CmoCh01G004070 (gene) Cucurbita moschata (Rifu)

NameCmoCh01G004070
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionRegulator of Vps4 activity in the MVB pathway protein, putative
LocationCmo_Chr01 : 1989536 .. 1991061 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
GCAGCAACCAACAGCAAAACAGTACCTCATTCAAGAGCTTCTCACAGAAAAACAGGCAGCAAAAAAGAATCTTCAATCATGGGAAGGAAACTGGATGCTCTACTGGGAAGGAATAGATATTTGAAGCCTTCCAAGTTCAAGGCCCTTGCTAATATGGCCATTTCTAGGACTGCCATCCTCAAGAATCAGCACCAAGCTCGCTGCTCTCTTGCCCAGCCTGACGTTCTTCAGCTCTTGAACCTTGCTTTCCAACCACGCTCTCAGCTTAGAGTAATTTGTTTCTCTATCTCTATCAGTTCAGCTTCTTTTCTGTCTTCTTATGAGTATAATTTGCATGCTAAGCTTGGATGCATGGGATCCCCTGGTGAAGTGAAGGAGGTGAAGTGAGGGAGGTAGTATCGAGTCTGATCTTTGAGGCTTCAAGGTGCAGAGAGTTTCCAGAACTTCAGGAGATTTGTCGGATTTCAAAGTTGAAATTTGGGATAGTTAATAGCTAAAGCTCACTGCTAGCAAATATTGTCCTCTTTGACCTTTCCCTTTCGACATGGGATCTCACAATCCACCCCCTTCAAAACCTAGCGTCCTCGCTGGCACACCGCTCGGTGCCTAGCTCTGATACCATTTGTAAAAGCCTGTAGTAGCCTAAGCCCACCGCTAAGGTGAGGTTGAAATTAACTGCAAGAACAGAATTAGTTGCCTGCACATATCACTTACTAACCACAACTTCATGTTACAGATGATCCAAAGTTTTCAAGAAGACAGCCCAGCGCAGAAACTAAGCTGAAAGTGCTGAAGGAAATTGCTTTTGAGAACGGCATCACTCTGCATTTAGAAAAAGAACCTACAGTAATCATCAAGGTAAGGAATGTTTCCACTTTTGAAGTATATTTTTAGTAAAATTCATCGGTTAACTGCAGGAAAAGCTAAACCAGAAGCTGGAAGCCAAGAAATCAGCAAACTTGGATAATCCTGAAGTCATAAACACAAGTGACGAATCAGTATCAGAATCAGTGAGAGCAAAGAAGTTTAAAGACGTAGCTAGTGCAGCTCAAGACGCCTTCCAAGCAACAAAAGCTGAAATCGAGTTTTCGAGGTCTCAATCACAGGATATCGATATAGATCATGAAGATGGCTCTTATTTTCACAAAAATGAAAAAGCCTCAAATATGGATAGTTCTCACAAATCCAAGCTTAATGCAGAAGAAGCTAGCATACCTTCCAGTAAGATTGACCATTCAGACGATTTTAGTTTTGAAAATACTCATCTTGTTGAACTTGAAAGCTGCAGTTCAGAATATAAATACATAGAAGATAATCAAGAAGAATCACCAGCTGAACCTGCCAAAGAAAATATGTCATCTGTTCCAAATTTGGATTCAGATATTAGCAATCTCAAGGAGAAATCATCAAATTCAAATTCAATCTTCCACAATGAACCAGGAAATGACAGGTTAATCAGTAAAGAAGAGTTTGCCAGTAAAAATGAAATTTCAGATGAGGATATCAGAGCTCATGCATTGAAGTAA

