Lsi11G009700 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi11G009700
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Myb domain protein 105
Location	chr11 : 15437425 .. 15437910 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTTCGAAGTCGAAGGTTTGCGGGAGAGGACACTGGATGCCGGCGGAGGACACGAAGCTTAAAGAACTGGTGGGGGTTTACGGGCCGCAGAACTGGAACCTTATAGCGGAGAAAGTGGAAGGGCGATCTGGAAAGAGTTGCAGATTGAGATGGTTCAACCAGTTGGATCCAAGGATCAACCGAAGAGCCTTCACGGAAGAGGAAGAAGAGAGACTAATGGAAGCACATGGAATGTACGGCAACAAATGGGCTATGATTGCTAGGCTTTTTCCTGGACGGACGGATAATGCTGTGAAGAATCATTGGCATGTGCTTATGGCTAGAAATTGTAGACAACATTTCACTGCTTACAGAAGGAGGAACCTCACTCATTCCTCACTTCCACTTCCACTTCCAAATGCTGAACCTCAACCTTCTTCCTTCCCTGCCTCCGCCTCACGTGCCAATCACATGCCTTTCCATTTTATCCCGCCTCGTGCGTGA

mRNA sequence

ATGGGTTCGAAGTCGAAGGTTTGCGGGAGAGGACACTGGATGCCGGCGGAGGACACGAAGCTTAAAGAACTGGTGGGGGTTTACGGGCCGCAGAACTGGAACCTTATAGCGGAGAAAGTGGAAGGGCGATCTGGAAAGAGTTGCAGATTGAGATGGTTCAACCAGTTGGATCCAAGGATCAACCGAAGAGCCTTCACGGAAGAGGAAGAAGAGAGACTAATGGAAGCACATGGAATGTACGGCAACAAATGGGCTATGATTGCTAGGCTTTTTCCTGGACGGACGGATAATGCTGTGAAGAATCATTGGCATGTGCTTATGGCTAGAAATTGTAGACAACATTTCACTGCTTACAGAAGGAGGAACCTCACTCATTCCTCACTTCCACTTCCACTTCCAAATGCTGAACCTCAACCTTCTTCCTTCCCTGCCTCCGCCTCACGTGCCAATCACATGCCTTTCCATTTTATCCCGCCTCGTGCGTGA

Coding sequence (CDS)

ATGGGTTCGAAGTCGAAGGTTTGCGGGAGAGGACACTGGATGCCGGCGGAGGACACGAAGCTTAAAGAACTGGTGGGGGTTTACGGGCCGCAGAACTGGAACCTTATAGCGGAGAAAGTGGAAGGGCGATCTGGAAAGAGTTGCAGATTGAGATGGTTCAACCAGTTGGATCCAAGGATCAACCGAAGAGCCTTCACGGAAGAGGAAGAAGAGAGACTAATGGAAGCACATGGAATGTACGGCAACAAATGGGCTATGATTGCTAGGCTTTTTCCTGGACGGACGGATAATGCTGTGAAGAATCATTGGCATGTGCTTATGGCTAGAAATTGTAGACAACATTTCACTGCTTACAGAAGGAGGAACCTCACTCATTCCTCACTTCCACTTCCACTTCCAAATGCTGAACCTCAACCTTCTTCCTTCCCTGCCTCCGCCTCACGTGCCAATCACATGCCTTTCCATTTTATCCCGCCTCGTGCGTGA

Protein sequence

MGSKSKVCGRGHWMPAEDTKLKELVGVYGPQNWNLIAEKVEGRSGKSCRLRWFNQLDPRINRRAFTEEEEERLMEAHGMYGNKWAMIARLFPGRTDNAVKNHWHVLMARNCRQHFTAYRRRNLTHSSLPLPLPNAEPQPSSFPASASRANHMPFHFIPPRA

Homology

[Close]

BLAST of Lsi11G009700 vs. Swiss-Prot
Match: MYB44_ARATH (Transcription factor MYB44 OS=Arabidopsis thaliana GN=MYB44 PE=2 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 3.4e-32
Identity = 58/102 (56.86%), Postives = 74/102 (72.55%), Query Frame = 1


Query: 10  RGHWMPAEDTKLKELVGVYGPQNWNLIAEKVEGRSGKSCRLRWFNQLDPRINRRAFTEEE 69
           +G W P ED +L+ LV  YGP+NW +I++ + GRSGKSCRLRW NQL P++  R F+ EE
Sbjct: 6   KGPWSPEEDEQLRRLVVKYGPRNWTVISKSIPGRSGKSCRLRWCNQLSPQVEHRPFSAEE 65

