cucurbita moschata (Rifu)	cmacmoB485
CmaCh01G004780	Melon (DHL92) v3.5.1	cmameB430
CmaCh01G004780	Watermelon (Charleston Gray)	cmawcgB395
CmaCh01G004780	Watermelon (97103) v1	cmawmB464
CmaCh01G004780	Cucurbita pepo (Zucchini)	cmacpeB491