mRNA sequence

GCAGCAACCAACAGCAAAACAGTACCTCATTCAAGAGCTTCTCACAGAAAAACAGGCAGCAAAAAAGAATCTTCAATCATGGGAAGGAAACTGGATGCTCTACTGGGAAGGAATAGATATTTGAAGCCTTCCAAGTTCAAGGCCCTTGCTAATATGGCCATTTCTAGGACTGCCATCCTCAAGAATCAGCACCAAGCTCGCTGCTCTCTTGCCCAGCCTGACGTTCTTCAGCTCTTGAACCTTGCTTTCCAACCACGCTCTCAGCTTAGACTTGGATGCATGGGATCCCCTGGTGAAGTGAAGGAGGAAAAGCTAAACCAGAAGCTGGAAGCCAAGAAATCAGCAAACTTGGATAATCCTGAAGTCATAAACACAAGTGACGAATCAGTATCAGAATCAGTGAGAGCAAAGAAGTTTAAAGACGTAGCTAGTGCAGCTCAAGACGCCTTCCAAGCAACAAAAGCTGAAATCGAGTTTTCGAGGTCTCAATCACAGGATATCGATATAGATCATGAAGATGGCTCTTATTTTCACAAAAATGAAAAAGCCTCAAATATGGATAGTTCTCACAAATCCAAGCTTAATGCAGAAGAAGCTAGCATACCTTCCAGTAAGATTGACCATTCAGACGATTTTAGTTTTGAAAATACTCATCTTGTTGAACTTGAAAGCTGCAGTTCAGAATATAAATACATAGAAGATAATCAAGAAGAATCACCAGCTGAACCTGCCAAAGAAAATATGTCATCTGTTCCAAATTTGGATTCAGATATTAGCAATCTCAAGGAGAAATCATCAAATTCAAATTCAATCTTCCACAATGAACCAGGAAATGACAGGTTAATCAGTAAAGAAGAGTTTGCCAGTAAAAATGAAATTTCAGATGAGGATATCAGAGCTCATGCATTGAAGTAA

Coding sequence (CDS)

ATGGGAAGGAAACTGGATGCTCTACTGGGAAGGAATAGATATTTGAAGCCTTCCAAGTTCAAGGCCCTTGCTAATATGGCCATTTCTAGGACTGCCATCCTCAAGAATCAGCACCAAGCTCGCTGCTCTCTTGCCCAGCCTGACGTTCTTCAGCTCTTGAACCTTGCTTTCCAACCACGCTCTCAGCTTAGACTTGGATGCATGGGATCCCCTGGTGAAGTGAAGGAGGAAAAGCTAAACCAGAAGCTGGAAGCCAAGAAATCAGCAAACTTGGATAATCCTGAAGTCATAAACACAAGTGACGAATCAGTATCAGAATCAGTGAGAGCAAAGAAGTTTAAAGACGTAGCTAGTGCAGCTCAAGACGCCTTCCAAGCAACAAAAGCTGAAATCGAGTTTTCGAGGTCTCAATCACAGGATATCGATATAGATCATGAAGATGGCTCTTATTTTCACAAAAATGAAAAAGCCTCAAATATGGATAGTTCTCACAAATCCAAGCTTAATGCAGAAGAAGCTAGCATACCTTCCAGTAAGATTGACCATTCAGACGATTTTAGTTTTGAAAATACTCATCTTGTTGAACTTGAAAGCTGCAGTTCAGAATATAAATACATAGAAGATAATCAAGAAGAATCACCAGCTGAACCTGCCAAAGAAAATATGTCATCTGTTCCAAATTTGGATTCAGATATTAGCAATCTCAAGGAGAAATCATCAAATTCAAATTCAATCTTCCACAATGAACCAGGAAATGACAGGTTAATCAGTAAAGAAGAGTTTGCCAGTAAAAATGAAATTTCAGATGAGGATATCAGAGCTCATGCATTGAAGTAA
BLAST of CmoCh01G004070 vs. TrEMBL
Match: A0A0A0L6Y2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G271380 PE=4 SV=1)

HSP 1 Score: 171.0 bits (432), Expect = 2.0e-39
Identity = 118/222 (53.15%), Postives = 149/222 (67.12%), Query Frame = 1

Query: 78  KLNQKLEAKKSANLDNPEVINTSDE---------SVSESVRAKKFKDVASAAQDAFQ--- 137
           K NQKLE KK A+L NPEV NT+D+           SE V++KKFKDVASA ++ FQ   
Sbjct: 199 KQNQKLEIKKEADLYNPEVTNTTDDLHEVITSEKMASELVKSKKFKDVASATEEPFQSAA 258

Query: 138 ----ATKAEIEFSRSQSQDIDIDHEDGSYFHKNEKASNMDSSHKSKLNAEEASIPSSKID 197
               A KA I  S+S+SQDID DHEDGS+  KN K S+++SS++ KLN +E  I S KID
Sbjct: 259 YAALAAKAAINLSKSKSQDIDSDHEDGSHLQKNGKGSDLNSSYEPKLNTKEERISSCKID 318

Query: 198 HSDD-FSFENTHLVELESCSSEYK---YIEDNQEESPAEPAKENMSSVPNLDSDISNLKE 257
           +SDD FSFE    VELESCSS+Y+     E NQEE P EPAKE+ +S    DSD++N+KE
Sbjct: 319 YSDDRFSFEKICPVELESCSSQYEDADMEETNQEELPKEPAKES-TSFALKDSDVNNMKE 378