Query: 70  EERLMEAHGMYGNKWAMIARLFPGRTDNAVKNHWHVLMARNC 112
           +E +  AH  +GNKWA IARL  GRTDNAVKNHW+  + R C
Sbjct: 66  DETIARAHAQFGNKWATIARLLNGRTDNAVKNHWNSTLKRKC 107

[Close]

BLAST of Lsi11G009700 vs. Swiss-Prot
Match: MYBA_HUMAN (Myb-related protein A OS=Homo sapiens GN=MYBL1 PE=1 SV=2)

HSP 1 Score: 124.0 bits (310), Expect = 1.5e-27
Identity = 52/104 (50.00%), Postives = 72/104 (69.23%), Query Frame = 1


Query: 10  RGHWMPAEDTKLKELVGVYGPQNWNLIAEKVEGRSGKSCRLRWFNQLDPRINRRAFTEEE 69
           +G W   ED ++ ELV  YGP+ W+LIA+ ++GR GK CR RW N L+P + + ++TEEE
Sbjct: 87  KGPWTKEEDQRVIELVQKYGPKRWSLIAKHLKGRIGKQCRERWHNHLNPEVKKSSWTEEE 146

Query: 70  EERLMEAHGMYGNKWAMIARLFPGRTDNAVKNHWHVLMARNCRQ 114
           +  + EAH   GN+WA IA+L PGRTDN++KNHW+  M R   Q
Sbjct: 147 DRIIYEAHKRLGNRWAEIAKLLPGRTDNSIKNHWNSTMRRKVEQ 190

[Close]

BLAST of Lsi11G009700 vs. Swiss-Prot
Match: MYBA_MOUSE (Myb-related protein A OS=Mus musculus GN=Mybl1 PE=1 SV=2)

HSP 1 Score: 124.0 bits (310), Expect = 1.5e-27
Identity = 52/104 (50.00%), Postives = 72/104 (69.23%), Query Frame = 1


Query: 10  RGHWMPAEDTKLKELVGVYGPQNWNLIAEKVEGRSGKSCRLRWFNQLDPRINRRAFTEEE 69
           +G W   ED ++ ELV  YGP+ W+LIA+ ++GR GK CR RW N L+P + + ++TEEE
Sbjct: 87  KGPWTKEEDQRVIELVQKYGPKRWSLIAKHLKGRIGKQCRERWHNHLNPEVKKSSWTEEE 146

Query: 70  EERLMEAHGMYGNKWAMIARLFPGRTDNAVKNHWHVLMARNCRQ 114
           +  + EAH   GN+WA IA+L PGRTDN++KNHW+  M R   Q
Sbjct: 147 DRIIYEAHKRLGNRWAEIAKLLPGRTDNSIKNHWNSTMRRKVEQ 190

[Close]

BLAST of Lsi11G009700 vs. Swiss-Prot
Match: MYB_XENLA (Transcriptional activator Myb OS=Xenopus laevis GN=myb PE=2 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 1.9e-27
Identity = 52/104 (50.00%), Postives = 72/104 (69.23%), Query Frame = 1


Query: 10  RGHWMPAEDTKLKELVGVYGPQNWNLIAEKVEGRSGKSCRLRWFNQLDPRINRRAFTEEE 69
           +G W   ED ++ ELV  YGP+ W++IA+ ++GR GK CR RW N L+P + + ++TEEE
Sbjct: 89  KGPWTKEEDQRVIELVHKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKSSWTEEE 148

Query: 70  EERLMEAHGMYGNKWAMIARLFPGRTDNAVKNHWHVLMARNCRQ 114
           +  + EAH   GN+WA IA+L PGRTDNA+KNHW+  M R   Q
Sbjct: 149 DRTIYEAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKEEQ 192

[Close]

BLAST of Lsi11G009700 vs. Swiss-Prot
Match: MYB_MOUSE (Transcriptional activator Myb OS=Mus musculus GN=Myb PE=1 SV=2)

HSP 1 Score: 122.9 bits (307), Expect = 3.3e-27
Identity = 51/104 (49.04%), Postives = 72/104 (69.23%), Query Frame = 1


Query: 10  RGHWMPAEDTKLKELVGVYGPQNWNLIAEKVEGRSGKSCRLRWFNQLDPRINRRAFTEEE 69
           +G W   ED ++ ELV  YGP+ W++IA+ ++GR GK CR RW N L+P + + ++TEEE
Sbjct: 92  KGPWTKEEDQRVIELVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEE 151

Query: 70  EERLMEAHGMYGNKWAMIARLFPGRTDNAVKNHWHVLMARNCRQ 114
           +  + +AH   GN+WA IA+L PGRTDNA+KNHW+  M R   Q
Sbjct: 152 DRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKVEQ 195

[Close]

