CSPI02G13880 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI02G13880
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Mads box protein
Location	Chr2 : 13800738 .. 13801487 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTCTTCTTCTTCTTCTTCTTCACAATGAAGAAATCATTGGGCCGTCAAAAGATCGAAATCAAGAAGCTAAATGTGAAGAGTAGACGGCAAGTAACCTTCTCCAAACGCCGTGCTGGGCTCTTCAACAAGGCTGCGGAGCTCTCCATTCTCTCCGGCGCTGAGATTGCTATTCTCGTCTTCTCTTCCACTGACAAAATCTATACATTTGGTCATCCTAATGTTGATTTCCTCATTGATCGTTTCCTGACGTCCAATTTTGTTCCGCCCAAGCCGGTGGAAGCGTACCTCCCTCTGGAGGAGTTGAATCGTGATTTGAAGGATGTGACTGCGGAGTTCGAAACAGAGAAGAGGCGCGCTGAGAGAATGAGGAAAACCGGGGGGTTTTGGTGGGATGAGGCGATGGAATGTATGGGAATCGAGGATTTGAAGCGATTCCGGTCGTCGCTGATGGAACTGAGAGGAAAAGTTGCGGAGAGAGTGGAGGAATTGGCGGCGGTGAGGAATCAAGGGTTTCTTACTACTTCGCCGTCGTTTCATCATCTTTCCGTCGCGACGGAGATTGACGATTTATTTTATTTTAGTTTTTGAATAAGAAAATAGAAAGATTTCAGATTAAGAGTGATTGATTTTAGATCAATTACTTCATTCTAAATATGATTCTAAGAAATTTGTCATTCTTTGTAATTCAAATCGGAGATGATTCAGTTTTGTTAATCCAAAAGGTTCTCTTATTACATGTTTGTTTCATGA

mRNA sequence

ATGAAGAAATCATTGGGCCGTCAAAAGATCGAAATCAAGAAGCTAAATGTGAAGAGTAGACGGCAAGTAACCTTCTCCAAACGCCGTGCTGGGCTCTTCAACAAGGCTGCGGAGCTCTCCATTCTCTCCGGCGCTGAGATTGCTATTCTCGTCTTCTCTTCCACTGACAAAATCTATACATTTGGTCATCCTAATGTTGATTTCCTCATTGATCGTTTCCTGACGTCCAATTTTGTTCCGCCCAAGCCGGTGGAAGCGTACCTCCCTCTGGAGGAGTTGAATCGTGATTTGAAGGATGTGACTGCGGAGTTCGAAACAGAGAAGAGGCGCGCTGAGAGAATGAGGAAAACCGGGGGGTTTTGGTGGGATGAGGCGATGGAATGTATGGGAATCGAGGATTTGAAGCGATTCCGGTCGTCGCTGATGGAACTGAGAGGAAAAGTTGCGGAGAGAGTGGAGGAATTGGCGGCGGTGAGGAATCAAGGGTTTCTTACTACTTCGCCGTCGTTTCATCATCTTTCCGTCGCGACGGAGATTGACGATTTATTTTATTTTAGTTTTTGA

Coding sequence (CDS)

ATGAAGAAATCATTGGGCCGTCAAAAGATCGAAATCAAGAAGCTAAATGTGAAGAGTAGACGGCAAGTAACCTTCTCCAAACGCCGTGCTGGGCTCTTCAACAAGGCTGCGGAGCTCTCCATTCTCTCCGGCGCTGAGATTGCTATTCTCGTCTTCTCTTCCACTGACAAAATCTATACATTTGGTCATCCTAATGTTGATTTCCTCATTGATCGTTTCCTGACGTCCAATTTTGTTCCGCCCAAGCCGGTGGAAGCGTACCTCCCTCTGGAGGAGTTGAATCGTGATTTGAAGGATGTGACTGCGGAGTTCGAAACAGAGAAGAGGCGCGCTGAGAGAATGAGGAAAACCGGGGGGTTTTGGTGGGATGAGGCGATGGAATGTATGGGAATCGAGGATTTGAAGCGATTCCGGTCGTCGCTGATGGAACTGAGAGGAAAAGTTGCGGAGAGAGTGGAGGAATTGGCGGCGGTGAGGAATCAAGGGTTTCTTACTACTTCGCCGTCGTTTCATCATCTTTCCGTCGCGACGGAGATTGACGATTTATTTTATTTTAGTTTTTGA

Homology

[Close]

BLAST of CSPI02G13880 vs. Swiss-Prot
Match: AGL62_ARATH (Agamous-like MADS-box protein AGL62 OS=Arabidopsis thaliana GN=AGL62 PE=1 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 3.8e-27
Identity = 71/183 (38.80%), Postives = 106/183 (57.92%), Query Frame = 1


Query: 1   MKKSLGRQKIEIKKLNVKSRRQVTFSKRRAGLFNKAAELSILSGAEIAILVFSSTDKIYT 60
           +KKS GRQKIE+ K+  +S  QVTFSKRR+GLF KA+EL  L GAE+AI+VFS   K+++
Sbjct: 2   VKKSKGRQKIEMVKMKNESNLQVTFSKRRSGLFKKASELCTLCGAEVAIVVFSPGRKVFS 61

Query: 61  FGHPNVDFLIDRFLTSNFVPP--------KPVEAYLPLEELNRDLKDVTAEFETEKRRAE 120
           FGHPNVD +IDRF+ +N +PP        +       +++LN  L  V ++ ETEK++ +
Sbjct: 62  FGHPNVDSVIDRFINNNPLPPHQHNNMQLRETRRNSIVQDLNNHLTQVLSQLETEKKKYD 121