Query: 258 KSSNSNSIFHNEPGNDRLISKE-EFASKNEISDEDIRAHALK 279
           +SS  NSIF+NE   D++ + + E AS  EIS+EDIR H  K
Sbjct: 379 QSSKPNSIFYNESDGDKITNTDNEVASGKEISEEDIRVHESK 419

BLAST of CmoCh01G004070 vs. TrEMBL
Match: M1AZM5_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400012974 PE=4 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 3.2e-13
Identity = 45/65 (69.23%), Postives = 52/65 (80.00%), Query Frame = 1

Query: 1  MGRKLDALLGRNRYLKPSKFKALANMAISRTAILKNQHQARCSLAQPDVLQLLNLAFQPR 60
          MGRKLDALLGRN   K SKFKA AN+AISR  +LKNQ QARCS+A+ DV+QLLNL F  R
Sbjct: 1  MGRKLDALLGRN--FKISKFKATANLAISRVTVLKNQRQARCSIARSDVVQLLNLGFHER 60

Query: 61 SQLRL 66
          + LR+
Sbjct: 61 ALLRV 63

BLAST of CmoCh01G004070 vs. TrEMBL
Match: K4BXC9_SOLLC (Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 4.2e-13
Identity = 44/65 (67.69%), Postives = 52/65 (80.00%), Query Frame = 1

Query: 1  MGRKLDALLGRNRYLKPSKFKALANMAISRTAILKNQHQARCSLAQPDVLQLLNLAFQPR 60
          MGRKLDALLGRN   K SKFKA AN+AISR  +LKNQ QARCS+A+ DV+QLLNL +  R
Sbjct: 1  MGRKLDALLGRN--FKTSKFKATANLAISRVTVLKNQRQARCSIARSDVVQLLNLGYHER 60

Query: 61 SQLRL 66
          + LR+
Sbjct: 61 ALLRV 63

BLAST of CmoCh01G004070 vs. TrEMBL
Match: A0A061EIJ4_THECC (Regulator of Vps4 activity in the MVB pathway protein, putative OS=Theobroma cacao GN=TCM_019471 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 6.8e-11
Identity = 49/88 (55.68%), Postives = 58/88 (65.91%), Query Frame = 1

Query: 1  MGRKLDALLGRNRYLKPSKFKALANMAISRTAILKNQHQARCSLAQPDVLQLLNLAFQPR 60
          MGRKLDALLGRN   K SKFK LA +AISR AILKNQHQ R S A+ DV+ LLNL  Q R
Sbjct: 1  MGRKLDALLGRN--FKASKFKTLAKLAISRIAILKNQHQVRFSHARSDVIDLLNLGHQER 60

Query: 61 SQLRLGCMGSPGEVKEEKLNQKLEAKKS 89
          + LR+  +     +KE+ L   L   +S
Sbjct: 61 ALLRVEHV-----IKEQNLVDALTIMES 81

BLAST of CmoCh01G004070 vs. TrEMBL
Match: A0A0D2TK38_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G233300 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 6.8e-11
Identity = 41/65 (63.08%), Postives = 49/65 (75.38%), Query Frame = 1

Query: 1  MGRKLDALLGRNRYLKPSKFKALANMAISRTAILKNQHQARCSLAQPDVLQLLNLAFQPR 60
          MGRKLDALLGRN   K SKFK LA +AISR  ILKNQHQ RC+ A+ DV++LLNL    +
Sbjct: 1  MGRKLDALLGRN--FKASKFKTLAKLAISRIGILKNQHQVRCTHARSDVIELLNLGHHEQ 60

Query: 61 SQLRL 66
          + LR+
Sbjct: 61 ALLRV 63

BLAST of CmoCh01G004070 vs. TAIR10
Match: AT1G13340.1 (AT1G13340.1 Regulator of Vps4 activity in the MVB pathway protein)

HSP 1 Score: 57.0 bits (136), Expect = 2.1e-08
Identity = 32/55 (58.18%), Postives = 41/55 (74.55%), Query Frame = 1

Query: 1  MGRKLDALLGRNRYLKPSKFKALANMAISRTAILKNQHQARCSLAQPDVLQLLNL 56
          MG+KLDALLGR+   K +KFK+L  +A++R +ILKNQ QAR S A  DV +LL L
Sbjct: 1  MGKKLDALLGRS--FKTNKFKSLITLALTRLSILKNQRQARLSQAISDVTELLKL 53

BLAST of CmoCh01G004070 vs. NCBI nr
Match: gi|659123287|ref|XP_008461584.1| (PREDICTED: uncharacterized protein LOC103500154 [Cucumis melo])