BLAST of Lsi11G009700 vs. TrEMBL
Match: A0A0A0LHV6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G100550 PE=4 SV=1)

HSP 1 Score: 266.2 bits (679), Expect = 2.7e-68
Identity = 128/162 (79.01%), Postives = 137/162 (84.57%), Query Frame = 1


Query: 3   SKSKVCGRGHWMPAEDTKLKELVGVYGPQNWNLIAEKVEGRSGKSCRLRWFNQLDPRINR 62
           SKSKVCGRGHW PAEDTKLKELVG+YGPQNWNLIAEK+EGRSGKSCRLRWFNQLDPRINR
Sbjct: 4   SKSKVCGRGHWRPAEDTKLKELVGLYGPQNWNLIAEKLEGRSGKSCRLRWFNQLDPRINR 63

Query: 63  RAFTEEEEERLMEAHGMYGNKWAMIARLFPGRTDNAVKNHWHVLMARNCRQHFTAYRR-- 122
           +AFTEEEEERLM+AH MYGNKWAMIARLFPGRTDN VKNHWHV+MARNCRQHF++YRR  
Sbjct: 64  KAFTEEEEERLMQAHEMYGNKWAMIARLFPGRTDNGVKNHWHVVMARNCRQHFSSYRRSS 123

Query: 123 RNLTHS----SLPLPLPNAEPQPSSFPASASRANHMPFHFIP 159
           RNLTHS    S  LP P   P       S SR NH+PFH +P
Sbjct: 124 RNLTHSLSIASSALPTPPLPP-----TRSLSRPNHLPFHLLP 160

[Close]

BLAST of Lsi11G009700 vs. TrEMBL
Match: A0A059BGH3_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_G02492 PE=4 SV=1)

HSP 1 Score: 232.3 bits (591), Expect = 4.3e-58
Identity = 106/128 (82.81%), Postives = 115/128 (89.84%), Query Frame = 1


Query: 2   GSKSKVCGRGHWMPAEDTKLKELVGVYGPQNWNLIAEKVEGRSGKSCRLRWFNQLDPRIN 61
           G +SK+C RGHW PAEDTKLKELV +YGPQNWNLIAEK+EGRSGKSCRLRWFNQLDPRIN
Sbjct: 59  GGQSKLCARGHWRPAEDTKLKELVALYGPQNWNLIAEKLEGRSGKSCRLRWFNQLDPRIN 118

Query: 62  RRAFTEEEEERLMEAHGMYGNKWAMIARLFPGRTDNAVKNHWHVLMARNCRQHFTAYRRR 121
           RRAFTEEEEERLM+AH +YGNKWAMIARLFPGRTDNAVKNHWHV+MAR  R+  TAYRRR
Sbjct: 119 RRAFTEEEEERLMQAHRVYGNKWAMIARLFPGRTDNAVKNHWHVIMARKYREQSTAYRRR 178

Query: 122 NLTHSSLP 130
            L+ S  P
Sbjct: 179 KLSLSRSP 186

[Close]

BLAST of Lsi11G009700 vs. TrEMBL
Match: A0A067LAW8_JATCU (MYB family protein OS=Jatropha curcas GN=JCGZ_15621 PE=4 SV=1)

HSP 1 Score: 230.3 bits (586), Expect = 1.6e-57
Identity = 104/123 (84.55%), Postives = 113/123 (91.87%), Query Frame = 1


Query: 4   KSKVCGRGHWMPAEDTKLKELVGVYGPQNWNLIAEKVEGRSGKSCRLRWFNQLDPRINRR 63
           +SK+C RGHW PAEDTKLKELV +YGPQNWNLIAEK+EGRSGKSCRLRWFNQLDPRINRR
Sbjct: 118 QSKLCARGHWRPAEDTKLKELVALYGPQNWNLIAEKLEGRSGKSCRLRWFNQLDPRINRR 177

Query: 64  AFTEEEEERLMEAHGMYGNKWAMIARLFPGRTDNAVKNHWHVLMARNCRQHFTAYRRRNL 123
           AFTEEEEERLM+AH +YGNKWAMIARLFPGRTDNAVKNHWHV+MAR  R+  TAYRRR L
Sbjct: 178 AFTEEEEERLMQAHRLYGNKWAMIARLFPGRTDNAVKNHWHVIMARKYREQSTAYRRRKL 237

Query: 124 THS 127
           + S
Sbjct: 238 SQS 240

[Close]

BLAST of Lsi11G009700 vs. TrEMBL
Match: A0A0D2SAT5_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_013G086400 PE=4 SV=1)

HSP 1 Score: 230.3 bits (586), Expect = 1.6e-57
Identity = 104/123 (84.55%), Postives = 113/123 (91.87%), Query Frame = 1