Query: 121 RMRKTG------GFWWDEAMECMGIEDLKRFRSSLMELRGKVAERVEELAAVRNQGFLTT 170
            ++K        G WW++ +E + +  L+ F+ +L  L+  V              F   
Sbjct: 122 ELKKIREKTKALGNWWEDPVEELALSQLEGFKGNLENLKKVVTVEASRFFQANVPNFYVG 181

[Close]

BLAST of CSPI02G13880 vs. Swiss-Prot
Match: AGL61_ARATH (Agamous-like MADS-box protein AGL61 OS=Arabidopsis thaliana GN=AGL61 PE=1 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 4.8e-22
Identity = 66/174 (37.93%), Postives = 101/174 (58.05%), Query Frame = 1


Query: 2   KKSLGRQKIEIKKLNVKSRRQVTFSKRRAGLFNKAAELSILSGAEIAILVFSSTDKIYTF 61
           K+S+GRQKI + K+  +S RQVTFSKRRAGLF KA+EL  L GAEI I+VFS   K ++F
Sbjct: 59  KESIGRQKIPMVKIKKESHRQVTFSKRRAGLFKKASELCTLCGAEIGIIVFSPAKKPFSF 118

Query: 62  GHPNVDFLIDRFLTSN---FVPPKPVEAYLPLE-ELNRDLKDVTAEFETEKR-------- 121
           GHP+V+ ++DR+++ N       + ++       ELN  L  + +E E EK+        
Sbjct: 119 GHPSVESVLDRYVSRNNMSLAQSQQLQGSPAASCELNMQLTHILSEVEEEKKKGQAMEEM 178

Query: 122 RAERMRKTGGFWWDEAMECMGIEDLKRFRSSLMELRGKVAERVEELAAVRNQGF 164
           R E +R++   WW++ +E M +  L+  + +L ELR  V   +      ++  F
Sbjct: 179 RKESVRRSMINWWEKPVEEMNMVQLQEMKYALEELRKTVVTNMASFNEAKDDVF 232

[Close]

BLAST of CSPI02G13880 vs. Swiss-Prot
Match: AGL28_ARATH (Agamous-like MADS-box protein AGL28 OS=Arabidopsis thaliana GN=AGL28 PE=2 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 4.5e-20
Identity = 70/181 (38.67%), Postives = 98/181 (54.14%), Query Frame = 1


Query: 2   KKSLGRQKIEIKKLNVKSRRQVTFSKRRAGLFNKAAELSILSGAEIAILVFSSTDKIYTF 61
           +K+LGR+KIE+ K+  +S  QVTFSKRR+GLF K +EL  L  AEIAI+VFS + K Y+F
Sbjct: 3   RKNLGRRKIELVKMTNESNLQVTFSKRRSGLFKKGSELCTLCDAEIAIIVFSPSGKAYSF 62

Query: 62  GHPNVDFLIDRFL-------TSNFVPPKPVEAYLPLEELNRDLKDVTAEFETEKR----- 121
           GHPNV+ L+D  L        +NF   +     L ++ LN  L +V AE E E+      
Sbjct: 63  GHPNVNKLLDHSLGRVIRHNNTNFAESR---TKLRIQMLNESLTEVMAEKEKEQETKQSI 122

Query: 122 -RAERMRKTGGFWWDEAMECMGIEDLKRFRSSLMELRGKVAERVEELAAVRNQGFLTTSP 170
            + ER  K    WW  +   + +      +  L  L+ +V E+V +L   RN  F   S 
Sbjct: 123 VQNERENKDAEKWWRNSPTELNLAQSTSMKCDLEALKKEVDEKVAQLHH-RNLNFYVGSS 179

[Close]

BLAST of CSPI02G13880 vs. Swiss-Prot
Match: AGL23_ARATH (Agamous-like MADS-box protein AGL23 OS=Arabidopsis thaliana GN=AGL23 PE=2 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 2.9e-19
Identity = 64/179 (35.75%), Postives = 96/179 (53.63%), Query Frame = 1


Query: 1   MKKSLGRQKIEIKKLNVKSRRQVTFSKRRAGLFNKAAELSILSGAEIAILVFSSTDKIYT 60
           +KK+LGR+K+EI K+  +S  QVTFSKR+AGLF KA+E   L  A+IA++VFS   K+++
Sbjct: 2   VKKTLGRRKVEIVKMTKESNLQVTFSKRKAGLFKKASEFCTLCDAKIAMIVFSPAGKVFS 61

Query: 61  FGHPNVDFLIDRF----LTSNFVPPKPVEAYLPLEELNRDLKDVTAEFETEKR------R 120
           FGHPNVD L+D F    +  N          L ++ LN+   +V AE E E++      +
Sbjct: 62  FGHPNVDVLLDHFRGCVVGHNNTNLDESYTKLHVQMLNKSYTEVKAEVEKEQKNKQSRAQ 121

Query: 121 AERMRKTGGFWWDEAMECMGIEDLKRFRSSLMELRGKVAERVEELAAVRNQGFLTTSPS 170
            ER  +    WW ++   + +         L +L+  V E+  +L    N  F   S S
Sbjct: 122 NERENENAEEWWSKSPLELNLSQSTCMIRVLKDLKKIVDEKAIQLIHQTNPNFYVGSSS 180

[Close]

BLAST of CSPI02G13880 vs. Swiss-Prot
Match: AGL29_ARATH (Agamous-like MADS-box protein AGL29 OS=Arabidopsis thaliana GN=AGL29 PE=2 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 3.0e-16
Identity = 55/162 (33.95%), Postives = 93/162 (57.41%), Query Frame = 1


