CmaCh20G009610 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh20G009610
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	MADS-box transcription factor family protein
Location	Cma_Chr20 : 4867024 .. 4867863 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGAAATCTCTCGGCCGTCGGAAAATTGAAATCAAAAAGCTTGAGAAGAAGAGTAGCCAGCAGGTAACCTTCTCTAAACGCCGCGCCGGACTTTTCAACAAGGCGGCGGAGCTTTCCGTTCTGTGCGGTGCTGAGATCGCGATCCTCGTCTCCTCTGCCAGCAACAAGCTCTATACATTCGGTCATCCCAATGTTGAGTCGCTCTTGGACCGTTTTCTCGCTGGAAACTCTGCTCCGCCTAAGCCGGCAGAGGCCTACCTCCCTCTGCAGGAGTTGAACCGCGATTTTGACGATGTGGCGGCCGAGTTCGACATCGAGAAGAGGCGCGCGGCAGAGCGCTTGAGTAACGATCGATTTTGGTGGGATGAGCCGCTGGAATCTATGAAAATCGACGAACTGAAGCGATTCCGGTCGTCGTTGGTGGAACTGAGAGGAAAAGTGGCGGAGAGAGTGGAGAAATTTACGGCTATGAGAAAAGAAGGATCTCCGATACCTGCTCTGCAGCCGTCAACTCCTCCGTCGATTACCCTGGTCGGAAACCTCCAACGGCCGCCAACGACTCCATCAATTGACCTCGTCGAAAACGTCCAACGGCCGCCAACGCCTCCATCAATTGGCCTCTTCGAAAATCTCCAATGGCCGTCGACGCCTCCATCAATTGGCCTCTTCGAAAATCTCCGATGGCCGTCGACACCTCCATCAATTGACCTCGTCAAAAGCCTCCAATGGTCACCGATGCCGTCGATTCACCTTGCTGAAAACGACCAATGTCTGCCGTCGTCGTTTCATATCTCTGGAAACCACTCTGTCGCGCGACGACTGAATATGCTGGACTAG

mRNA sequence

ATGAAGAAATCTCTCGGCCGTCGGAAAATTGAAATCAAAAAGCTTGAGAAGAAGAGTAGCCAGCAGGTAACCTTCTCTAAACGCCGCGCCGGACTTTTCAACAAGGCGGCGGAGCTTTCCGTTCTGTGCGGTGCTGAGATCGCGATCCTCGTCTCCTCTGCCAGCAACAAGCTCTATACATTCGGTCATCCCAATGTTGAGTCGCTCTTGGACCGTTTTCTCGCTGGAAACTCTGCTCCGCCTAAGCCGGCAGAGGCCTACCTCCCTCTGCAGGAGTTGAACCGCGATTTTGACGATGTGGCGGCCGAGTTCGACATCGAGAAGAGGCGCGCGGCAGAGCGCTTGAGTAACGATCGATTTTGGTGGGATGAGCCGCTGGAATCTATGAAAATCGACGAACTGAAGCGATTCCGGTCGTCGTTGGTGGAACTGAGAGGAAAAGTGGCGGAGAGAGTGGAGAAATTTACGGCTATGAGAAAAGAAGGATCTCCGATACCTGCTCTGCAGCCGTCAACTCCTCCGTCGATTACCCTGGTCGGAAACCTCCAACGGCCGCCAACGACTCCATCAATTGACCTCGTCGAAAACGTCCAACGGCCGCCAACGCCTCCATCAATTGGCCTCTTCGAAAATCTCCAATGGCCGTCGACGCCTCCATCAATTGGCCTCTTCGAAAATCTCCGATGGCCGTCGACACCTCCATCAATTGACCTCGTCAAAAGCCTCCAATGGTCACCGATGCCGTCGATTCACCTTGCTGAAAACGACCAATGTCTGCCGTCGTCGTTTCATATCTCTGGAAACCACTCTGTCGCGCGACGACTGAATATGCTGGACTAG

Coding sequence (CDS)

ATGAAGAAATCTCTCGGCCGTCGGAAAATTGAAATCAAAAAGCTTGAGAAGAAGAGTAGCCAGCAGGTAACCTTCTCTAAACGCCGCGCCGGACTTTTCAACAAGGCGGCGGAGCTTTCCGTTCTGTGCGGTGCTGAGATCGCGATCCTCGTCTCCTCTGCCAGCAACAAGCTCTATACATTCGGTCATCCCAATGTTGAGTCGCTCTTGGACCGTTTTCTCGCTGGAAACTCTGCTCCGCCTAAGCCGGCAGAGGCCTACCTCCCTCTGCAGGAGTTGAACCGCGATTTTGACGATGTGGCGGCCGAGTTCGACATCGAGAAGAGGCGCGCGGCAGAGCGCTTGAGTAACGATCGATTTTGGTGGGATGAGCCGCTGGAATCTATGAAAATCGACGAACTGAAGCGATTCCGGTCGTCGTTGGTGGAACTGAGAGGAAAAGTGGCGGAGAGAGTGGAGAAATTTACGGCTATGAGAAAAGAAGGATCTCCGATACCTGCTCTGCAGCCGTCAACTCCTCCGTCGATTACCCTGGTCGGAAACCTCCAACGGCCGCCAACGACTCCATCAATTGACCTCGTCGAAAACGTCCAACGGCCGCCAACGCCTCCATCAATTGGCCTCTTCGAAAATCTCCAATGGCCGTCGACGCCTCCATCAATTGGCCTCTTCGAAAATCTCCGATGGCCGTCGACACCTCCATCAATTGACCTCGTCAAAAGCCTCCAATGGTCACCGATGCCGTCGATTCACCTTGCTGAAAACGACCAATGTCTGCCGTCGTCGTTTCATATCTCTGGAAACCACTCTGTCGCGCGACGACTGAATATGCTGGACTAG