Query: 4   KSKVCGRGHWMPAEDTKLKELVGVYGPQNWNLIAEKVEGRSGKSCRLRWFNQLDPRINRR 63
           +SK+C RGHW PAEDTKLKELV +YGPQNWNLIAEK+EGRSGKSCRLRWFNQLDPRINRR
Sbjct: 132 QSKLCARGHWRPAEDTKLKELVALYGPQNWNLIAEKLEGRSGKSCRLRWFNQLDPRINRR 191

Query: 64  AFTEEEEERLMEAHGMYGNKWAMIARLFPGRTDNAVKNHWHVLMARNCRQHFTAYRRRNL 123
           AFTEEEEERLM+AH +YGNKWAMIARLFPGRTDNAVKNHWHV+MAR  R+  TAYRRR L
Sbjct: 192 AFTEEEEERLMQAHRLYGNKWAMIARLFPGRTDNAVKNHWHVIMARKYREQSTAYRRRKL 251

Query: 124 THS 127
           + S
Sbjct: 252 SQS 254

[Close]

BLAST of Lsi11G009700 vs. TrEMBL
Match: A0A0B0NX30_GOSAR (Transcription factor MYB44-like protein OS=Gossypium arboreum GN=F383_24437 PE=4 SV=1)

HSP 1 Score: 230.3 bits (586), Expect = 1.6e-57
Identity = 104/123 (84.55%), Postives = 113/123 (91.87%), Query Frame = 1


Query: 4   KSKVCGRGHWMPAEDTKLKELVGVYGPQNWNLIAEKVEGRSGKSCRLRWFNQLDPRINRR 63
           +SK+C RGHW PAEDTKLKELV +YGPQNWNLIAEK+EGRSGKSCRLRWFNQLDPRINRR
Sbjct: 110 QSKLCARGHWRPAEDTKLKELVALYGPQNWNLIAEKLEGRSGKSCRLRWFNQLDPRINRR 169

Query: 64  AFTEEEEERLMEAHGMYGNKWAMIARLFPGRTDNAVKNHWHVLMARNCRQHFTAYRRRNL 123
           AFTEEEEERLM+AH +YGNKWAMIARLFPGRTDNAVKNHWHV+MAR  R+  TAYRRR L
Sbjct: 170 AFTEEEEERLMQAHRLYGNKWAMIARLFPGRTDNAVKNHWHVIMARKYREQSTAYRRRKL 229

Query: 124 THS 127
           + S
Sbjct: 230 SQS 232

[Close]

BLAST of Lsi11G009700 vs. TAIR10
Match: AT1G26780.2 (AT1G26780.2 myb domain protein 117)

HSP 1 Score: 225.7 bits (574), Expect = 2.0e-59
Identity = 108/151 (71.52%), Postives = 120/151 (79.47%), Query Frame = 1


Query: 3   SKSKVCGRGHWMPAEDTKLKELVGVYGPQNWNLIAEKVEGRSGKSCRLRWFNQLDPRINR 62
           SK  V GRGHW PAED KLKELV +YGPQNWNLIAEK++GRSGKSCRLRWFNQLDPRINR
Sbjct: 91  SKPSVLGRGHWRPAEDVKLKELVSIYGPQNWNLIAEKLQGRSGKSCRLRWFNQLDPRINR 150

Query: 63  RAFTEEEEERLMEAHGMYGNKWAMIARLFPGRTDNAVKNHWHVLMARNCRQHFTAYRRRN 122
           RAFTEEEEERLM+AH +YGNKWAMIARLFPGRTDN+VKNHWHV+MAR  R+H +AYRRR 
Sbjct: 151 RAFTEEEEERLMQAHRLYGNKWAMIARLFPGRTDNSVKNHWHVVMARKYREHSSAYRRRK 210

Query: 123 LTHSS--LPLPLPNAEPQPSSFPASASRANH 152
           L  ++   P    N  P P+    S    NH
Sbjct: 211 LMSNNPLKPHLTNNHHPNPNPNYHSFISTNH 241

[Close]

BLAST of Lsi11G009700 vs. TAIR10
Match: AT1G69560.1 (AT1G69560.1 myb domain protein 105)

HSP 1 Score: 220.3 bits (560), Expect = 8.5e-58
Identity = 104/132 (78.79%), Postives = 114/132 (86.36%), Query Frame = 1


Query: 3   SKSKVCGRGHWMPAEDTKLKELVGVYGPQNWNLIAEKVEGRSGKSCRLRWFNQLDPRINR 62
           SK+ V  RGHW PAEDTKLKELV VYGPQNWNLIAEK++GRSGKSCRLRWFNQLDPRINR
Sbjct: 101 SKASV-SRGHWRPAEDTKLKELVAVYGPQNWNLIAEKLQGRSGKSCRLRWFNQLDPRINR 160