Query: 5   LGRQKIEIKKLNVKSRRQVTFSKRRAGLFNKAAELSILSGAEIAILVFSSTDKIYTFGHP 64
           +GR+KI+++ +   + RQVTFSKRR GLF KA+EL+ L  AE+ I+VFS   K +++G P
Sbjct: 1   MGRRKIKMEMVQDMNTRQVTFSKRRTGLFKKASELATLCNAELGIVVFSPGGKPFSYGKP 60

Query: 65  NVDFLIDRFL----TSNFVPPKPVEAYLP-LEELNRDLKDVTAEFETEKRRA----ERMR 124
           N+D + +RF+     S+    +    Y P L+ L+  L  +  E E EK R     E++ 
Sbjct: 61  NLDSVAERFMREYDDSDSGDEEKSGNYRPKLKRLSERLDLLNQEVEAEKERGEKSQEKLE 120

Query: 125 KTGGFWWDEAMECMGIEDLKRFRSSLMELRGKVAERVEELAA 158
             G   + E++E + +++L  ++  L  + G++  +V  L A
Sbjct: 121 SAGDERFKESIETLTLDELNEYKDRLQTVHGRIEGQVNHLQA 162

[Close]

BLAST of CSPI02G13880 vs. TrEMBL
Match: A0A0A0LLS2_CUCSA (Mads box protein OS=Cucumis sativus GN=Csa_2G277060 PE=4 SV=1)

HSP 1 Score: 362.8 bits (930), Expect = 2.4e-97
Identity = 186/186 (100.00%), Postives = 186/186 (100.00%), Query Frame = 1


Query: 1   MKKSLGRQKIEIKKLNVKSRRQVTFSKRRAGLFNKAAELSILSGAEIAILVFSSTDKIYT 60
           MKKSLGRQKIEIKKLNVKSRRQVTFSKRRAGLFNKAAELSILSGAEIAILVFSSTDKIYT
Sbjct: 1   MKKSLGRQKIEIKKLNVKSRRQVTFSKRRAGLFNKAAELSILSGAEIAILVFSSTDKIYT 60

Query: 61  FGHPNVDFLIDRFLTSNFVPPKPVEAYLPLEELNRDLKDVTAEFETEKRRAERMRKTGGF 120
           FGHPNVDFLIDRFLTSNFVPPKPVEAYLPLEELNRDLKDVTAEFETEKRRAERMRKTGGF
Sbjct: 61  FGHPNVDFLIDRFLTSNFVPPKPVEAYLPLEELNRDLKDVTAEFETEKRRAERMRKTGGF 120

Query: 121 WWDEAMECMGIEDLKRFRSSLMELRGKVAERVEELAAVRNQGFLTTSPSFHHLSVATEID 180
           WWDEAMECMGIEDLKRFRSSLMELRGKVAERVEELAAVRNQGFLTTSPSFHHLSVATEID
Sbjct: 121 WWDEAMECMGIEDLKRFRSSLMELRGKVAERVEELAAVRNQGFLTTSPSFHHLSVATEID 180

Query: 181 DLFYFS 187
           DLFYFS
Sbjct: 181 DLFYFS 186

[Close]

BLAST of CSPI02G13880 vs. TrEMBL
Match: A0A0A0LE01_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G860240 PE=4 SV=1)

HSP 1 Score: 211.5 bits (537), Expect = 9.1e-52
Identity = 114/188 (60.64%), Postives = 135/188 (71.81%), Query Frame = 1


Query: 1   MKKSLGRQKIEIKKLNVKSRRQVTFSKRRAGLFNKAAELSILSGAEIAILVFSSTDKIYT 60
           MKK+LGRQKIEIKKL  KS +QVTFSKRRAGLF KA ELS+L GAE+AI+VFS  DK++ 
Sbjct: 9   MKKTLGRQKIEIKKLEKKSSKQVTFSKRRAGLFKKAGELSVLCGAEVAIIVFSPNDKLFC 68

Query: 61  FGHPNVDFLIDRFLTSNFVPPKPVEAYLPLEELNRDLKDVTAEFETEKRR-------AER 120
           FGHP+VD L+DR+LT N  PPKP E+Y+P+ E NRD  D   EFE EK+R       AE 
Sbjct: 69  FGHPDVDVLLDRYLTGNLSPPKPAESYIPVAEFNRDFADCALEFEAEKKRAAELIRAAED 128

Query: 121 MRKTGGFWWDEAMECMGIEDLKRFRSSLMELRGKVAERVEELAAVRNQGFL--------- 172
            RK GGFWW EA+E + +E+LK FRS+LM+LR KVAERVE+L AVR  G L         
Sbjct: 129 SRKNGGFWWQEAVEGLRLEELKDFRSALMDLRAKVAERVEKLTAVRIGGPLLPALPPPPQ 188

[Close]

BLAST of CSPI02G13880 vs. TrEMBL
Match: A0A0A0LW53_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G181400 PE=4 SV=1)

HSP 1 Score: 209.5 bits (532), Expect = 3.5e-51
Identity = 109/160 (68.12%), Postives = 131/160 (81.88%), Query Frame = 1


Query: 1   MKKSLGRQKIEIKKLNVKSRRQVTFSKRRAGLFNKAAELSILSGAEIAILVFSSTDKIYT 60
           MKKS GR+KIEIK+L+  + RQVTFSKRR GLFNKAAELS+L GAEIAIL+FSS  K+YT
Sbjct: 1   MKKSSGRRKIEIKRLDKNTTRQVTFSKRRVGLFNKAAELSLLCGAEIAILLFSSRGKVYT 60