Protein sequence

MKKSLGRRKIEIKKLEKKSSQQVTFSKRRAGLFNKAAELSVLCGAEIAILVSSASNKLYTFGHPNVESLLDRFLAGNSAPPKPAEAYLPLQELNRDFDDVAAEFDIEKRRAAERLSNDRFWWDEPLESMKIDELKRFRSSLVELRGKVAERVEKFTAMRKEGSPIPALQPSTPPSITLVGNLQRPPTTPSIDLVENVQRPPTPPSIGLFENLQWPSTPPSIGLFENLRWPSTPPSIDLVKSLQWSPMPSIHLAENDQCLPSSFHISGNHSVARRLNMLD

Homology

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BLAST of CmaCh20G009610 vs. Swiss-Prot
Match: AGL62_ARATH (Agamous-like MADS-box protein AGL62 OS=Arabidopsis thaliana GN=AGL62 PE=1 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 3.7e-26
Identity = 65/169 (38.46%), Postives = 103/169 (60.95%), Query Frame = 1


Query: 1   MKKSLGRRKIEIKKLEKKSSQQVTFSKRRAGLFNKAAELSVLCGAEIAILVSSASNKLYT 60
           +KKS GR+KIE+ K++ +S+ QVTFSKRR+GLF KA+EL  LCGAE+AI+V S   K+++
Sbjct: 2   VKKSKGRQKIEMVKMKNESNLQVTFSKRRSGLFKKASELCTLCGAEVAIVVFSPGRKVFS 61

Query: 61  FGHPNVESLLDRFLAGNSAPP--------KPAEAYLPLQELNRDFDDVAAEFDIEK---- 120
           FGHPNV+S++DRF+  N  PP        +       +Q+LN     V ++ + EK    
Sbjct: 62  FGHPNVDSVIDRFINNNPLPPHQHNNMQLRETRRNSIVQDLNNHLTQVLSQLETEKKKYD 121

Query: 121 --RRAAERLSNDRFWWDEPLESMKIDELKRFRSSLVELRGKVAERVEKF 156
             ++  E+      WW++P+E + + +L+ F+ +L  L+  V     +F
Sbjct: 122 ELKKIREKTKALGNWWEDPVEELALSQLEGFKGNLENLKKVVTVEASRF 170

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BLAST of CmaCh20G009610 vs. Swiss-Prot
Match: AGL61_ARATH (Agamous-like MADS-box protein AGL61 OS=Arabidopsis thaliana GN=AGL61 PE=1 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 1.3e-23
Identity = 68/189 (35.98%), Postives = 112/189 (59.26%), Query Frame = 1


Query: 2   KKSLGRRKIEIKKLEKKSSQQVTFSKRRAGLFNKAAELSVLCGAEIAILVSSASNKLYTF 61
           K+S+GR+KI + K++K+S +QVTFSKRRAGLF KA+EL  LCGAEI I+V S + K ++F
Sbjct: 59  KESIGRQKIPMVKIKKESHRQVTFSKRRAGLFKKASELCTLCGAEIGIIVFSPAKKPFSF 118

Query: 62  GHPNVESLLDRFLAGNSAPPKPAE----AYLPLQELNRDFDDVAAEFDIEKRR--AAERL 121
           GHP+VES+LDR+++ N+     ++    +     ELN     + +E + EK++  A E +
Sbjct: 119 GHPSVESVLDRYVSRNNMSLAQSQQLQGSPAASCELNMQLTHILSEVEEEKKKGQAMEEM 178

Query: 122 SNDRF------WWDEPLESMKIDELKRFRSSLVELRGKVAERVEKFTAMRKEGSPIPALQ 179
             +        WW++P+E M + +L+  + +L ELR  V   +  F   + +       +
Sbjct: 179 RKESVRRSMINWWEKPVEEMNMVQLQEMKYALEELRKTVVTNMASFNEAKDDVFGFLDNK 238

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BLAST of CmaCh20G009610 vs. Swiss-Prot
Match: AGL23_ARATH (Agamous-like MADS-box protein AGL23 OS=Arabidopsis thaliana GN=AGL23 PE=2 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 1.2e-21
Identity = 61/138 (44.20%), Postives = 89/138 (64.49%), Query Frame = 1


Query: 1   MKKSLGRRKIEIKKLEKKSSQQVTFSKRRAGLFNKAAELSVLCGAEIAILVSSASNKLYT 60
           +KK+LGRRK+EI K+ K+S+ QVTFSKR+AGLF KA+E   LC A+IA++V S + K+++
Sbjct: 2   VKKTLGRRKVEIVKMTKESNLQVTFSKRKAGLFKKASEFCTLCDAKIAMIVFSPAGKVFS 61

Query: 61  FGHPNVESLLDRF----LAGNSAPPKPAEAYLPLQELNRDFDDVAAEFDIEKRRAAERLS 120
           FGHPNV+ LLD F    +  N+     +   L +Q LN+ + +V AE + E++    R  
Sbjct: 62  FGHPNVDVLLDHFRGCVVGHNNTNLDESYTKLHVQMLNKSYTEVKAEVEKEQKNKQSRAQ 121

Query: 121 NDR------FWWDE-PLE 128
           N+R       WW + PLE
Sbjct: 122 NERENENAEEWWSKSPLE 139

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BLAST of CmaCh20G009610 vs. Swiss-Prot
Match: AGL28_ARATH (Agamous-like MADS-box protein AGL28 OS=Arabidopsis thaliana GN=AGL28 PE=2 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 1.0e-20
Identity = 64/161 (39.75%), Postives = 90/161 (55.90%), Query Frame = 1