Query: 63  RAFTEEEEERLMEAHGMYGNKWAMIARLFPGRTDNAVKNHWHVLMARNCRQHFTAYRRRN 122
           RAFTEEEEERLM+AH +YGNKWAMIARLFPGRTDN+VKNHWHV+MAR  R+  ++YRRR 
Sbjct: 161 RAFTEEEEERLMQAHRLYGNKWAMIARLFPGRTDNSVKNHWHVIMARKFREQSSSYRRRK 220

Query: 123 LTHSSLPLPLPN 135
              S  PL  PN
Sbjct: 221 TMVSLKPLINPN 231

[Close]

BLAST of Lsi11G009700 vs. TAIR10
Match: AT5G17800.1 (AT5G17800.1 myb domain protein 56)

HSP 1 Score: 193.0 bits (489), Expect = 1.5e-49
Identity = 85/112 (75.89%), Postives = 95/112 (84.82%), Query Frame = 1


Query: 2   GSKSKVCGRGHWMPAEDTKLKELVGVYGPQNWNLIAEKVEGRSGKSCRLRWFNQLDPRIN 61
           G  +KVC RGHW P ED KLKELV  +GPQNWNLI+  + GRSGKSCRLRWFNQLDPRIN
Sbjct: 85  GINTKVCSRGHWRPTEDAKLKELVAQFGPQNWNLISNHLLGRSGKSCRLRWFNQLDPRIN 144

Query: 62  RRAFTEEEEERLMEAHGMYGNKWAMIARLFPGRTDNAVKNHWHVLMARNCRQ 114
           +RAFTEEEE RL+ AH  YGNKWA+I+RLFPGRTDNAVKNHWHV+MAR  R+
Sbjct: 145 KRAFTEEEEFRLLAAHRAYGNKWALISRLFPGRTDNAVKNHWHVIMARRTRE 196

[Close]

BLAST of Lsi11G009700 vs. TAIR10
Match: AT3G29020.2 (AT3G29020.2 myb domain protein 110)

HSP 1 Score: 193.0 bits (489), Expect = 1.5e-49
Identity = 86/119 (72.27%), Postives = 102/119 (85.71%), Query Frame = 1


Query: 3   SKSKVCGRGHWMPAEDTKLKELVGVYGPQNWNLIAEKVEGRSGKSCRLRWFNQLDPRINR 62
           S S+VC RGHW  +EDT+L ELV VYGPQNWN IAE ++GR+GKSCRLRWFNQLDPRIN+
Sbjct: 60  SVSRVCSRGHWRISEDTQLMELVSVYGPQNWNHIAESMQGRTGKSCRLRWFNQLDPRINK 119

Query: 63  RAFTEEEEERLMEAHGMYGNKWAMIARLFPGRTDNAVKNHWHVLMARNCRQHFTAYRRR 122
           RAF++EEEERL+ AH  +GNKWAMIA+LF GRTDNA+KNHWHVLMAR  RQ  ++Y +R
Sbjct: 120 RAFSDEEEERLLAAHRAFGNKWAMIAKLFNGRTDNALKNHWHVLMARKMRQQSSSYVQR 178

[Close]

BLAST of Lsi11G009700 vs. TAIR10
Match: AT1G73410.1 (AT1G73410.1 myb domain protein 54)

HSP 1 Score: 187.2 bits (474), Expect = 8.0e-48
Identity = 82/107 (76.64%), Postives = 92/107 (85.98%), Query Frame = 1


Query: 7   VCGRGHWMPAEDTKLKELVGVYGPQNWNLIAEKVEGRSGKSCRLRWFNQLDPRINRRAFT 66
           +C RGHW PAED KLK+LV  YGP NWN IA K+ GRSGKSCRLRWFNQLDPRINR  FT
Sbjct: 3   MCSRGHWRPAEDEKLKDLVEQYGPHNWNAIALKLPGRSGKSCRLRWFNQLDPRINRNPFT 62

Query: 67  EEEEERLMEAHGMYGNKWAMIARLFPGRTDNAVKNHWHVLMARNCRQ 114
           EEEEERL+ AH ++GN+W++IARLFPGRTDNAVKNHWHV+MAR  RQ
Sbjct: 63  EEEEERLLAAHRIHGNRWSIIARLFPGRTDNAVKNHWHVIMARRTRQ 109

[Close]

BLAST of Lsi11G009700 vs. NCBI nr
Match: gi|449442435|ref|XP_004138987.1| (PREDICTED: transcription factor MYB44 [Cucumis sativus])