Query: 61  FGHPNVDFLIDRFLTSNFVPPKPVEAYLPLEELNRDLKDVTAEFETEKRRA-ERMRKTGG 120
           FGHPNVD L+DRFLT NF+PPKP EAYLPL ELN DL    AEFE EK+RA ER+R +  
Sbjct: 61  FGHPNVDALLDRFLTGNFLPPKPAEAYLPLPELNLDLCKAEAEFEIEKKRAVERLRNSER 120

Query: 121 FWWDEAMECMGIEDLKRFRSSLMELRGKVAERVEELAAVR 160
           FWWDEA+E M +++LK FRSSL++LR  VA R+E++ A+R
Sbjct: 121 FWWDEALERMRMDELKSFRSSLLQLRANVAGRLEKIRAMR 160

[Close]

BLAST of CSPI02G13880 vs. TrEMBL
Match: W9QWE0_9ROSA (Agamous-like MADS-box protein AGL62 OS=Morus notabilis GN=L484_002950 PE=4 SV=1)

HSP 1 Score: 139.0 bits (349), Expect = 5.7e-30
Identity = 84/188 (44.68%), Postives = 114/188 (60.64%), Query Frame = 1


Query: 2   KKSLGRQKIEIKKLNVKSRRQVTFSKRRAGLFNKAAELSILSGAEIAILVFSSTDKIYTF 61
           KK+ GRQ+IEIKKL   S +QVTFSKRR+GLF KAAELS+L G+E+A LVFS  DK++ F
Sbjct: 11  KKTQGRQRIEIKKLENGSNKQVTFSKRRSGLFKKAAELSVLCGSEVAALVFSPNDKLFAF 70

Query: 62  GHPNVDFLIDRFLTSNFVPPKPVEAYLP------LEELNRDLKDVTAEFETEKRR---AE 121
           GHP+VD ++ R+            +          EE NRD  +   E E EK R    +
Sbjct: 71  GHPSVDSVVLRYAHGTNTAAAAAASTSTNVVTHVSEEFNRDFVEAVKELEAEKTRLAEEK 130

Query: 122 RMRKTGG--FWWDEAMECMGIEDLKRFRSSLMELRGKVAERVEELAAVRNQ------GFL 173
           +  K GG  FWWDE +E MG+E+L++  ++L+ELR +VA RV+EL A   +      G +
Sbjct: 131 KKAKIGGEKFWWDEGIEGMGMEELRQHMAALIELRRRVAARVQELKAAPPENATSLAGVV 190

[Close]

BLAST of CSPI02G13880 vs. TrEMBL
Match: W9R6M2_9ROSA (Agamous-like MADS-box protein AGL62 OS=Morus notabilis GN=L484_002953 PE=4 SV=1)

HSP 1 Score: 137.1 bits (344), Expect = 2.2e-29
Identity = 80/168 (47.62%), Postives = 106/168 (63.10%), Query Frame = 1


Query: 2   KKSLGRQKIEIKKLNVKSRRQVTFSKRRAGLFNKAAELSILSGAEIAILVFSSTDKIYTF 61
           KK+ GRQ+IEIKKL   S +QVTFSKRR+GLF KAAELS+L G+E+A LVFS   K++ F
Sbjct: 11  KKTQGRQRIEIKKLENGSNKQVTFSKRRSGLFKKAAELSVLCGSEVAALVFSPNSKLFAF 70

Query: 62  GHPNVDFLIDRFLTSNFVPPKPVEAYLP-------LEELNRDLKDVTAEFETEKRR---A 121
           GHP+VD ++ R+            A           EE NRD  +   E E EK R    
Sbjct: 71  GHPSVDSIVLRYAHGTNTAAAAAAASTSTNVVTNVFEEFNRDYVEAVKELEAEKTRLAEE 130

Query: 122 ERMRKTGG--FWWDEAMECMGIEDLKRFRSSLMELRGKVAERVEELAA 158
           ++  K GG  FWWDE +E MG+E+L++  ++L+ELR +VA RV+EL A
Sbjct: 131 KKKEKIGGEKFWWDEGIEGMGMEELRQHMAALIELRRRVAARVQELKA 178

[Close]

BLAST of CSPI02G13880 vs. TAIR10
Match: AT5G60440.1 (AT5G60440.1 AGAMOUS-like 62)

HSP 1 Score: 122.9 bits (307), Expect = 2.2e-28
Identity = 71/183 (38.80%), Postives = 106/183 (57.92%), Query Frame = 1


Query: 1   MKKSLGRQKIEIKKLNVKSRRQVTFSKRRAGLFNKAAELSILSGAEIAILVFSSTDKIYT 60
           +KKS GRQKIE+ K+  +S  QVTFSKRR+GLF KA+EL  L GAE+AI+VFS   K+++
Sbjct: 2   VKKSKGRQKIEMVKMKNESNLQVTFSKRRSGLFKKASELCTLCGAEVAIVVFSPGRKVFS 61

Query: 61  FGHPNVDFLIDRFLTSNFVPP--------KPVEAYLPLEELNRDLKDVTAEFETEKRRAE 120
           FGHPNVD +IDRF+ +N +PP        +       +++LN  L  V ++ ETEK++ +
Sbjct: 62  FGHPNVDSVIDRFINNNPLPPHQHNNMQLRETRRNSIVQDLNNHLTQVLSQLETEKKKYD 121

Query: 121 RMRKTG------GFWWDEAMECMGIEDLKRFRSSLMELRGKVAERVEELAAVRNQGFLTT 170
            ++K        G WW++ +E + +  L+ F+ +L  L+  V              F   
Sbjct: 122 ELKKIREKTKALGNWWEDPVEELALSQLEGFKGNLENLKKVVTVEASRFFQANVPNFYVG 181