Query: 2   KKSLGRRKIEIKKLEKKSSQQVTFSKRRAGLFNKAAELSVLCGAEIAILVSSASNKLYTF 61
           +K+LGRRKIE+ K+  +S+ QVTFSKRR+GLF K +EL  LC AEIAI+V S S K Y+F
Sbjct: 3   RKNLGRRKIELVKMTNESNLQVTFSKRRSGLFKKGSELCTLCDAEIAIIVFSPSGKAYSF 62

Query: 62  GHPNVESLLD----RFLAGNSAPPKPAEAYLPLQELNRDFDDVAAEFDIEKRRAAERLSN 121
           GHPNV  LLD    R +  N+     +   L +Q LN    +V AE + E+      + N
Sbjct: 63  GHPNVNKLLDHSLGRVIRHNNTNFAESRTKLRIQMLNESLTEVMAEKEKEQETKQSIVQN 122

Query: 122 DR------FWWDEPLESMKIDELKRFRSSLVELRGKVAERV 153
           +R       WW      + + +    +  L  L+ +V E+V
Sbjct: 123 ERENKDAEKWWRNSPTELNLAQSTSMKCDLEALKKEVDEKV 163

[Close]

BLAST of CmaCh20G009610 vs. Swiss-Prot
Match: AGL29_ARATH (Agamous-like MADS-box protein AGL29 OS=Arabidopsis thaliana GN=AGL29 PE=2 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 1.4e-17
Identity = 56/164 (34.15%), Postives = 96/164 (58.54%), Query Frame = 1


Query: 5   LGRRKIEIKKLEKKSSQQVTFSKRRAGLFNKAAELSVLCGAEIAILVSSASNKLYTFGHP 64
           +GRRKI+++ ++  +++QVTFSKRR GLF KA+EL+ LC AE+ I+V S   K +++G P
Sbjct: 1   MGRRKIKMEMVQDMNTRQVTFSKRRTGLFKKASELATLCNAELGIVVFSPGGKPFSYGKP 60

Query: 65  NVESLLDRFLA----GNSAPPKPAEAYLP-LQELNRDFDDVAAEFDIEKRRA------AE 124
           N++S+ +RF+      +S   + +  Y P L+ L+   D +  E + EK R        E
Sbjct: 61  NLDSVAERFMREYDDSDSGDEEKSGNYRPKLKRLSERLDLLNQEVEAEKERGEKSQEKLE 120

Query: 125 RLSNDRFWWDEPLESMKIDELKRFRSSLVELRGKVAERVEKFTA 158
              ++RF   E +E++ +DEL  ++  L  + G++  +V    A
Sbjct: 121 SAGDERF--KESIETLTLDELNEYKDRLQTVHGRIEGQVNHLQA 162

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BLAST of CmaCh20G009610 vs. TrEMBL
Match: A0A0A0LE01_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G860240 PE=4 SV=1)

HSP 1 Score: 226.5 bits (576), Expect = 4.1e-56
Identity = 128/220 (58.18%), Postives = 159/220 (72.27%), Query Frame = 1


Query: 1   MKKSLGRRKIEIKKLEKKSSQQVTFSKRRAGLFNKAAELSVLCGAEIAILVSSASNKLYT 60
           MKK+LGR+KIEIKKLEKKSS+QVTFSKRRAGLF KA ELSVLCGAE+AI+V S ++KL+ 
Sbjct: 9   MKKTLGRQKIEIKKLEKKSSKQVTFSKRRAGLFKKAGELSVLCGAEVAIIVFSPNDKLFC 68

Query: 61  FGHPNVESLLDRFLAGNSAPPKPAEAYLPLQELNRDFDDVAAEFDIEKRRAAERL----- 120
           FGHP+V+ LLDR+L GN +PPKPAE+Y+P+ E NRDF D A EF+ EK+RAAE +     
Sbjct: 69  FGHPDVDVLLDRYLTGNLSPPKPAESYIPVAEFNRDFADCALEFEAEKKRAAELIRAAED 128

Query: 121 --SNDRFWWDEPLESMKIDELKRFRSSLVELRGKVAERVEKFTAMRKEGSPIPAL----Q 180
              N  FWW E +E ++++ELK FRS+L++LR KVAERVEK TA+R  G  +PAL    Q
Sbjct: 129 SRKNGGFWWQEAVEGLRLEELKDFRSALMDLRAKVAERVEKLTAVRIGGPLLPALPPPPQ 188

Query: 181 PSTPPSITLVGNLQRPPTTPSIDLVENVQRPPTPPSIGLF 210
           P T  S  L+GN Q  P   +  L  N QR  T   +G F
Sbjct: 189 PMTSSSFHLIGNHQELPPPTAFHLAGN-QRVAT--GLGFF 225

[Close]

BLAST of CmaCh20G009610 vs. TrEMBL
Match: A0A0A0LLS2_CUCSA (Mads box protein OS=Cucumis sativus GN=Csa_2G277060 PE=4 SV=1)

HSP 1 Score: 224.9 bits (572), Expect = 1.2e-55
Identity = 115/162 (70.99%), Postives = 133/162 (82.10%), Query Frame = 1


Query: 1   MKKSLGRRKIEIKKLEKKSSQQVTFSKRRAGLFNKAAELSVLCGAEIAILVSSASNKLYT 60
           MKKSLGR+KIEIKKL  KS +QVTFSKRRAGLFNKAAELS+L GAEIAILV S+++K+YT
Sbjct: 1   MKKSLGRQKIEIKKLNVKSRRQVTFSKRRAGLFNKAAELSILSGAEIAILVFSSTDKIYT 60

Query: 61  FGHPNVESLLDRFLAGNSAPPKPAEAYLPLQELNRDFDDVAAEFDIEKRRAAERLSNDRF 120
           FGHPNV+ L+DRFL  N  PPKP EAYLPL+ELNRD  DV AEF+ EKRRA        F
Sbjct: 61  FGHPNVDFLIDRFLTSNFVPPKPVEAYLPLEELNRDLKDVTAEFETEKRRAERMRKTGGF 120

