CmoCh01G004070 (gene) Cucurbita moschata (Rifu)
The following sequences are available for this feature:
Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below.GCAGCAACCAACAGCAAAACAGTACCTCATTCAAGAGCTTCTCACAGAAAAACAGGCAGCAAAAAAGAATCTTCAATCATGGGAAGGAAACTGGATGCTCTACTGGGAAGGAATAGATATTTGAAGCCTTCCAAGTTCAAGGCCCTTGCTAATATGGCCATTTCTAGGACTGCCATCCTCAAGAATCAGCACCAAGCTCGCTGCTCTCTTGCCCAGCCTGACGTTCTTCAGCTCTTGAACCTTGCTTTCCAACCACGCTCTCAGCTTAGAGTAATTTGTTTCTCTATCTCTATCAGTTCAGCTTCTTTTCTGTCTTCTTATGAGTATAATTTGCATGCTAAGCTTGGATGCATGGGATCCCCTGGTGAAGTGAAGGAGGTGAAGTGAGGGAGGTAGTATCGAGTCTGATCTTTGAGGCTTCAAGGTGCAGAGAGTTTCCAGAACTTCAGGAGATTTGTCGGATTTCAAAGTTGAAATTTGGGATAGTTAATAGCTAAAGCTCACTGCTAGCAAATATTGTCCTCTTTGACCTTTCCCTTTCGACATGGGATCTCACAATCCACCCCCTTCAAAACCTAGCGTCCTCGCTGGCACACCGCTCGGTGCCTAGCTCTGATACCATTTGTAAAAGCCTGTAGTAGCCTAAGCCCACCGCTAAGGTGAGGTTGAAATTAACTGCAAGAACAGAATTAGTTGCCTGCACATATCACTTACTAACCACAACTTCATGTTACAGATGATCCAAAGTTTTCAAGAAGACAGCCCAGCGCAGAAACTAAGCTGAAAGTGCTGAAGGAAATTGCTTTTGAGAACGGCATCACTCTGCATTTAGAAAAAGAACCTACAGTAATCATCAAGGTAAGGAATGTTTCCACTTTTGAAGTATATTTTTAGTAAAATTCATCGGTTAACTGCAGGAAAAGCTAAACCAGAAGCTGGAAGCCAAGAAATCAGCAAACTTGGATAATCCTGAAGTCATAAACACAAGTGACGAATCAGTATCAGAATCAGTGAGAGCAAAGAAGTTTAAAGACGTAGCTAGTGCAGCTCAAGACGCCTTCCAAGCAACAAAAGCTGAAATCGAGTTTTCGAGGTCTCAATCACAGGATATCGATATAGATCATGAAGATGGCTCTTATTTTCACAAAAATGAAAAAGCCTCAAATATGGATAGTTCTCACAAATCCAAGCTTAATGCAGAAGAAGCTAGCATACCTTCCAGTAAGATTGACCATTCAGACGATTTTAGTTTTGAAAATACTCATCTTGTTGAACTTGAAAGCTGCAGTTCAGAATATAAATACATAGAAGATAATCAAGAAGAATCACCAGCTGAACCTGCCAAAGAAAATATGTCATCTGTTCCAAATTTGGATTCAGATATTAGCAATCTCAAGGAGAAATCATCAAATTCAAATTCAATCTTCCACAATGAACCAGGAAATGACAGGTTAATCAGTAAAGAAGAGTTTGCCAGTAAAAATGAAATTTCAGATGAGGATATCAGAGCTCATGCATTGAAGTAA GCAGCAACCAACAGCAAAACAGTACCTCATTCAAGAGCTTCTCACAGAAAAACAGGCAGCAAAAAAGAATCTTCAATCATGGGAAGGAAACTGGATGCTCTACTGGGAAGGAATAGATATTTGAAGCCTTCCAAGTTCAAGGCCCTTGCTAATATGGCCATTTCTAGGACTGCCATCCTCAAGAATCAGCACCAAGCTCGCTGCTCTCTTGCCCAGCCTGACGTTCTTCAGCTCTTGAACCTTGCTTTCCAACCACGCTCTCAGCTTAGACTTGGATGCATGGGATCCCCTGGTGAAGTGAAGGAGGAAAAGCTAAACCAGAAGCTGGAAGCCAAGAAATCAGCAAACTTGGATAATCCTGAAGTCATAAACACAAGTGACGAATCAGTATCAGAATCAGTGAGAGCAAAGAAGTTTAAAGACGTAGCTAGTGCAGCTCAAGACGCCTTCCAAGCAACAAAAGCTGAAATCGAGTTTTCGAGGTCTCAATCACAGGATATCGATATAGATCATGAAGATGGCTCTTATTTTCACAAAAATGAAAAAGCCTCAAATATGGATAGTTCTCACAAATCCAAGCTTAATGCAGAAGAAGCTAGCATACCTTCCAGTAAGATTGACCATTCAGACGATTTTAGTTTTGAAAATACTCATCTTGTTGAACTTGAAAGCTGCAGTTCAGAATATAAATACATAGAAGATAATCAAGAAGAATCACCAGCTGAACCTGCCAAAGAAAATATGTCATCTGTTCCAAATTTGGATTCAGATATTAGCAATCTCAAGGAGAAATCATCAAATTCAAATTCAATCTTCCACAATGAACCAGGAAATGACAGGTTAATCAGTAAAGAAGAGTTTGCCAGTAAAAATGAAATTTCAGATGAGGATATCAGAGCTCATGCATTGAAGTAA ATGGGAAGGAAACTGGATGCTCTACTGGGAAGGAATAGATATTTGAAGCCTTCCAAGTTCAAGGCCCTTGCTAATATGGCCATTTCTAGGACTGCCATCCTCAAGAATCAGCACCAAGCTCGCTGCTCTCTTGCCCAGCCTGACGTTCTTCAGCTCTTGAACCTTGCTTTCCAACCACGCTCTCAGCTTAGACTTGGATGCATGGGATCCCCTGGTGAAGTGAAGGAGGAAAAGCTAAACCAGAAGCTGGAAGCCAAGAAATCAGCAAACTTGGATAATCCTGAAGTCATAAACACAAGTGACGAATCAGTATCAGAATCAGTGAGAGCAAAGAAGTTTAAAGACGTAGCTAGTGCAGCTCAAGACGCCTTCCAAGCAACAAAAGCTGAAATCGAGTTTTCGAGGTCTCAATCACAGGATATCGATATAGATCATGAAGATGGCTCTTATTTTCACAAAAATGAAAAAGCCTCAAATATGGATAGTTCTCACAAATCCAAGCTTAATGCAGAAGAAGCTAGCATACCTTCCAGTAAGATTGACCATTCAGACGATTTTAGTTTTGAAAATACTCATCTTGTTGAACTTGAAAGCTGCAGTTCAGAATATAAATACATAGAAGATAATCAAGAAGAATCACCAGCTGAACCTGCCAAAGAAAATATGTCATCTGTTCCAAATTTGGATTCAGATATTAGCAATCTCAAGGAGAAATCATCAAATTCAAATTCAATCTTCCACAATGAACCAGGAAATGACAGGTTAATCAGTAAAGAAGAGTTTGCCAGTAAAAATGAAATTTCAGATGAGGATATCAGAGCTCATGCATTGAAGTAA