HSP 1 Score: 266.2 bits (679), Expect = 3.8e-68
Identity = 128/162 (79.01%), Postives = 137/162 (84.57%), Query Frame = 1


Query: 3   SKSKVCGRGHWMPAEDTKLKELVGVYGPQNWNLIAEKVEGRSGKSCRLRWFNQLDPRINR 62
           SKSKVCGRGHW PAEDTKLKELVG+YGPQNWNLIAEK+EGRSGKSCRLRWFNQLDPRINR
Sbjct: 4   SKSKVCGRGHWRPAEDTKLKELVGLYGPQNWNLIAEKLEGRSGKSCRLRWFNQLDPRINR 63

Query: 63  RAFTEEEEERLMEAHGMYGNKWAMIARLFPGRTDNAVKNHWHVLMARNCRQHFTAYRR-- 122
           +AFTEEEEERLM+AH MYGNKWAMIARLFPGRTDN VKNHWHV+MARNCRQHF++YRR  
Sbjct: 64  KAFTEEEEERLMQAHEMYGNKWAMIARLFPGRTDNGVKNHWHVVMARNCRQHFSSYRRSS 123

Query: 123 RNLTHS----SLPLPLPNAEPQPSSFPASASRANHMPFHFIP 159
           RNLTHS    S  LP P   P       S SR NH+PFH +P
Sbjct: 124 RNLTHSLSIASSALPTPPLPP-----TRSLSRPNHLPFHLLP 160

[Close]

BLAST of Lsi11G009700 vs. NCBI nr
Match: gi|659082191|ref|XP_008441713.1| (PREDICTED: transcription factor MYB44 [Cucumis melo])

HSP 1 Score: 260.8 bits (665), Expect = 1.6e-66
Identity = 125/161 (77.64%), Postives = 139/161 (86.34%), Query Frame = 1


Query: 2   GSKSKVCGRGHWMPAEDTKLKELVGVYGPQNWNLIAEKVEGRSGKSCRLRWFNQLDPRIN 61
           GSKSKVCGRGHW P EDTKLKELVG+YGPQNWNLIA+K+EGRSGKSCRLRWFNQLDPRIN
Sbjct: 3   GSKSKVCGRGHWRPPEDTKLKELVGLYGPQNWNLIAQKLEGRSGKSCRLRWFNQLDPRIN 62

Query: 62  RRAFTEEEEERLMEAHGMYGNKWAMIARLFPGRTDNAVKNHWHVLMARNCRQHFTAYRR- 121
           R+AF+EEEEERLM+AH +YGNKWAMIARLFPGRTDN VKNHWHV+MARNCRQHF++YRR 
Sbjct: 63  RKAFSEEEEERLMQAHEIYGNKWAMIARLFPGRTDNGVKNHWHVVMARNCRQHFSSYRRS 122

Query: 122 -RNLTHSSLPLPLPNAEPQPSSFPA--SASRANHMPFHFIP 159
            RNL H SL +   +A P PS  P   S SR NH+PFH +P
Sbjct: 123 SRNLAH-SLSI-ASSALPTPSLLPTARSLSRPNHLPFHLLP 161

[Close]

BLAST of Lsi11G009700 vs. NCBI nr
Match: gi|629099181|gb|KCW64946.1| (hypothetical protein EUGRSUZ_G02492 [Eucalyptus grandis])

HSP 1 Score: 232.3 bits (591), Expect = 6.1e-58
Identity = 106/128 (82.81%), Postives = 115/128 (89.84%), Query Frame = 1


Query: 2   GSKSKVCGRGHWMPAEDTKLKELVGVYGPQNWNLIAEKVEGRSGKSCRLRWFNQLDPRIN 61
           G +SK+C RGHW PAEDTKLKELV +YGPQNWNLIAEK+EGRSGKSCRLRWFNQLDPRIN
Sbjct: 59  GGQSKLCARGHWRPAEDTKLKELVALYGPQNWNLIAEKLEGRSGKSCRLRWFNQLDPRIN 118

Query: 62  RRAFTEEEEERLMEAHGMYGNKWAMIARLFPGRTDNAVKNHWHVLMARNCRQHFTAYRRR 121
           RRAFTEEEEERLM+AH +YGNKWAMIARLFPGRTDNAVKNHWHV+MAR  R+  TAYRRR
Sbjct: 119 RRAFTEEEEERLMQAHRVYGNKWAMIARLFPGRTDNAVKNHWHVIMARKYREQSTAYRRR 178

Query: 122 NLTHSSLP 130
            L+ S  P
Sbjct: 179 KLSLSRSP 186

[Close]

BLAST of Lsi11G009700 vs. NCBI nr
Match: gi|702430770|ref|XP_010068785.1| (PREDICTED: transcription factor MYB122-like [Eucalyptus grandis])