Query: 121 WWDEPLESMKIDELKRFRSSLVELRGKVAERVEKFTAMRKEG 163
           WWDE +E M I++LKRFRSSL+ELRGKVAERVE+  A+R +G
Sbjct: 121 WWDEAMECMGIEDLKRFRSSLMELRGKVAERVEELAAVRNQG 162

[Close]

BLAST of CmaCh20G009610 vs. TrEMBL
Match: A0A0A0LW53_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G181400 PE=4 SV=1)

HSP 1 Score: 224.6 bits (571), Expect = 1.5e-55
Identity = 116/166 (69.88%), Postives = 136/166 (81.93%), Query Frame = 1


Query: 1   MKKSLGRRKIEIKKLEKKSSQQVTFSKRRAGLFNKAAELSVLCGAEIAILVSSASNKLYT 60
           MKKS GRRKIEIK+L+K +++QVTFSKRR GLFNKAAELS+LCGAEIAIL+ S+  K+YT
Sbjct: 1   MKKSSGRRKIEIKRLDKNTTRQVTFSKRRVGLFNKAAELSLLCGAEIAILLFSSRGKVYT 60

Query: 61  FGHPNVESLLDRFLAGNSAPPKPAEAYLPLQELNRDFDDVAAEFDIEKRRAAERLSN-DR 120
           FGHPNV++LLDRFL GN  PPKPAEAYLPL ELN D     AEF+IEK+RA ERL N +R
Sbjct: 61  FGHPNVDALLDRFLTGNFLPPKPAEAYLPLPELNLDLCKAEAEFEIEKKRAVERLRNSER 120

Query: 121 FWWDEPLESMKIDELKRFRSSLVELRGKVAERVEKFTAMRKEGSPI 166
           FWWDE LE M++DELK FRSSL++LR  VA R+EK  AMR E  P+
Sbjct: 121 FWWDEALERMRMDELKSFRSSLLQLRANVAGRLEKIRAMRMEDPPV 166

[Close]

BLAST of CmaCh20G009610 vs. TrEMBL
Match: A0A022RIX0_ERYGU (Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a020886mg PE=4 SV=1)

HSP 1 Score: 151.8 bits (382), Expect = 1.3e-33
Identity = 82/157 (52.23%), Postives = 112/157 (71.34%), Query Frame = 1


Query: 2   KKSLGRRKIEIKKLEKKSSQQVTFSKRRAGLFNKAAELSVLCGAEIAILVSSASNKLYTF 61
           KK++GRRKIEIKK+EKKSS QVTFSKRR GLF KA+ELSVLCGAEIAILV S +NK+Y++
Sbjct: 13  KKTMGRRKIEIKKIEKKSSLQVTFSKRRIGLFRKASELSVLCGAEIAILVQSPANKIYSY 72

Query: 62  GHPNVESLLDRFLAGNSAPPKPAEAYLPLQELNRD-FDDVAAEFDIEKR---RAAERLSN 121
           GHP+VE+LLDR+  G       A + +P +E  R  +D+   + +I KR   + +   SN
Sbjct: 73  GHPSVETLLDRYQTGGGG--GAASSIIPYREDGRSKYDEAVKKLEIVKRSMKQESNSSSN 132

Query: 122 DRFWWDEPLESMKIDELKRFRSSLVELRGKVAERVEK 155
            RFWWDEP+E M++ EL+ +  ++  L+  V  RV++
Sbjct: 133 TRFWWDEPMEGMELYELEEYAEAMEALKDNVLRRVDE 167

[Close]

BLAST of CmaCh20G009610 vs. TrEMBL
Match: A0A022RN39_ERYGU (Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a020670mg PE=4 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 3.1e-32
Identity = 79/154 (51.30%), Postives = 108/154 (70.13%), Query Frame = 1


Query: 5   LGRRKIEIKKLEKKSSQQVTFSKRRAGLFNKAAELSVLCGAEIAILVSSASNKLYTFGHP 64
           +GRRKIEIKK+EKKSS QVTFSKRR GLF KA+ELSVLCGAEIAILV S +NK+Y++GHP
Sbjct: 1   MGRRKIEIKKIEKKSSLQVTFSKRRIGLFRKASELSVLCGAEIAILVQSPANKIYSYGHP 60

Query: 65  NVESLLDRFLAGNSAPPKPAEAYLPLQELNRD-FDDVAAEFDIEKRRAAERLS---NDRF 124
           +VE+LLDR+  G       A + +P +E  R  +D+   + +I KR   +  S   + RF
Sbjct: 61  SVETLLDRYQTGGGG--GAASSIIPYREDGRSKYDEAVKKLEIVKRSMKQESSSIISSRF 120

Query: 125 WWDEPLESMKIDELKRFRSSLVELRGKVAERVEK 155
           WWDEP+E M++ EL+ +  ++  L+  V  RV++
Sbjct: 121 WWDEPMEGMELYELEEYAEAMEALKDNVLRRVDE 152

[Close]

BLAST of CmaCh20G009610 vs. TAIR10
Match: AT5G60440.1 (AT5G60440.1 AGAMOUS-like 62)

HSP 1 Score: 120.2 bits (300), Expect = 2.1e-27
Identity = 65/169 (38.46%), Postives = 103/169 (60.95%), Query Frame = 1


Query: 1   MKKSLGRRKIEIKKLEKKSSQQVTFSKRRAGLFNKAAELSVLCGAEIAILVSSASNKLYT 60
           +KKS GR+KIE+ K++ +S+ QVTFSKRR+GLF KA+EL  LCGAE+AI+V S   K+++
Sbjct: 2   VKKSKGRQKIEMVKMKNESNLQVTFSKRRSGLFKKASELCTLCGAEVAIVVFSPGRKVFS 61

