CsaV3_3G020580 (gene) Cucumber (Chinese Long) v3
The following sequences are available for this feature:
Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.AAAGCCGCCTGCTAATACCTCCATAGTCAATTCTGTTTGAACCATTCAAAGCCTGGAAATTTCACTAATCAACGCCTATTTCAAAGTCAATAATGGGAGCCAATTCTCTGACCTGCTTTAAGGAAAAAATAAATAAATTATGCATGTGAATGTTGGTAAAATAGTTAATCATGCATCTTCCCTATAAAACACAGGCAATGTCCGCAACCAACAACCAAAAAGTAGTTCATTCAAGAGCTTTTCACAGGCAAACAAGCAGCAAACAGAATTTAAGGTTTTTCCATCATGGGAAGGAAACTGGATGCTTTACTGGGAAGGAATAGATATTTGAAGGCTTCCAAGTTTAAGACCCTTGCTAATATGGCCATTTCTAGGACTTCCATCCTAAAAAACCACCACCGCGCCCGTTGCTCCCTAGCTCGTGCCGATGTTCTTCAACTGTTGAATCTTAGTTACCAACATCGTGCTCAGCTTAGAGTAAATTTTTTCTCTCTCTCTTTCAGAACTCTATAGTTCAGCCCCTTCTCATTTTTTTCTTTTTTTCCAACCGCTGAGCTTGGATGTGAACGTTAATGAACAGGTTGAGATTGTGATCAAGGAGAATAACATGTTGGATGCTCTTGGAATGATAGAGGATTACTGCTGCCTTCTCGTAGAAAAGGTGGCTCTTCTTCAGATGAACAAGTAGGTCACCTTTCTTTCCTAGAATTTCACTATGTCATTTTTGTCAACTTTGGATGCAGGCCTTTTAAAAGATTTGAAACCTTTTCTGATTCTCTTTCGGCTTAAATGCAGGGAATGCCCTGGCGAAGTTAAGGAGGCGATATCGAGTCTGATATTTGCAGCTTCAAGGTGCGGAGAGTTTCCAGAACTTCAAGAGATTCGTCGGATTTTCGAGTTGAAGTTTGGTGCGGAGTTTGCAAGCAGTGCCATTGATTTACGCAACAACTGTGGTGTTAGTACCAAGGTGAGTTTGATACTTACCAACTGCAAGAAACGAATTAGTTGTTCGAATATATAATCTCCACTTAATAACCACAGTTTCCATATTACAGATGATTCAAAAGTTTTCAACAAAACAGCCCAGTGCCGAAACTAAACTGAAAGTGCTAAAGGAAATTGCTTCAGAAAATGGCATTCCTCTCCATTTAGAGCAAGAATCACCAATAATCATCAAGGTGAGGAAATATCTTTTTTTTTTTTTTAATTATAATGAAAAGAAACATTTCATTCATATGATAGTGAAGAGCCCCAAACATCAAAAAAGGTGATTACATAAGGGAGCGCCAATTGCTAACTAAAAAATATAAGCTTGAATGGAAAGGTGCTTTATTTTAAACTAAGAAAAAGCGATTAGAAGAGGAAAAAGTGTCACCAAAGAGCCGTATGTTCCTCACCTTGATAGAAAATGAGTGCTTCTACTTCCTAAGTTAACTTTTTAGTAAAAAATTCATCTGTTAACTGCAGGCAAAGCAAAACCAAAAGTTGGAAATCAAGAAAGAAGCAGATTTGTATAATCCTGAAGTCACAAACACCACAGATGATCTACATGAAGTTATTACAAGTGAAAAGATGGCATCGGAATTAGTGAAATCAAAGAAGTTTAAAGATGTAGCTAGTGCCACTGAAGAACCCTTCCAATCGGCAGCTTATGCAGCATTAGCAGCTAAAGCTGCAATCAACCTTTCAAAGTCCAAATCACAGGATATTGATTCAGATCATGAAGATGGCTCTCATCTACAAAAGAATGGAAAAGGCTCAGATTTGAATAGTTCTTATGAACCTAAGCTTAATACAAAAGAAGAAAGAATATCTTCCTGTAAGATTGACTATTCAGACGACAGATTTAGTTTTGAAAAGATTTGTCCTGTTGAACTTGAAAGTTGCAGTTCTCAATATGAAGATGCTGACATGGAAGAAACCAATCAAGAAGAGTTACCAAAAGAACCTGCCAAAGAAAGCACATCCTTTGCTCTAAAAGATTCAGATGTTAACAATATGAAGGAGCAATCATCAAAACCAAATTCAATCTTCTACAACGAGTCAGACGGCGACAAGATAACCAATACAGATAATGAAGTTGCCAGTGGAAAAGAAATTTCAGAAGAAGATATAAGAGTTCACGAATCAAAGTAAATTTATTGGCTAGTCACATCTAGATTGGAAGGAAACGTGTAGTGAAACTTTTGGACCCAGT