HSP 1 Score: 196.1 bits (497), Expect = 8.4e-47
Identity = 128/222 (57.66%), Postives = 159/222 (71.62%), Query Frame = 1

Query: 71  PGEVKEEKLNQKLEAKKSANLDNPEVINTSDES---------VSESVRAKKFKDVASAAQ 130
           P  + +EKLNQKLE KK A+L NPEV NT+D+           SE V+AKKFKDVASAA+
Sbjct: 192 PPIIVKEKLNQKLEVKKEADLYNPEVTNTTDDLHEVITSEKLASELVKAKKFKDVASAAE 251

Query: 131 DAFQATKAEIEFSRSQSQDIDIDHEDGSYFHKNEKASNMDSSHKSKLNAEEASIPSSKID 190
           +AFQ+    I F +S+SQDID DHEDGS+  KN K+S ++SS++SKLN +EASIPSSKID
Sbjct: 252 EAFQSAAKAINFLKSESQDIDSDHEDGSHLQKNGKSSELNSSYESKLNTKEASIPSSKID 311

Query: 191 HSDD-FSFENTHLVELESCSSEYK---YIEDNQEESPAEPAKENMSSVPNLDSDISNLKE 250
           +SDD FSFE    V LESCSS+Y+     E NQEE P EPA E+ SSV NL SDI+N KE
Sbjct: 312 YSDDRFSFEKICPVGLESCSSQYEDADMEETNQEELPKEPAIESTSSVLNLCSDINNTKE 371

Query: 251 KSSNSNSIFHNEPGNDRLISKE-EFASKNEISDEDIRAHALK 279
           +SS  NS F+NE   D++ISK+ E AS  EIS+E+I+ H  K
Sbjct: 372 QSSEPNSTFYNESDGDKIISKDNEVASGKEISEENIKVHEPK 413

BLAST of CmoCh01G004070 vs. NCBI nr
Match: gi|778680668|ref|XP_011651369.1| (PREDICTED: uncharacterized protein LOC105434874 isoform X1 [Cucumis sativus])

HSP 1 Score: 171.0 bits (432), Expect = 2.9e-39
Identity = 118/222 (53.15%), Postives = 149/222 (67.12%), Query Frame = 1

Query: 78  KLNQKLEAKKSANLDNPEVINTSDE---------SVSESVRAKKFKDVASAAQDAFQ--- 137
           K NQKLE KK A+L NPEV NT+D+           SE V++KKFKDVASA ++ FQ   
Sbjct: 199 KQNQKLEIKKEADLYNPEVTNTTDDLHEVITSEKMASELVKSKKFKDVASATEEPFQSAA 258

Query: 138 ----ATKAEIEFSRSQSQDIDIDHEDGSYFHKNEKASNMDSSHKSKLNAEEASIPSSKID 197
               A KA I  S+S+SQDID DHEDGS+  KN K S+++SS++ KLN +E  I S KID
Sbjct: 259 YAALAAKAAINLSKSKSQDIDSDHEDGSHLQKNGKGSDLNSSYEPKLNTKEERISSCKID 318

Query: 198 HSDD-FSFENTHLVELESCSSEYK---YIEDNQEESPAEPAKENMSSVPNLDSDISNLKE 257
           +SDD FSFE    VELESCSS+Y+     E NQEE P EPAKE+ +S    DSD++N+KE
Sbjct: 319 YSDDRFSFEKICPVELESCSSQYEDADMEETNQEELPKEPAKES-TSFALKDSDVNNMKE 378

Query: 258 KSSNSNSIFHNEPGNDRLISKE-EFASKNEISDEDIRAHALK 279
           +SS  NSIF+NE   D++ + + E AS  EIS+EDIR H  K
Sbjct: 379 QSSKPNSIFYNESDGDKITNTDNEVASGKEISEEDIRVHESK 419

BLAST of CmoCh01G004070 vs. NCBI nr
Match: gi|778680671|ref|XP_011651370.1| (PREDICTED: uncharacterized protein LOC105434874 isoform X2 [Cucumis sativus])

HSP 1 Score: 105.1 bits (261), Expect = 2.0e-19
Identity = 53/65 (81.54%), Postives = 60/65 (92.31%), Query Frame = 1

Query: 1  MGRKLDALLGRNRYLKPSKFKALANMAISRTAILKNQHQARCSLAQPDVLQLLNLAFQPR 60
          MGRKLDALLGRNRYLK SKFK LANMAISRT+ILKN H+ARCSLA+ DVLQLLNL++Q R
Sbjct: 1  MGRKLDALLGRNRYLKASKFKTLANMAISRTSILKNHHRARCSLARADVLQLLNLSYQHR 60