Query: 61  FGHPNVESLLDRFLAGNSAPP--------KPAEAYLPLQELNRDFDDVAAEFDIEK---- 120
           FGHPNV+S++DRF+  N  PP        +       +Q+LN     V ++ + EK    
Sbjct: 62  FGHPNVDSVIDRFINNNPLPPHQHNNMQLRETRRNSIVQDLNNHLTQVLSQLETEKKKYD 121

Query: 121 --RRAAERLSNDRFWWDEPLESMKIDELKRFRSSLVELRGKVAERVEKF 156
             ++  E+      WW++P+E + + +L+ F+ +L  L+  V     +F
Sbjct: 122 ELKKIREKTKALGNWWEDPVEELALSQLEGFKGNLENLKKVVTVEASRF 170

[Close]

BLAST of CmaCh20G009610 vs. TAIR10
Match: AT2G24840.1 (AT2G24840.1 AGAMOUS-like 61)

HSP 1 Score: 111.7 bits (278), Expect = 7.4e-25
Identity = 68/189 (35.98%), Postives = 112/189 (59.26%), Query Frame = 1


Query: 2   KKSLGRRKIEIKKLEKKSSQQVTFSKRRAGLFNKAAELSVLCGAEIAILVSSASNKLYTF 61
           K+S+GR+KI + K++K+S +QVTFSKRRAGLF KA+EL  LCGAEI I+V S + K ++F
Sbjct: 59  KESIGRQKIPMVKIKKESHRQVTFSKRRAGLFKKASELCTLCGAEIGIIVFSPAKKPFSF 118

Query: 62  GHPNVESLLDRFLAGNSAPPKPAE----AYLPLQELNRDFDDVAAEFDIEKRR--AAERL 121
           GHP+VES+LDR+++ N+     ++    +     ELN     + +E + EK++  A E +
Sbjct: 119 GHPSVESVLDRYVSRNNMSLAQSQQLQGSPAASCELNMQLTHILSEVEEEKKKGQAMEEM 178

Query: 122 SNDRF------WWDEPLESMKIDELKRFRSSLVELRGKVAERVEKFTAMRKEGSPIPALQ 179
             +        WW++P+E M + +L+  + +L ELR  V   +  F   + +       +
Sbjct: 179 RKESVRRSMINWWEKPVEEMNMVQLQEMKYALEELRKTVVTNMASFNEAKDDVFGFLDNK 238

[Close]

BLAST of CmaCh20G009610 vs. TAIR10
Match: AT1G65360.1 (AT1G65360.1 AGAMOUS-like 23)

HSP 1 Score: 105.1 bits (261), Expect = 6.9e-23
Identity = 61/138 (44.20%), Postives = 89/138 (64.49%), Query Frame = 1


Query: 1   MKKSLGRRKIEIKKLEKKSSQQVTFSKRRAGLFNKAAELSVLCGAEIAILVSSASNKLYT 60
           +KK+LGRRK+EI K+ K+S+ QVTFSKR+AGLF KA+E   LC A+IA++V S + K+++
Sbjct: 2   VKKTLGRRKVEIVKMTKESNLQVTFSKRKAGLFKKASEFCTLCDAKIAMIVFSPAGKVFS 61

Query: 61  FGHPNVESLLDRF----LAGNSAPPKPAEAYLPLQELNRDFDDVAAEFDIEKRRAAERLS 120
           FGHPNV+ LLD F    +  N+     +   L +Q LN+ + +V AE + E++    R  
Sbjct: 62  FGHPNVDVLLDHFRGCVVGHNNTNLDESYTKLHVQMLNKSYTEVKAEVEKEQKNKQSRAQ 121

Query: 121 NDR------FWWDE-PLE 128
           N+R       WW + PLE
Sbjct: 122 NERENENAEEWWSKSPLE 139

[Close]

BLAST of CmaCh20G009610 vs. TAIR10
Match: AT1G01530.1 (AT1G01530.1 AGAMOUS-like 28)

HSP 1 Score: 102.1 bits (253), Expect = 5.8e-22
Identity = 64/161 (39.75%), Postives = 90/161 (55.90%), Query Frame = 1


Query: 2   KKSLGRRKIEIKKLEKKSSQQVTFSKRRAGLFNKAAELSVLCGAEIAILVSSASNKLYTF 61
           +K+LGRRKIE+ K+  +S+ QVTFSKRR+GLF K +EL  LC AEIAI+V S S K Y+F
Sbjct: 3   RKNLGRRKIELVKMTNESNLQVTFSKRRSGLFKKGSELCTLCDAEIAIIVFSPSGKAYSF 62

Query: 62  GHPNVESLLD----RFLAGNSAPPKPAEAYLPLQELNRDFDDVAAEFDIEKRRAAERLSN 121
           GHPNV  LLD    R +  N+     +   L +Q LN    +V AE + E+      + N
Sbjct: 63  GHPNVNKLLDHSLGRVIRHNNTNFAESRTKLRIQMLNESLTEVMAEKEKEQETKQSIVQN 122

Query: 122 DR------FWWDEPLESMKIDELKRFRSSLVELRGKVAERV 153
           +R       WW      + + +    +  L  L+ +V E+V
Sbjct: 123 ERENKDAEKWWRNSPTELNLAQSTSMKCDLEALKKEVDEKV 163

[Close]

BLAST of CmaCh20G009610 vs. TAIR10
Match: AT1G17310.1 (AT1G17310.1 MADS-box transcription factor family protein)

HSP 1 Score: 94.4 bits (233), Expect = 1.2e-19
Identity = 61/151 (40.40%), Postives = 93/151 (61.59%), Query Frame = 1