[Close]

BLAST of CSPI02G13880 vs. TAIR10
Match: AT2G24840.1 (AT2G24840.1 AGAMOUS-like 61)

HSP 1 Score: 105.9 bits (263), Expect = 2.7e-23
Identity = 66/174 (37.93%), Postives = 101/174 (58.05%), Query Frame = 1


Query: 2   KKSLGRQKIEIKKLNVKSRRQVTFSKRRAGLFNKAAELSILSGAEIAILVFSSTDKIYTF 61
           K+S+GRQKI + K+  +S RQVTFSKRRAGLF KA+EL  L GAEI I+VFS   K ++F
Sbjct: 59  KESIGRQKIPMVKIKKESHRQVTFSKRRAGLFKKASELCTLCGAEIGIIVFSPAKKPFSF 118

Query: 62  GHPNVDFLIDRFLTSN---FVPPKPVEAYLPLE-ELNRDLKDVTAEFETEKR-------- 121
           GHP+V+ ++DR+++ N       + ++       ELN  L  + +E E EK+        
Sbjct: 119 GHPSVESVLDRYVSRNNMSLAQSQQLQGSPAASCELNMQLTHILSEVEEEKKKGQAMEEM 178

Query: 122 RAERMRKTGGFWWDEAMECMGIEDLKRFRSSLMELRGKVAERVEELAAVRNQGF 164
           R E +R++   WW++ +E M +  L+  + +L ELR  V   +      ++  F
Sbjct: 179 RKESVRRSMINWWEKPVEEMNMVQLQEMKYALEELRKTVVTNMASFNEAKDDVF 232

[Close]

BLAST of CSPI02G13880 vs. TAIR10
Match: AT1G01530.1 (AT1G01530.1 AGAMOUS-like 28)

HSP 1 Score: 99.4 bits (246), Expect = 2.6e-21
Identity = 70/181 (38.67%), Postives = 98/181 (54.14%), Query Frame = 1


Query: 2   KKSLGRQKIEIKKLNVKSRRQVTFSKRRAGLFNKAAELSILSGAEIAILVFSSTDKIYTF 61
           +K+LGR+KIE+ K+  +S  QVTFSKRR+GLF K +EL  L  AEIAI+VFS + K Y+F
Sbjct: 3   RKNLGRRKIELVKMTNESNLQVTFSKRRSGLFKKGSELCTLCDAEIAIIVFSPSGKAYSF 62

Query: 62  GHPNVDFLIDRFL-------TSNFVPPKPVEAYLPLEELNRDLKDVTAEFETEKR----- 121
           GHPNV+ L+D  L        +NF   +     L ++ LN  L +V AE E E+      
Sbjct: 63  GHPNVNKLLDHSLGRVIRHNNTNFAESR---TKLRIQMLNESLTEVMAEKEKEQETKQSI 122

Query: 122 -RAERMRKTGGFWWDEAMECMGIEDLKRFRSSLMELRGKVAERVEELAAVRNQGFLTTSP 170
            + ER  K    WW  +   + +      +  L  L+ +V E+V +L   RN  F   S 
Sbjct: 123 VQNERENKDAEKWWRNSPTELNLAQSTSMKCDLEALKKEVDEKVAQLHH-RNLNFYVGSS 179

[Close]

BLAST of CSPI02G13880 vs. TAIR10
Match: AT1G17310.1 (AT1G17310.1 MADS-box transcription factor family protein)

HSP 1 Score: 98.2 bits (243), Expect = 5.7e-21
Identity = 60/151 (39.74%), Postives = 91/151 (60.26%), Query Frame = 1


Query: 2   KKSLGRQKIEIKKLNVKSRRQVTFSKRRAGLFNKAAELSILSGAEIAILVFSSTDKIYTF 61
           K + GRQKIEIKK+  +++RQVTFSKRR GLF K+AELS+L+GA+IA++ FS  D+IY F
Sbjct: 44  KTTRGRQKIEIKKIEEETKRQVTFSKRRRGLFKKSAELSVLTGAKIAVITFSKCDRIYRF 103

Query: 62  GHPNVDFLIDRFLTSNFVPPKPVEAYLPLEELNRDLKDVTAEFETEKRRAERMRKTGGFW 121
           GH  VD LID++L  +   P  +E Y           D  A+ E+ +            W
Sbjct: 104 GH--VDALIDKYLRKS---PVKLEGY---------SGDNAADEESRRP-----------W 163

Query: 122 WDEAMECMGIEDLKRFRSSLMELRGKVAERV 153
           W+  +E +  E+L+ + ++L  LR  + +++
Sbjct: 164 WERPVESVPEEELEEYMAALSMLRENIGKKI 169

[Close]

BLAST of CSPI02G13880 vs. TAIR10
Match: AT1G65360.1 (AT1G65360.1 AGAMOUS-like 23)

HSP 1 Score: 96.7 bits (239), Expect = 1.7e-20
Identity = 64/179 (35.75%), Postives = 96/179 (53.63%), Query Frame = 1


Query: 1   MKKSLGRQKIEIKKLNVKSRRQVTFSKRRAGLFNKAAELSILSGAEIAILVFSSTDKIYT 60
           +KK+LGR+K+EI K+  +S  QVTFSKR+AGLF KA+E   L  A+IA++VFS   K+++
Sbjct: 2   VKKTLGRRKVEIVKMTKESNLQVTFSKRKAGLFKKASEFCTLCDAKIAMIVFSPAGKVFS 61