ATGTCATTTTTGTCAACTTTGGATGCAGGCCTTTTAAAAGATTTGAAACCTTTTCTGATTCTCTTTCGGCTTAAATGCAGGGAATGCCCTGGCGAAGTTAAGGAGGCGATATCGAGTCTGATATTTGCAGCTTCAAGGTGCGGAGAGTTTCCAGAACTTCAAGAGATTCGTCGGATTTTCGAGTTGAAGTTTGGTGCGGAGTTTGCAAGCAGTGCCATTGATTTACGCAACAACTGTGGTGTTAGTACCAAGATGATTCAAAAGTTTTCAACAAAACAGCCCAGTGCCGAAACTAAACTGAAAGTGCTAAAGGAAATTGCTTCAGAAAATGGCATTCCTCTCCATTTAGAGCAAGAATCACCAATAATCATCAAGGCAAAGCAAAACCAAAAGTTGGAAATCAAGAAAGAAGCAGATTTGTATAATCCTGAAGTCACAAACACCACAGATGATCTACATGAAGTTATTACAAGTGAAAAGATGGCATCGGAATTAGTGAAATCAAAGAAGTTTAAAGATGTAGCTAGTGCCACTGAAGAACCCTTCCAATCGGCAGCTTATGCAGCATTAGCAGCTAAAGCTGCAATCAACCTTTCAAAGTCCAAATCACAGGATATTGATTCAGATCATGAAGATGGCTCTCATCTACAAAAGAATGGAAAAGGCTCAGATTTGAATAGTTCTTATGAACCTAAGCTTAATACAAAAGAAGAAAGAATATCTTCCTGTAAGATTGACTATTCAGACGACAGATTTAGTTTTGAAAAGATTTGTCCTGTTGAACTTGAAAGTTGCAGTTCTCAATATGAAGATGCTGACATGGAAGAAACCAATCAAGAAGAGTTACCAAAAGAACCTGCCAAAGAAAGCACATCCTTTGCTCTAAAAGATTCAGATGTTAACAATATGAAGGAGCAATCATCAAAACCAAATTCAATCTTCTACAACGAGTCAGACGGCGACAAGATAACCAATACAGATAATGAAGTTGCCAGTGGAAAAGAAATTTCAGAAGAAGATATAAGAGTTCACGAATCAAAGTAA ATGTCATTTTTGTCAACTTTGGATGCAGGCCTTTTAAAAGATTTGAAACCTTTTCTGATTCTCTTTCGGCTTAAATGCAGGGAATGCCCTGGCGAAGTTAAGGAGGCGATATCGAGTCTGATATTTGCAGCTTCAAGGTGCGGAGAGTTTCCAGAACTTCAAGAGATTCGTCGGATTTTCGAGTTGAAGTTTGGTGCGGAGTTTGCAAGCAGTGCCATTGATTTACGCAACAACTGTGGTGTTAGTACCAAGATGATTCAAAAGTTTTCAACAAAACAGCCCAGTGCCGAAACTAAACTGAAAGTGCTAAAGGAAATTGCTTCAGAAAATGGCATTCCTCTCCATTTAGAGCAAGAATCACCAATAATCATCAAGGCAAAGCAAAACCAAAAGTTGGAAATCAAGAAAGAAGCAGATTTGTATAATCCTGAAGTCACAAACACCACAGATGATCTACATGAAGTTATTACAAGTGAAAAGATGGCATCGGAATTAGTGAAATCAAAGAAGTTTAAAGATGTAGCTAGTGCCACTGAAGAACCCTTCCAATCGGCAGCTTATGCAGCATTAGCAGCTAAAGCTGCAATCAACCTTTCAAAGTCCAAATCACAGGATATTGATTCAGATCATGAAGATGGCTCTCATCTACAAAAGAATGGAAAAGGCTCAGATTTGAATAGTTCTTATGAACCTAAGCTTAATACAAAAGAAGAAAGAATATCTTCCTGTAAGATTGACTATTCAGACGACAGATTTAGTTTTGAAAAGATTTGTCCTGTTGAACTTGAAAGTTGCAGTTCTCAATATGAAGATGCTGACATGGAAGAAACCAATCAAGAAGAGTTACCAAAAGAACCTGCCAAAGAAAGCACATCCTTTGCTCTAAAAGATTCAGATGTTAACAATATGAAGGAGCAATCATCAAAACCAAATTCAATCTTCTACAACGAGTCAGACGGCGACAAGATAACCAATACAGATAATGAAGTTGCCAGTGGAAAAGAAATTTCAGAAGAAGATATAAGAGTTCACGAATCAAAGTAA