Query: 2   KKSLGRRKIEIKKLEKKSSQQVTFSKRRAGLFNKAAELSVLCGAEIAILVSSASNKLYTF 61
           K + GR+KIEIKK+E+++ +QVTFSKRR GLF K+AELSVL GA+IA++  S  +++Y F
Sbjct: 44  KTTRGRQKIEIKKIEEETKRQVTFSKRRRGLFKKSAELSVLTGAKIAVITFSKCDRIYRF 103

Query: 62  GHPNVESLLDRFLAGNSAPPKPAEAYLPLQELNRDFDDVAAEFDIEKRRAAERLSNDRFW 121
           GH  V++L+D++L  +   P   E Y           D AA  D E RR          W
Sbjct: 104 GH--VDALIDKYLRKS---PVKLEGY---------SGDNAA--DEESRRP---------W 163

Query: 122 WDEPLESMKIDELKRFRSSLVELRGKVAERV 153
           W+ P+ES+  +EL+ + ++L  LR  + +++
Sbjct: 164 WERPVESVPEEELEEYMAALSMLRENIGKKI 169

[Close]

BLAST of CmaCh20G009610 vs. NCBI nr
Match: gi|659118116|ref|XP_008458954.1| (PREDICTED: agamous-like MADS-box protein AGL62 [Cucumis melo])

HSP 1 Score: 241.9 bits (616), Expect = 1.3e-60
Identity = 135/204 (66.18%), Postives = 151/204 (74.02%), Query Frame = 1


Query: 1   MKKSLGRRKIEIKKLEKKSSQQVTFSKRRAGLFNKAAELSVLCGAEIAILVSSASNKLYT 60
           MKKSLGRRKIEIKKL+KKS+QQVTFSKRRAGLFNKAAELS+LCGAEIA+LV S+  K+YT
Sbjct: 1   MKKSLGRRKIEIKKLDKKSTQQVTFSKRRAGLFNKAAELSILCGAEIAVLVFSSRGKIYT 60

Query: 61  FGHPNVESLLDRFLAG-NSAPPKPAEAYLPLQELNRDFDDVAAEFDIEKRRAAERLSN-D 120
           FGHPNV++LLDRFL G N+ PPKPAEAYLP+ ELNRD     AEF+IEKRRAAER  N +
Sbjct: 61  FGHPNVDALLDRFLTGNNTVPPKPAEAYLPIAELNRDLSKAEAEFEIEKRRAAERSRNSE 120

Query: 121 RFWWDEPLESMKIDELKRFRSSLVELRGKVAERVEKFTAMRKEGSPIPALQPSTPPSITL 180
           RFWWDEPLESMKIDELKRFRSSLVELR  V ER+EK                        
Sbjct: 121 RFWWDEPLESMKIDELKRFRSSLVELRANVVERLEKIE---------------------- 178

Query: 181 VGNLQRPPTTPSIDLVENVQRPPT 203
                R   TPSID+ E++Q P T
Sbjct: 181 ----DRHCVTPSIDIAESIQWPET 178

[Close]

BLAST of CmaCh20G009610 vs. NCBI nr
Match: gi|700204855|gb|KGN59988.1| (hypothetical protein Csa_3G860240 [Cucumis sativus])

HSP 1 Score: 226.5 bits (576), Expect = 5.8e-56
Identity = 128/220 (58.18%), Postives = 159/220 (72.27%), Query Frame = 1


Query: 1   MKKSLGRRKIEIKKLEKKSSQQVTFSKRRAGLFNKAAELSVLCGAEIAILVSSASNKLYT 60
           MKK+LGR+KIEIKKLEKKSS+QVTFSKRRAGLF KA ELSVLCGAE+AI+V S ++KL+ 
Sbjct: 9   MKKTLGRQKIEIKKLEKKSSKQVTFSKRRAGLFKKAGELSVLCGAEVAIIVFSPNDKLFC 68

Query: 61  FGHPNVESLLDRFLAGNSAPPKPAEAYLPLQELNRDFDDVAAEFDIEKRRAAERL----- 120
           FGHP+V+ LLDR+L GN +PPKPAE+Y+P+ E NRDF D A EF+ EK+RAAE +     
Sbjct: 69  FGHPDVDVLLDRYLTGNLSPPKPAESYIPVAEFNRDFADCALEFEAEKKRAAELIRAAED 128

Query: 121 --SNDRFWWDEPLESMKIDELKRFRSSLVELRGKVAERVEKFTAMRKEGSPIPAL----Q 180
              N  FWW E +E ++++ELK FRS+L++LR KVAERVEK TA+R  G  +PAL    Q
Sbjct: 129 SRKNGGFWWQEAVEGLRLEELKDFRSALMDLRAKVAERVEKLTAVRIGGPLLPALPPPPQ 188

Query: 181 PSTPPSITLVGNLQRPPTTPSIDLVENVQRPPTPPSIGLF 210
           P T  S  L+GN Q  P   +  L  N QR  T   +G F
Sbjct: 189 PMTSSSFHLIGNHQELPPPTAFHLAGN-QRVAT--GLGFF 225

[Close]

BLAST of CmaCh20G009610 vs. NCBI nr
Match: gi|778686644|ref|XP_004147877.2| (PREDICTED: agamous-like MADS-box protein AGL62 [Cucumis sativus])

HSP 1 Score: 226.5 bits (576), Expect = 5.8e-56
Identity = 128/220 (58.18%), Postives = 159/220 (72.27%), Query Frame = 1