Query: 61  FGHPNVDFLIDRF----LTSNFVPPKPVEAYLPLEELNRDLKDVTAEFETEKR------R 120
           FGHPNVD L+D F    +  N          L ++ LN+   +V AE E E++      +
Sbjct: 62  FGHPNVDVLLDHFRGCVVGHNNTNLDESYTKLHVQMLNKSYTEVKAEVEKEQKNKQSRAQ 121

Query: 121 AERMRKTGGFWWDEAMECMGIEDLKRFRSSLMELRGKVAERVEELAAVRNQGFLTTSPS 170
            ER  +    WW ++   + +         L +L+  V E+  +L    N  F   S S
Sbjct: 122 NERENENAEEWWSKSPLELNLSQSTCMIRVLKDLKKIVDEKAIQLIHQTNPNFYVGSSS 180

[Close]

BLAST of CSPI02G13880 vs. NCBI nr
Match: gi|449463992|ref|XP_004149713.1| (PREDICTED: agamous-like MADS-box protein AGL62 [Cucumis sativus])

HSP 1 Score: 362.8 bits (930), Expect = 3.5e-97
Identity = 186/186 (100.00%), Postives = 186/186 (100.00%), Query Frame = 1


Query: 1   MKKSLGRQKIEIKKLNVKSRRQVTFSKRRAGLFNKAAELSILSGAEIAILVFSSTDKIYT 60
           MKKSLGRQKIEIKKLNVKSRRQVTFSKRRAGLFNKAAELSILSGAEIAILVFSSTDKIYT
Sbjct: 1   MKKSLGRQKIEIKKLNVKSRRQVTFSKRRAGLFNKAAELSILSGAEIAILVFSSTDKIYT 60

Query: 61  FGHPNVDFLIDRFLTSNFVPPKPVEAYLPLEELNRDLKDVTAEFETEKRRAERMRKTGGF 120
           FGHPNVDFLIDRFLTSNFVPPKPVEAYLPLEELNRDLKDVTAEFETEKRRAERMRKTGGF
Sbjct: 61  FGHPNVDFLIDRFLTSNFVPPKPVEAYLPLEELNRDLKDVTAEFETEKRRAERMRKTGGF 120

Query: 121 WWDEAMECMGIEDLKRFRSSLMELRGKVAERVEELAAVRNQGFLTTSPSFHHLSVATEID 180
           WWDEAMECMGIEDLKRFRSSLMELRGKVAERVEELAAVRNQGFLTTSPSFHHLSVATEID
Sbjct: 121 WWDEAMECMGIEDLKRFRSSLMELRGKVAERVEELAAVRNQGFLTTSPSFHHLSVATEID 180

Query: 181 DLFYFS 187
           DLFYFS
Sbjct: 181 DLFYFS 186

[Close]

BLAST of CSPI02G13880 vs. NCBI nr
Match: gi|659115872|ref|XP_008457781.1| (PREDICTED: agamous-like MADS-box protein AGL62 [Cucumis melo])

HSP 1 Score: 296.6 bits (758), Expect = 3.1e-77
Identity = 161/183 (87.98%), Postives = 164/183 (89.62%), Query Frame = 1


Query: 1   MKKSLGRQKIEIKKLNVKSRRQVTFSKRRAGLFNKAAELSILSGAEIAILVFSSTDKIYT 60
           MKKS GRQKIEIKKLNVKSRRQVTFSKRRAGLFNKAAELSILSGAEIAILVFSST KIYT
Sbjct: 1   MKKSSGRQKIEIKKLNVKSRRQVTFSKRRAGLFNKAAELSILSGAEIAILVFSSTGKIYT 60

Query: 61  FGHPNVDFLIDRFLTSNFVPPKPVEAYLPLEELNRDLKDVTAEFETEKRRAERMRKTGGF 120
           FGHPNVD LIDRFLTSNFVP KP EAYLPLEELNRDLKD TAEFE EK RAERMR TGGF
Sbjct: 61  FGHPNVDMLIDRFLTSNFVPTKPAEAYLPLEELNRDLKDATAEFEIEKMRAERMRNTGGF 120

Query: 121 WWDEA-MECMGIEDLKRFRSSLMELRGKVAERVEELAAVRNQGFLTTSPSFHHLSVATEI 180
           WWDE  MECMGIE+LKRFRSSLMELRGKVAE+VEELAAV NQ  L TSPSFHH   AT I
Sbjct: 121 WWDETEMECMGIEELKRFRSSLMELRGKVAEKVEELAAV-NQEVLITSPSFHH--HATTI 180

Query: 181 DDL 183
           +DL
Sbjct: 181 EDL 180

[Close]

BLAST of CSPI02G13880 vs. NCBI nr
Match: gi|659118116|ref|XP_008458954.1| (PREDICTED: agamous-like MADS-box protein AGL62 [Cucumis melo])

HSP 1 Score: 215.7 bits (548), Expect = 6.9e-53
Identity = 116/157 (73.89%), Postives = 131/157 (83.44%), Query Frame = 1


Query: 1   MKKSLGRQKIEIKKLNVKSRRQVTFSKRRAGLFNKAAELSILSGAEIAILVFSSTDKIYT 60
           MKKSLGR+KIEIKKL+ KS +QVTFSKRRAGLFNKAAELSIL GAEIA+LVFSS  KIYT
Sbjct: 1   MKKSLGRRKIEIKKLDKKSTQQVTFSKRRAGLFNKAAELSILCGAEIAVLVFSSRGKIYT 60

Query: 61  FGHPNVDFLIDRFLT-SNFVPPKPVEAYLPLEELNRDLKDVTAEFETEKRR-AERMRKTG 120
           FGHPNVD L+DRFLT +N VPPKP EAYLP+ ELNRDL    AEFE EKRR AER R + 
Sbjct: 61  FGHPNVDALLDRFLTGNNTVPPKPAEAYLPIAELNRDLSKAEAEFEIEKRRAAERSRNSE 120