HSP 1 Score: 232.3 bits (591), Expect = 6.1e-58
Identity = 106/128 (82.81%), Postives = 115/128 (89.84%), Query Frame = 1


Query: 2   GSKSKVCGRGHWMPAEDTKLKELVGVYGPQNWNLIAEKVEGRSGKSCRLRWFNQLDPRIN 61
           G +SK+C RGHW PAEDTKLKELV +YGPQNWNLIAEK+EGRSGKSCRLRWFNQLDPRIN
Sbjct: 99  GGQSKLCARGHWRPAEDTKLKELVALYGPQNWNLIAEKLEGRSGKSCRLRWFNQLDPRIN 158

Query: 62  RRAFTEEEEERLMEAHGMYGNKWAMIARLFPGRTDNAVKNHWHVLMARNCRQHFTAYRRR 121
           RRAFTEEEEERLM+AH +YGNKWAMIARLFPGRTDNAVKNHWHV+MAR  R+  TAYRRR
Sbjct: 159 RRAFTEEEEERLMQAHRVYGNKWAMIARLFPGRTDNAVKNHWHVIMARKYREQSTAYRRR 218

Query: 122 NLTHSSLP 130
            L+ S  P
Sbjct: 219 KLSLSRSP 226

[Close]

BLAST of Lsi11G009700 vs. NCBI nr
Match: gi|729392008|ref|XP_010552570.1| (PREDICTED: uncharacterized protein LOC104822908 [Tarenaya hassleriana])

HSP 1 Score: 230.7 bits (587), Expect = 1.8e-57
Identity = 107/139 (76.98%), Postives = 120/139 (86.33%), Query Frame = 1


Query: 3   SKSKVCGRGHWMPAEDTKLKELVGVYGPQNWNLIAEKVEGRSGKSCRLRWFNQLDPRINR 62
           SK+ +  RGHW PAED KL+ELV VYGPQNWNLIAEK+ GRSGKSCRLRWFNQLDPRINR
Sbjct: 119 SKANI-SRGHWKPAEDNKLRELVAVYGPQNWNLIAEKLHGRSGKSCRLRWFNQLDPRINR 178

Query: 63  RAFTEEEEERLMEAHGMYGNKWAMIARLFPGRTDNAVKNHWHVLMARNCRQHFTAYRRRN 122
           RAFTEEEEERLM+AH +YGNKWAMI+RLFPGRTDNAVKNHWHV+MAR  R+H TAYRRR 
Sbjct: 179 RAFTEEEEERLMQAHRLYGNKWAMISRLFPGRTDNAVKNHWHVIMARKYREHSTAYRRRK 238

Query: 123 -LTHSSLPLPLPNAEPQPS 141
            +T   LP P+PN +P P+
Sbjct: 239 MITLKPLPKPIPNPDPSPN 256

The following BLAST results are available for this feature:

BLAST of Lsi11G009700 vs. Swiss-Prot


Match Name	E-value	Identity	Description
MYB44_ARATH	3.4e-32	56.86	Transcription factor MYB44 OS=Arabidopsis thaliana GN=MYB44 PE=2 SV=1	[more]
MYBA_HUMAN	1.5e-27	50.00	Myb-related protein A OS=Homo sapiens GN=MYBL1 PE=1 SV=2	[more]
MYBA_MOUSE	1.5e-27	50.00	Myb-related protein A OS=Mus musculus GN=Mybl1 PE=1 SV=2	[more]
MYB_XENLA	1.9e-27	50.00	Transcriptional activator Myb OS=Xenopus laevis GN=myb PE=2 SV=1	[more]
MYB_MOUSE	3.3e-27	49.04	Transcriptional activator Myb OS=Mus musculus GN=Myb PE=1 SV=2	[more]

BLAST of Lsi11G009700 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LHV6_CUCSA	2.7e-68	79.01	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G100550 PE=4 SV=1	[more]
A0A059BGH3_EUCGR	4.3e-58	82.81	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_G02492 PE=4 SV=1	[more]
A0A067LAW8_JATCU	1.6e-57	84.55	MYB family protein OS=Jatropha curcas GN=JCGZ_15621 PE=4 SV=1	[more]
A0A0D2SAT5_GOSRA	1.6e-57	84.55	Uncharacterized protein OS=Gossypium raimondii GN=B456_013G086400 PE=4 SV=1	[more]
A0A0B0NX30_GOSAR	1.6e-57	84.55	Transcription factor MYB44-like protein OS=Gossypium arboreum GN=F383_24437 PE=4...	[more]