Query: 1   MKKSLGRRKIEIKKLEKKSSQQVTFSKRRAGLFNKAAELSVLCGAEIAILVSSASNKLYT 60
           MKK+LGR+KIEIKKLEKKSS+QVTFSKRRAGLF KA ELSVLCGAE+AI+V S ++KL+ 
Sbjct: 1   MKKTLGRQKIEIKKLEKKSSKQVTFSKRRAGLFKKAGELSVLCGAEVAIIVFSPNDKLFC 60

Query: 61  FGHPNVESLLDRFLAGNSAPPKPAEAYLPLQELNRDFDDVAAEFDIEKRRAAERL----- 120
           FGHP+V+ LLDR+L GN +PPKPAE+Y+P+ E NRDF D A EF+ EK+RAAE +     
Sbjct: 61  FGHPDVDVLLDRYLTGNLSPPKPAESYIPVAEFNRDFADCALEFEAEKKRAAELIRAAED 120

Query: 121 --SNDRFWWDEPLESMKIDELKRFRSSLVELRGKVAERVEKFTAMRKEGSPIPAL----Q 180
              N  FWW E +E ++++ELK FRS+L++LR KVAERVEK TA+R  G  +PAL    Q
Sbjct: 121 SRKNGGFWWQEAVEGLRLEELKDFRSALMDLRAKVAERVEKLTAVRIGGPLLPALPPPPQ 180

Query: 181 PSTPPSITLVGNLQRPPTTPSIDLVENVQRPPTPPSIGLF 210
           P T  S  L+GN Q  P   +  L  N QR  T   +G F
Sbjct: 181 PMTSSSFHLIGNHQELPPPTAFHLAGN-QRVAT--GLGFF 217

[Close]

BLAST of CmaCh20G009610 vs. NCBI nr
Match: gi|449463992|ref|XP_004149713.1| (PREDICTED: agamous-like MADS-box protein AGL62 [Cucumis sativus])

HSP 1 Score: 224.9 bits (572), Expect = 1.7e-55
Identity = 115/162 (70.99%), Postives = 133/162 (82.10%), Query Frame = 1


Query: 1   MKKSLGRRKIEIKKLEKKSSQQVTFSKRRAGLFNKAAELSVLCGAEIAILVSSASNKLYT 60
           MKKSLGR+KIEIKKL  KS +QVTFSKRRAGLFNKAAELS+L GAEIAILV S+++K+YT
Sbjct: 1   MKKSLGRQKIEIKKLNVKSRRQVTFSKRRAGLFNKAAELSILSGAEIAILVFSSTDKIYT 60

Query: 61  FGHPNVESLLDRFLAGNSAPPKPAEAYLPLQELNRDFDDVAAEFDIEKRRAAERLSNDRF 120
           FGHPNV+ L+DRFL  N  PPKP EAYLPL+ELNRD  DV AEF+ EKRRA        F
Sbjct: 61  FGHPNVDFLIDRFLTSNFVPPKPVEAYLPLEELNRDLKDVTAEFETEKRRAERMRKTGGF 120

Query: 121 WWDEPLESMKIDELKRFRSSLVELRGKVAERVEKFTAMRKEG 163
           WWDE +E M I++LKRFRSSL+ELRGKVAERVE+  A+R +G
Sbjct: 121 WWDEAMECMGIEDLKRFRSSLMELRGKVAERVEELAAVRNQG 162

[Close]

BLAST of CmaCh20G009610 vs. NCBI nr
Match: gi|449443690|ref|XP_004139610.1| (PREDICTED: agamous-like MADS-box protein AGL62 [Cucumis sativus])

HSP 1 Score: 224.6 bits (571), Expect = 2.2e-55
Identity = 116/166 (69.88%), Postives = 136/166 (81.93%), Query Frame = 1


Query: 1   MKKSLGRRKIEIKKLEKKSSQQVTFSKRRAGLFNKAAELSVLCGAEIAILVSSASNKLYT 60
           MKKS GRRKIEIK+L+K +++QVTFSKRR GLFNKAAELS+LCGAEIAIL+ S+  K+YT
Sbjct: 1   MKKSSGRRKIEIKRLDKNTTRQVTFSKRRVGLFNKAAELSLLCGAEIAILLFSSRGKVYT 60

Query: 61  FGHPNVESLLDRFLAGNSAPPKPAEAYLPLQELNRDFDDVAAEFDIEKRRAAERLSN-DR 120
           FGHPNV++LLDRFL GN  PPKPAEAYLPL ELN D     AEF+IEK+RA ERL N +R
Sbjct: 61  FGHPNVDALLDRFLTGNFLPPKPAEAYLPLPELNLDLCKAEAEFEIEKKRAVERLRNSER 120

Query: 121 FWWDEPLESMKIDELKRFRSSLVELRGKVAERVEKFTAMRKEGSPI 166
           FWWDE LE M++DELK FRSSL++LR  VA R+EK  AMR E  P+
Sbjct: 121 FWWDEALERMRMDELKSFRSSLLQLRANVAGRLEKIRAMRMEDPPV 166

The following BLAST results are available for this feature:

BLAST of CmaCh20G009610 vs. Swiss-Prot


Match Name	E-value	Identity	Description
AGL62_ARATH	3.7e-26	38.46	Agamous-like MADS-box protein AGL62 OS=Arabidopsis thaliana GN=AGL62 PE=1 SV=1	[more]
AGL61_ARATH	1.3e-23	35.98	Agamous-like MADS-box protein AGL61 OS=Arabidopsis thaliana GN=AGL61 PE=1 SV=1	[more]
AGL23_ARATH	1.2e-21	44.20	Agamous-like MADS-box protein AGL23 OS=Arabidopsis thaliana GN=AGL23 PE=2 SV=1	[more]
AGL28_ARATH	1.0e-20	39.75	Agamous-like MADS-box protein AGL28 OS=Arabidopsis thaliana GN=AGL28 PE=2 SV=1	[more]
AGL29_ARATH	1.4e-17	34.15	Agamous-like MADS-box protein AGL29 OS=Arabidopsis thaliana GN=AGL29 PE=2 SV=1	[more]