Query: 121 GFWWDEAMECMGIEDLKRFRSSLMELRGKVAERVEEL 156
            FWWDE +E M I++LKRFRSSL+ELR  V ER+E++
Sbjct: 121 RFWWDEPLESMKIDELKRFRSSLVELRANVVERLEKI 157

[Close]

BLAST of CSPI02G13880 vs. NCBI nr
Match: gi|778686644|ref|XP_004147877.2| (PREDICTED: agamous-like MADS-box protein AGL62 [Cucumis sativus])

HSP 1 Score: 211.5 bits (537), Expect = 1.3e-51
Identity = 114/188 (60.64%), Postives = 135/188 (71.81%), Query Frame = 1


Query: 1   MKKSLGRQKIEIKKLNVKSRRQVTFSKRRAGLFNKAAELSILSGAEIAILVFSSTDKIYT 60
           MKK+LGRQKIEIKKL  KS +QVTFSKRRAGLF KA ELS+L GAE+AI+VFS  DK++ 
Sbjct: 1   MKKTLGRQKIEIKKLEKKSSKQVTFSKRRAGLFKKAGELSVLCGAEVAIIVFSPNDKLFC 60

Query: 61  FGHPNVDFLIDRFLTSNFVPPKPVEAYLPLEELNRDLKDVTAEFETEKRR-------AER 120
           FGHP+VD L+DR+LT N  PPKP E+Y+P+ E NRD  D   EFE EK+R       AE 
Sbjct: 61  FGHPDVDVLLDRYLTGNLSPPKPAESYIPVAEFNRDFADCALEFEAEKKRAAELIRAAED 120

Query: 121 MRKTGGFWWDEAMECMGIEDLKRFRSSLMELRGKVAERVEELAAVRNQGFL--------- 172
            RK GGFWW EA+E + +E+LK FRS+LM+LR KVAERVE+L AVR  G L         
Sbjct: 121 SRKNGGFWWQEAVEGLRLEELKDFRSALMDLRAKVAERVEKLTAVRIGGPLLPALPPPPQ 180

[Close]

BLAST of CSPI02G13880 vs. NCBI nr
Match: gi|700204855|gb|KGN59988.1| (hypothetical protein Csa_3G860240 [Cucumis sativus])

HSP 1 Score: 211.5 bits (537), Expect = 1.3e-51
Identity = 114/188 (60.64%), Postives = 135/188 (71.81%), Query Frame = 1


Query: 1   MKKSLGRQKIEIKKLNVKSRRQVTFSKRRAGLFNKAAELSILSGAEIAILVFSSTDKIYT 60
           MKK+LGRQKIEIKKL  KS +QVTFSKRRAGLF KA ELS+L GAE+AI+VFS  DK++ 
Sbjct: 9   MKKTLGRQKIEIKKLEKKSSKQVTFSKRRAGLFKKAGELSVLCGAEVAIIVFSPNDKLFC 68

Query: 61  FGHPNVDFLIDRFLTSNFVPPKPVEAYLPLEELNRDLKDVTAEFETEKRR-------AER 120
           FGHP+VD L+DR+LT N  PPKP E+Y+P+ E NRD  D   EFE EK+R       AE 
Sbjct: 69  FGHPDVDVLLDRYLTGNLSPPKPAESYIPVAEFNRDFADCALEFEAEKKRAAELIRAAED 128

Query: 121 MRKTGGFWWDEAMECMGIEDLKRFRSSLMELRGKVAERVEELAAVRNQGFL--------- 172
            RK GGFWW EA+E + +E+LK FRS+LM+LR KVAERVE+L AVR  G L         
Sbjct: 129 SRKNGGFWWQEAVEGLRLEELKDFRSALMDLRAKVAERVEKLTAVRIGGPLLPALPPPPQ 188

The following BLAST results are available for this feature:

BLAST of CSPI02G13880 vs. Swiss-Prot


Match Name	E-value	Identity	Description
AGL62_ARATH	3.8e-27	38.80	Agamous-like MADS-box protein AGL62 OS=Arabidopsis thaliana GN=AGL62 PE=1 SV=1	[more]
AGL61_ARATH	4.8e-22	37.93	Agamous-like MADS-box protein AGL61 OS=Arabidopsis thaliana GN=AGL61 PE=1 SV=1	[more]
AGL28_ARATH	4.5e-20	38.67	Agamous-like MADS-box protein AGL28 OS=Arabidopsis thaliana GN=AGL28 PE=2 SV=1	[more]
AGL23_ARATH	2.9e-19	35.75	Agamous-like MADS-box protein AGL23 OS=Arabidopsis thaliana GN=AGL23 PE=2 SV=1	[more]
AGL29_ARATH	3.0e-16	33.95	Agamous-like MADS-box protein AGL29 OS=Arabidopsis thaliana GN=AGL29 PE=2 SV=1	[more]

BLAST of CSPI02G13880 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LLS2_CUCSA	2.4e-97	100.00	Mads box protein OS=Cucumis sativus GN=Csa_2G277060 PE=4 SV=1	[more]
A0A0A0LE01_CUCSA	9.1e-52	60.64	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G860240 PE=4 SV=1	[more]
A0A0A0LW53_CUCSA	3.5e-51	68.13	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G181400 PE=4 SV=1	[more]
W9QWE0_9ROSA	5.7e-30	44.68	Agamous-like MADS-box protein AGL62 OS=Morus notabilis GN=L484_002950 PE=4 SV=1	[more]
W9R6M2_9ROSA	2.2e-29	47.62	Agamous-like MADS-box protein AGL62 OS=Morus notabilis GN=L484_002953 PE=4 SV=1	[more]