MSFLSTLDAGLLKDLKPFLILFRLKCRECPGEVKEAISSLIFAASRCGEFPELQEIRRIFELKFGAEFASSAIDLRNNCGVSTKMIQKFSTKQPSAETKLKVLKEIASENGIPLHLEQESPIIIKAKQNQKLEIKKEADLYNPEVTNTTDDLHEVITSEKMASELVKSKKFKDVASATEEPFQSAAYAALAAKAAINLSKSKSQDIDSDHEDGSHLQKNGKGSDLNSSYEPKLNTKEERISSCKIDYSDDRFSFEKICPVELESCSSQYEDADMEETNQEELPKEPAKESTSFALKDSDVNNMKEQSSKPNSIFYNESDGDKITNTDNEVASGKEISEEDIRVHESK
BLAST of CsaV3_3G020580 vs. NCBI nr
Match: XP_011651369.1 (PREDICTED: uncharacterized protein LOC105434874 isoform X1 [Cucumis sativus] >KGN57745.1 hypothetical protein Csa_3G271380 [Cucumis sativus]) HSP 1 Score: 604.0 bits (1556), Expect = 3.3e-169 Identity = 320/321 (99.69%), Postives = 321/321 (100.00%), Query Frame = 0
BLAST of CsaV3_3G020580 vs. NCBI nr
Match: XP_008461584.1 (PREDICTED: uncharacterized protein LOC103500154 [Cucumis melo]) HSP 1 Score: 500.7 bits (1288), Expect = 3.9e-138 Identity = 280/347 (80.69%), Postives = 301/347 (86.74%), Query Frame = 0
BLAST of CsaV3_3G020580 vs. NCBI nr
Match: XP_011651370.1 (PREDICTED: uncharacterized protein LOC105434874 isoform X2 [Cucumis sativus]) HSP 1 Score: 357.8 bits (917), Expect = 4.1e-95 Identity = 189/190 (99.47%), Postives = 190/190 (100.00%), Query Frame = 0
BLAST of CsaV3_3G020580 vs. NCBI nr
Match: XP_022983568.1 (uncharacterized protein LOC111482134 [Cucurbita maxima]) HSP 1 Score: 355.9 bits (912), Expect = 1.5e-94 Identity = 214/324 (66.05%), Postives = 245/324 (75.62%), Query Frame = 0
BLAST of CsaV3_3G020580 vs. NCBI nr
Match: XP_022934804.1 (uncharacterized protein LOC111441867 [Cucurbita moschata]) HSP 1 Score: 351.3 bits (900), Expect = 3.8e-93 Identity = 211/324 (65.12%), Postives = 244/324 (75.31%), Query Frame = 0
BLAST of CsaV3_3G020580 vs. TAIR10
Match: AT1G13340.1 (Regulator of Vps4 activity in the MVB pathway protein) HSP 1 Score: 112.8 bits (281), Expect = 4.1e-25 Identity = 54/94 (57.45%), Postives = 71/94 (75.53%), Query Frame = 0
BLAST of CsaV3_3G020580 vs. TAIR10
Match: AT4G35730.1 (Regulator of Vps4 activity in the MVB pathway protein) HSP 1 Score: 94.7 bits (234), Expect = 1.2e-19 Identity = 68/203 (33.50%), Postives = 103/203 (50.74%), Query Frame = 0