BLAST of Lsi11G009700 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G26780.2	2.0e-59	71.52	myb domain protein 117	[more]
AT1G69560.1	8.5e-58	78.79	myb domain protein 105	[more]
AT5G17800.1	1.5e-49	75.89	myb domain protein 56	[more]
AT3G29020.2	1.5e-49	72.27	myb domain protein 110	[more]
AT1G73410.1	8.0e-48	76.64	myb domain protein 54	[more]

BLAST of Lsi11G009700 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449442435\|ref\|XP_004138987.1\|	3.8e-68	79.01	PREDICTED: transcription factor MYB44 [Cucumis sativus]	[more]
gi\|659082191\|ref\|XP_008441713.1\|	1.6e-66	77.64	PREDICTED: transcription factor MYB44 [Cucumis melo]	[more]
gi\|629099181\|gb\|KCW64946.1\|	6.1e-58	82.81	hypothetical protein EUGRSUZ_G02492 [Eucalyptus grandis]	[more]
gi\|702430770\|ref\|XP_010068785.1\|	6.1e-58	82.81	PREDICTED: transcription factor MYB122-like [Eucalyptus grandis]	[more]
gi\|729392008\|ref\|XP_010552570.1\|	1.8e-57	76.98	PREDICTED: uncharacterized protein LOC104822908 [Tarenaya hassleriana]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding

Vocabulary: **INTERPRO**
Term	Definition
IPR017930	Myb_dom
IPR009057	Homeobox-like_sf
IPR001005	SANT/Myb

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0000785	chromatin
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003682	chromatin binding
molecular_function	GO:0003677	DNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi11G009700.1	Lsi11G009700.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001005	SANT/Myb domain	PFAM	PF00249	Myb_DNA-binding	coord: 62..106 score: 3.9E-15coord: 10..55 score: 6.4
IPR001005	SANT/Myb domain	SMART	SM00717	sant	coord: 9..58 score: 5.7E-12coord: 61..109 score: 2.5
IPR009057	Homeodomain-like	GENE3D	G3DSA:1.10.10.60		coord: 64..110 score: 2.7E-21coord: 11..63 score: 1.6
IPR009057	Homeodomain-like	unknown	SSF46689	Homeodomain-like	coord: 10..103 score: 9.54
IPR017930	Myb domain	PROFILE	PS51294	HTH_MYB	coord: 5..56 score: 16.652coord: 57..111 score: 2
None	No IPR available	PANTHER	PTHR10641	MYB-LIKE DNA-BINDING PROTEIN MYB	coord: 10..127 score: 1.1
None	No IPR available	PANTHER	PTHR10641:SF473	MYB TRANSCRIPTION FACTOR	coord: 10..127 score: 1.1

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi11G009700	Csa2G100550	Cucumber (Chinese Long) v2	culsiB098
Lsi11G009700	CSPI02G08240	Wild cucumber (PI 183967)	cpilsiB096
Lsi11G009700	Cucsa.189540	Cucumber (Gy14) v1	cgylsiB324
Lsi11G009700	CmaCh01G004780	Cucurbita maxima (Rimu)	cmalsiB404
Lsi11G009700	CmaCh05G008630	Cucurbita maxima (Rimu)	cmalsiB716
Lsi11G009700	CmoCh01G005140	Cucurbita moschata (Rifu)	cmolsiB389
Lsi11G009700	ClCG11G007320	Watermelon (Charleston Gray)	lsiwcgB082
Lsi11G009700	MELO3C008549.2	Melon (DHL92) v3.6.1	lsimedB125
Lsi11G009700	Cla97C11G216040	Watermelon (97103) v2	lsiwmbB078
Lsi11G009700	Cp4.1LG11g07170	Cucurbita pepo (Zucchini)	cpelsiB077
Lsi11G009700	CsGy2G008510	Cucumber (Gy14) v2	cgyblsiB089
Lsi11G009700	Carg20425	Silver-seed gourd	carlsiB639
Lsi11G009700	CsaV3_2G010610	Cucumber (Chinese Long) v3	cuclsiB108

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi11G009700	Cucurbita moschata (Rifu)	cmolsiB703
Lsi11G009700	Cucurbita pepo (Zucchini)	cpelsiB437
Lsi11G009700	Melon (DHL92) v3.5.1	lsimeB117
Lsi11G009700	Watermelon (Charleston Gray)	lsiwcgB086
Lsi11G009700	Watermelon (Charleston Gray)	lsiwcgB081
Lsi11G009700	Watermelon (97103) v1	lsiwmB113
Lsi11G009700	Watermelon (97103) v1	lsiwmB119
Lsi11G009700	Silver-seed gourd	carlsiB975
Lsi11G009700	Watermelon (97103) v2	lsiwmbB075
Lsi11G009700	Wax gourd	lsiwgoB111