BLAST of CmoCh01G004070 vs. TrEMBL
Match: A0A0A0L6Y2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G271380 PE=4 SV=1) HSP 1 Score: 171.0 bits (432), Expect = 2.0e-39 Identity = 118/222 (53.15%), Postives = 149/222 (67.12%), Query Frame = 1
BLAST of CmoCh01G004070 vs. TrEMBL
Match: M1AZM5_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400012974 PE=4 SV=1) HSP 1 Score: 84.0 bits (206), Expect = 3.2e-13 Identity = 45/65 (69.23%), Postives = 52/65 (80.00%), Query Frame = 1
BLAST of CmoCh01G004070 vs. TrEMBL
Match: K4BXC9_SOLLC (Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1) HSP 1 Score: 83.6 bits (205), Expect = 4.2e-13 Identity = 44/65 (67.69%), Postives = 52/65 (80.00%), Query Frame = 1
BLAST of CmoCh01G004070 vs. TrEMBL
Match: A0A061EIJ4_THECC (Regulator of Vps4 activity in the MVB pathway protein, putative OS=Theobroma cacao GN=TCM_019471 PE=4 SV=1) HSP 1 Score: 76.3 bits (186), Expect = 6.8e-11 Identity = 49/88 (55.68%), Postives = 58/88 (65.91%), Query Frame = 1
BLAST of CmoCh01G004070 vs. TrEMBL
Match: A0A0D2TK38_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G233300 PE=4 SV=1) HSP 1 Score: 76.3 bits (186), Expect = 6.8e-11 Identity = 41/65 (63.08%), Postives = 49/65 (75.38%), Query Frame = 1
BLAST of CmoCh01G004070 vs. TAIR10
Match: AT1G13340.1 (AT1G13340.1 Regulator of Vps4 activity in the MVB pathway protein) HSP 1 Score: 57.0 bits (136), Expect = 2.1e-08 Identity = 32/55 (58.18%), Postives = 41/55 (74.55%), Query Frame = 1
BLAST of CmoCh01G004070 vs. NCBI nr
Match: gi|659123287|ref|XP_008461584.1| (PREDICTED: uncharacterized protein LOC103500154 [Cucumis melo]) HSP 1 Score: 196.1 bits (497), Expect = 8.4e-47 Identity = 128/222 (57.66%), Postives = 159/222 (71.62%), Query Frame = 1
BLAST of CmoCh01G004070 vs. NCBI nr
Match: gi|778680668|ref|XP_011651369.1| (PREDICTED: uncharacterized protein LOC105434874 isoform X1 [Cucumis sativus]) HSP 1 Score: 171.0 bits (432), Expect = 2.9e-39 Identity = 118/222 (53.15%), Postives = 149/222 (67.12%), Query Frame = 1
BLAST of CmoCh01G004070 vs. NCBI nr
Match: gi|778680671|ref|XP_011651370.1| (PREDICTED: uncharacterized protein LOC105434874 isoform X2 [Cucumis sativus]) HSP 1 Score: 105.1 bits (261), Expect = 2.0e-19 Identity = 53/65 (81.54%), Postives = 60/65 (92.31%), Query Frame = 1
BLAST of CmoCh01G004070 vs. NCBI nr
Match: gi|565393805|ref|XP_006362561.1| (PREDICTED: uncharacterized protein LOC102592415 [Solanum tuberosum]) HSP 1 Score: 84.0 bits (206), Expect = 4.7e-13 Identity = 45/65 (69.23%), Postives = 52/65 (80.00%), Query Frame = 1
BLAST of CmoCh01G004070 vs. NCBI nr
Match: gi|970027309|ref|XP_015074961.1| (PREDICTED: uncharacterized protein LOC107018888 [Solanum pennellii]) HSP 1 Score: 83.6 bits (205), Expect = 6.1e-13 Identity = 44/65 (67.69%), Postives = 52/65 (80.00%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene:
The following block(s) are covering this gene:
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