BLAST of CsaV3_3G020580 vs. TAIR10
Match: AT1G25420.1 (Regulator of Vps4 activity in the MVB pathway protein) HSP 1 Score: 86.3 bits (212), Expect = 4.1e-17 Identity = 41/83 (49.40%), Postives = 58/83 (69.88%), Query Frame = 0
BLAST of CsaV3_3G020580 vs. TAIR10
Match: AT2G19710.1 (Regulator of Vps4 activity in the MVB pathway protein) HSP 1 Score: 82.8 bits (203), Expect = 4.6e-16 Identity = 36/86 (41.86%), Postives = 60/86 (69.77%), Query Frame = 0
BLAST of CsaV3_3G020580 vs. TAIR10
Match: AT4G29440.1 (Regulator of Vps4 activity in the MVB pathway protein) HSP 1 Score: 77.0 bits (188), Expect = 2.5e-14 Identity = 34/91 (37.36%), Postives = 60/91 (65.93%), Query Frame = 0
BLAST of CsaV3_3G020580 vs. TrEMBL
Match: tr|A0A0A0L6Y2|A0A0A0L6Y2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G271380 PE=4 SV=1) HSP 1 Score: 604.0 bits (1556), Expect = 2.2e-169 Identity = 320/321 (99.69%), Postives = 321/321 (100.00%), Query Frame = 0
BLAST of CsaV3_3G020580 vs. TrEMBL
Match: tr|A0A1S3CEY6|A0A1S3CEY6_CUCME (uncharacterized protein LOC103500154 OS=Cucumis melo OX=3656 GN=LOC103500154 PE=4 SV=1) HSP 1 Score: 500.7 bits (1288), Expect = 2.6e-138 Identity = 280/347 (80.69%), Postives = 301/347 (86.74%), Query Frame = 0
BLAST of CsaV3_3G020580 vs. TrEMBL
Match: tr|A0A061EIJ4|A0A061EIJ4_THECC (Regulator of Vps4 activity in the MVB pathway protein, putative OS=Theobroma cacao OX=3641 GN=TCM_019471 PE=4 SV=1) HSP 1 Score: 183.7 bits (465), Expect = 7.0e-43 Identity = 131/329 (39.82%), Postives = 191/329 (58.05%), Query Frame = 0
BLAST of CsaV3_3G020580 vs. TrEMBL
Match: tr|A0A067F674|A0A067F674_CITSI (Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g010606mg PE=4 SV=1) HSP 1 Score: 171.8 bits (434), Expect = 2.7e-39 Identity = 130/348 (37.36%), Postives = 213/348 (61.21%), Query Frame = 0
BLAST of CsaV3_3G020580 vs. TrEMBL
Match: tr|A0A2H5NUW7|A0A2H5NUW7_CITUN (Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_078300 PE=4 SV=1) HSP 1 Score: 169.1 bits (427), Expect = 1.8e-38 Identity = 132/350 (37.71%), Postives = 214/350 (61.14%), Query Frame = 0
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene:
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