BLAST of CSPI02G13880 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G60440.1	2.2e-28	38.80	AGAMOUS-like 62	[more]
AT2G24840.1	2.7e-23	37.93	AGAMOUS-like 61	[more]
AT1G01530.1	2.6e-21	38.67	AGAMOUS-like 28	[more]
AT1G17310.1	5.7e-21	39.74	MADS-box transcription factor family protein	[more]
AT1G65360.1	1.7e-20	35.75	AGAMOUS-like 23	[more]

BLAST of CSPI02G13880 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449463992\|ref\|XP_004149713.1\|	3.5e-97	100.00	PREDICTED: agamous-like MADS-box protein AGL62 [Cucumis sativus]	[more]
gi\|659115872\|ref\|XP_008457781.1\|	3.1e-77	87.98	PREDICTED: agamous-like MADS-box protein AGL62 [Cucumis melo]	[more]
gi\|659118116\|ref\|XP_008458954.1\|	6.9e-53	73.89	PREDICTED: agamous-like MADS-box protein AGL62 [Cucumis melo]	[more]
gi\|778686644\|ref\|XP_004147877.2\|	1.3e-51	60.64	PREDICTED: agamous-like MADS-box protein AGL62 [Cucumis sativus]	[more]
gi\|700204855\|gb\|KGN59988.1\|	1.3e-51	60.64	hypothetical protein Csa_3G860240 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR002100	TF_MADSbox

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding
GO:0046983	protein dimerization activity

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046983	protein dimerization activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI02G13880.1	CSPI02G13880.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002100	Transcription factor, MADS-box	PRINTS	PR00404	MADSDOMAIN	coord: 42..63 score: 9.9E-19coord: 27..42 score: 9.9E-19coord: 7..27 score: 9.9
IPR002100	Transcription factor, MADS-box	PFAM	PF00319	SRF-TF	coord: 18..61 score: 1.1
IPR002100	Transcription factor, MADS-box	SMART	SM00432	madsneu2	coord: 5..64 score: 1.4
IPR002100	Transcription factor, MADS-box	PROFILE	PS50066	MADS_BOX_2	coord: 5..65 score: 25
IPR002100	Transcription factor, MADS-box	unknown	SSF55455	SRF-like	coord: 5..77 score: 4.32
None	No IPR available	unknown	Coil	Coil	coord: 90..117 scor
None	No IPR available	PANTHER	PTHR11945	MADS BOX PROTEIN	coord: 6..155 score: 1.4
None	No IPR available	PANTHER	PTHR11945:SF157	SUBFAMILY NOT NAMED	coord: 6..155 score: 1.4

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI02G13880	Cla020215	Watermelon (97103) v1	cpiwmB151
CSPI02G13880	Csa2G277060	Cucumber (Chinese Long) v2	cpicuB065
CSPI02G13880	MELO3C020871	Melon (DHL92) v3.5.1	cpimeB091
CSPI02G13880	ClCG02G012490	Watermelon (Charleston Gray)	cpiwcgB132
CSPI02G13880	Lsi10G005410	Bottle gourd (USVL1VR-Ls)	cpilsiB094
CSPI02G13880	MELO3C020869.2	Melon (DHL92) v3.6.1	cpimedB082
CSPI02G13880	CsaV3_2G016620	Cucumber (Chinese Long) v3	cpicucB085
CSPI02G13880	Cla97C02G038180	Watermelon (97103) v2	cpiwmbB123
CSPI02G13880	Bhi10G001721	Wax gourd	cpiwgoB172
CSPI02G13880	Cucsa.367070	Cucumber (Gy14) v1	cgycpiB541
CSPI02G13880	CmaCh20G009610	Cucurbita maxima (Rimu)	cmacpiB546
CSPI02G13880	CmoCh20G009720	Cucurbita moschata (Rifu)	cmocpiB535
CSPI02G13880	Cp4.1LG16g01560	Cucurbita pepo (Zucchini)	cpecpiB275

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI02G13880	Watermelon (Charleston Gray)	cpiwcgB119
CSPI02G13880	Watermelon (Charleston Gray)	cpiwcgB125
CSPI02G13880	Watermelon (97103) v1	cpiwmB142
CSPI02G13880	Cucurbita pepo (Zucchini)	cpecpiB274
CSPI02G13880	Cucurbita pepo (Zucchini)	cpecpiB480
CSPI02G13880	Bottle gourd (USVL1VR-Ls)	cpilsiB091
CSPI02G13880	Bottle gourd (USVL1VR-Ls)	cpilsiB109
CSPI02G13880	Cucumber (Gy14) v2	cgybcpiB056
CSPI02G13880	Cucumber (Gy14) v2	cgybcpiB063
CSPI02G13880	Cucumber (Chinese Long) v3	cpicucB080
CSPI02G13880	Cucumber (Chinese Long) v3	cpicucB109
CSPI02G13880	Watermelon (97103) v2	cpiwmbB098
CSPI02G13880	Watermelon (97103) v2	cpiwmbB117
CSPI02G13880	Wax gourd	cpiwgoB181
CSPI02G13880	Wild cucumber (PI 183967)	cpicpiB081
CSPI02G13880	Cucumber (Gy14) v1	cgycpiB114
CSPI02G13880	Cucurbita maxima (Rimu)	cmacpiB869
CSPI02G13880	Cucurbita maxima (Rimu)	cmacpiB870
CSPI02G13880	Cucurbita moschata (Rifu)	cmocpiB849
CSPI02G13880	Cucumber (Chinese Long) v2	cpicuB087