BLAST of CmaCh20G009610 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LE01_CUCSA	4.1e-56	58.18	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G860240 PE=4 SV=1	[more]
A0A0A0LLS2_CUCSA	1.2e-55	70.99	Mads box protein OS=Cucumis sativus GN=Csa_2G277060 PE=4 SV=1	[more]
A0A0A0LW53_CUCSA	1.5e-55	69.88	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G181400 PE=4 SV=1	[more]
A0A022RIX0_ERYGU	1.3e-33	52.23	Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a020886mg PE=4 SV=1	[more]
A0A022RN39_ERYGU	3.1e-32	51.30	Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a020670mg PE=4 SV=1	[more]

BLAST of CmaCh20G009610 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G60440.1	2.1e-27	38.46	AGAMOUS-like 62	[more]
AT2G24840.1	7.4e-25	35.98	AGAMOUS-like 61	[more]
AT1G65360.1	6.9e-23	44.20	AGAMOUS-like 23	[more]
AT1G01530.1	5.8e-22	39.75	AGAMOUS-like 28	[more]
AT1G17310.1	1.2e-19	40.40	MADS-box transcription factor family protein	[more]

BLAST of CmaCh20G009610 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659118116\|ref\|XP_008458954.1\|	1.3e-60	66.18	PREDICTED: agamous-like MADS-box protein AGL62 [Cucumis melo]	[more]
gi\|700204855\|gb\|KGN59988.1\|	5.8e-56	58.18	hypothetical protein Csa_3G860240 [Cucumis sativus]	[more]
gi\|778686644\|ref\|XP_004147877.2\|	5.8e-56	58.18	PREDICTED: agamous-like MADS-box protein AGL62 [Cucumis sativus]	[more]
gi\|449463992\|ref\|XP_004149713.1\|	1.7e-55	70.99	PREDICTED: agamous-like MADS-box protein AGL62 [Cucumis sativus]	[more]
gi\|449443690\|ref\|XP_004139610.1\|	2.2e-55	69.88	PREDICTED: agamous-like MADS-box protein AGL62 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR002100	TF_MADSbox

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding
GO:0046983	protein dimerization activity

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0008150	biological_process
cellular_component	GO:0005634	nucleus
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046983	protein dimerization activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh20G009610.1	CmaCh20G009610.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002100	Transcription factor, MADS-box	PRINTS	PR00404	MADSDOMAIN	coord: 7..27 score: 5.9E-20coord: 42..63 score: 5.9E-20coord: 27..42 score: 5.9
IPR002100	Transcription factor, MADS-box	PFAM	PF00319	SRF-TF	coord: 15..61 score: 2.6
IPR002100	Transcription factor, MADS-box	SMART	SM00432	madsneu2	coord: 5..64 score: 2.5
IPR002100	Transcription factor, MADS-box	PROFILE	PS50066	MADS_BOX_2	coord: 5..65 score: 26
IPR002100	Transcription factor, MADS-box	unknown	SSF55455	SRF-like	coord: 6..75 score: 2.88
None	No IPR available	unknown	Coil	Coil	coord: 90..110 scor
None	No IPR available	PANTHER	PTHR11945	MADS BOX PROTEIN	coord: 6..237 score: 1.8

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh20G009610	Cucsa.367070	Cucumber (Gy14) v1	cgycmaB1016
CmaCh20G009610	Cla020215	Watermelon (97103) v1	cmawmB536
CmaCh20G009610	Csa2G277060	Cucumber (Chinese Long) v2	cmacuB540
CmaCh20G009610	MELO3C020871	Melon (DHL92) v3.5.1	cmameB498
CmaCh20G009610	ClCG02G012490	Watermelon (Charleston Gray)	cmawcgB496
CmaCh20G009610	CSPI02G13880	Wild cucumber (PI 183967)	cmacpiB546
CmaCh20G009610	CmoCh20G009720	Cucurbita moschata (Rifu)	cmacmoB551
CmaCh20G009610	Cp4.1LG16g01560	Cucurbita pepo (Zucchini)	cmacpeB565
CmaCh20G009610	CsaV3_2G016620	Cucumber (Chinese Long) v3	cmacucB0654
CmaCh20G009610	Cla97C02G038180	Watermelon (97103) v2	cmawmbB584
CmaCh20G009610	Bhi10G001721	Wax gourd	cmawgoB0690
CmaCh20G009610	Carg25484	Silver-seed gourd	carcmaB1308

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh20G009610	Cucumber (Chinese Long) v3	cmacucB0653
CmaCh20G009610	Watermelon (97103) v2	cmawmbB571
CmaCh20G009610	Wax gourd	cmawgoB0696
CmaCh20G009610	Cucurbita maxima (Rimu)	cmacmaB469
CmaCh20G009610	Cucumber (Gy14) v1	cgycmaB0116
CmaCh20G009610	Cucurbita moschata (Rifu)	cmacmoB554
CmaCh20G009610	Wild cucumber (PI 183967)	cmacpiB549
CmaCh20G009610	Cucumber (Chinese Long) v2	cmacuB544
CmaCh20G009610	Melon (DHL92) v3.5.1	cmameB493
CmaCh20G009610	Watermelon (Charleston Gray)	cmawcgB484
CmaCh20G009610	Watermelon (97103) v1	cmawmB535
CmaCh20G009610	Cucurbita pepo (Zucchini)	cmacpeB585
CmaCh20G009610	Bottle gourd (USVL1VR-Ls)	cmalsiB507
CmaCh20G009610	Cucumber (Gy14) v2	cgybcmaB220
CmaCh20G009610	Melon (DHL92) v3.6.1	cmamedB573