Query: 61 SQLRL 66
          +QLR+
Sbjct: 61 AQLRV 65

BLAST of CmoCh01G004070 vs. NCBI nr
Match: gi|565393805|ref|XP_006362561.1| (PREDICTED: uncharacterized protein LOC102592415 [Solanum tuberosum])

HSP 1 Score: 84.0 bits (206), Expect = 4.7e-13
Identity = 45/65 (69.23%), Postives = 52/65 (80.00%), Query Frame = 1

Query: 1  MGRKLDALLGRNRYLKPSKFKALANMAISRTAILKNQHQARCSLAQPDVLQLLNLAFQPR 60
          MGRKLDALLGRN   K SKFKA AN+AISR  +LKNQ QARCS+A+ DV+QLLNL F  R
Sbjct: 1  MGRKLDALLGRN--FKISKFKATANLAISRVTVLKNQRQARCSIARSDVVQLLNLGFHER 60

Query: 61 SQLRL 66
          + LR+
Sbjct: 61 ALLRV 63

BLAST of CmoCh01G004070 vs. NCBI nr
Match: gi|970027309|ref|XP_015074961.1| (PREDICTED: uncharacterized protein LOC107018888 [Solanum pennellii])

HSP 1 Score: 83.6 bits (205), Expect = 6.1e-13
Identity = 44/65 (67.69%), Postives = 52/65 (80.00%), Query Frame = 1

Query: 1  MGRKLDALLGRNRYLKPSKFKALANMAISRTAILKNQHQARCSLAQPDVLQLLNLAFQPR 60
          MGRKLDALLGRN   K SKFKA AN+AISR  +LKNQ QARCS+A+ DV+QLLNL +  R
Sbjct: 1  MGRKLDALLGRN--FKTSKFKATANLAISRVTVLKNQRQARCSIARSDVVQLLNLGYHER 60

Query: 61 SQLRL 66
          + LR+
Sbjct: 61 ALLRV 63

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0L6Y2_CUCSA2.0e-3953.15Uncharacterized protein OS=Cucumis sativus GN=Csa_3G271380 PE=4 SV=1[more]
M1AZM5_SOLTU3.2e-1369.23Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400012974 PE=4 SV=1[more]
K4BXC9_SOLLC4.2e-1367.69Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1[more]
A0A061EIJ4_THECC6.8e-1155.68Regulator of Vps4 activity in the MVB pathway protein, putative OS=Theobroma cac... [more]
A0A0D2TK38_GOSRA6.8e-1163.08Uncharacterized protein OS=Gossypium raimondii GN=B456_007G233300 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT1G13340.12.1e-0858.18 Regulator of Vps4 activity in the MVB pathway protein[more]
Match NameE-valueIdentityDescription
gi|659123287|ref|XP_008461584.1|8.4e-4757.66PREDICTED: uncharacterized protein LOC103500154 [Cucumis melo][more]
gi|778680668|ref|XP_011651369.1|2.9e-3953.15PREDICTED: uncharacterized protein LOC105434874 isoform X1 [Cucumis sativus][more]
gi|778680671|ref|XP_011651370.1|2.0e-1981.54PREDICTED: uncharacterized protein LOC105434874 isoform X2 [Cucumis sativus][more]
gi|565393805|ref|XP_006362561.1|4.7e-1369.23PREDICTED: uncharacterized protein LOC102592415 [Solanum tuberosum][more]
gi|970027309|ref|XP_015074961.1|6.1e-1367.69PREDICTED: uncharacterized protein LOC107018888 [Solanum pennellii][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR005061Ist1
Vocabulary: Biological Process
TermDefinition
GO:0015031protein transport
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0045087 innate immune response
biological_process GO:0031348 negative regulation of defense response
biological_process GO:0015031 protein transport
biological_process GO:0006979 response to oxidative stress
biological_process GO:0009697 salicylic acid biosynthetic process
biological_process GO:0009863 salicylic acid mediated signaling pathway
biological_process GO:0006952 defense response
biological_process GO:0050789 regulation of biological process
biological_process GO:0044763 single-organism cellular process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh01G004070.1CmoCh01G004070.1mRNA


Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005061Vacuolar protein sorting-associated protein Ist1PANTHERPTHR12161UNCHARACTERIZED DUF292coord: 2..64
score: 7.6
NoneNo IPR availablePANTHERPTHR12161:SF16SUBFAMILY NOT NAMEDcoord: 2..64
score: 7.6