CmaCh20G000770 (gene) Cucurbita maxima (Rimu)
The following sequences are available for this feature:
Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGGGAGGAGCGCAGAGATTGGGTCAAAAAACAGATGCTCCAACTTCAGGAGCAATGTATGAGCTTCCAGGCTCTATCTGTTGAACTTGCAGTAAGACATTTTTCTATATACTGAGATAGAGTTGAGTATAGGCCGTAATAATGCGGGGAATCAAACAAAATATTTCTTATGAGGGTGTAGAAACCTCTCCCTAATAAATGCGTTTTAAAAACAGTAAAGCTGACGCTATATGTAATAGGCCAAAATAGATAATTTGTGTTAGCGGTGGGCTTTTGCCTTGTTTTCTAGTTCCATGCTCTGTAACTCATGTGTTGTTACATCTGATGGTATCAGTCTTGATTTGTATATAGGTGTGTGATATGCGAAATGGAATACAAATGTGGAGACCAAAGGATTACTCTACCATGCAAACATAAGTATCATACCAGTTGCAGGACCAAGTGGCTTAGTATGAACAAGGTGATGTTCTGATATATTTTATCCTTGCACTTTTGGGGGTAATTCTAGTAACAGACTATCAGTAACTTTTGTCTATACAGTACTTAATATTTCTGTTCCAGGCATGCCCCATTTGCTACACTGAGGTTTTTGGTGACACTTCAAAACCATATATTACTAGAGAATAG ATGGGAGGAGCGCAGAGATTGGGTCAAAAAACAGATGCTCCAACTTCAGGAGCAATGTGTGTGATATGCGAAATGGAATACAAATGTGGAGACCAAAGGATTACTCTACCATGCAAACATAAGTATCATACCAGTTGCAGGACCAAGTGGCTTAGTATGAACAAGGCATGCCCCATTTGCTACACTGAGGTTTTTGGTGACACTTCAAAACCATATATTACTAGAGAATAG ATGGGAGGAGCGCAGAGATTGGGTCAAAAAACAGATGCTCCAACTTCAGGAGCAATGTGTGTGATATGCGAAATGGAATACAAATGTGGAGACCAAAGGATTACTCTACCATGCAAACATAAGTATCATACCAGTTGCAGGACCAAGTGGCTTAGTATGAACAAGGCATGCCCCATTTGCTACACTGAGGTTTTTGGTGACACTTCAAAACCATATATTACTAGAGAATAG MGGAQRLGQKTDAPTSGAMCVICEMEYKCGDQRITLPCKHKYHTSCRTKWLSMNKACPICYTEVFGDTSKPYITRE
BLAST of CmaCh20G000770 vs. Swiss-Prot
Match: BB_ARATH (E3 ubiquitin ligase BIG BROTHER OS=Arabidopsis thaliana GN=BB PE=1 SV=1) HSP 1 Score: 83.2 bits (204), Expect = 1.4e-15 Identity = 30/54 (55.56%), Postives = 44/54 (81.48%), Query Frame = 1
BLAST of CmaCh20G000770 vs. Swiss-Prot
Match: BBR_ARATH (E3 ubiquitin ligase BIG BROTHER-related OS=Arabidopsis thaliana GN=BBR PE=2 SV=1) HSP 1 Score: 67.0 bits (162), Expect = 1.0e-10 Identity = 25/50 (50.00%), Postives = 32/50 (64.00%), Query Frame = 1
BLAST of CmaCh20G000770 vs. Swiss-Prot
Match: YDM9_SCHPO (Uncharacterized RING finger protein C57A7.09 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC57A7.09 PE=1 SV=1) HSP 1 Score: 58.5 bits (140), Expect = 3.6e-08 Identity = 25/59 (42.37%), Postives = 33/59 (55.93%), Query Frame = 1
BLAST of CmaCh20G000770 vs. Swiss-Prot
Match: RMR2_ORYSJ (Receptor homology region, transmembrane domain- and RING domain-containing protein 2 OS=Oryza sativa subsp. japonica GN=RMR1 PE=2 SV=2) HSP 1 Score: 56.2 bits (134), Expect = 1.8e-07 Identity = 22/58 (37.93%), Postives = 34/58 (58.62%), Query Frame = 1
BLAST of CmaCh20G000770 vs. Swiss-Prot
Match: RNF6_HUMAN (E3 ubiquitin-protein ligase RNF6 OS=Homo sapiens GN=RNF6 PE=1 SV=1) HSP 1 Score: 55.1 bits (131), Expect = 4.0e-07 Identity = 21/50 (42.00%), Postives = 29/50 (58.00%), Query Frame = 1
BLAST of CmaCh20G000770 vs. TrEMBL
Match: A0A0A0LX98_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G613470 PE=4 SV=1) HSP 1 Score: 104.8 bits (260), Expect = 4.9e-20 Identity = 44/54 (81.48%), Postives = 47/54 (87.04%), Query Frame = 1
BLAST of CmaCh20G000770 vs. TrEMBL
Match: A0A0A0L1Z5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G290860 PE=4 SV=1) HSP 1 Score: 104.4 bits (259), Expect = 6.3e-20 Identity = 44/51 (86.27%), Postives = 47/51 (92.16%), Query Frame = 1
BLAST of CmaCh20G000770 vs. TrEMBL
Match: A0A061GTY3_THECC (RING/U-box superfamily protein isoform 1 OS=Theobroma cacao GN=TCM_040623 PE=4 SV=1) HSP 1 Score: 100.5 bits (249), Expect = 9.2e-19 Identity = 40/52 (76.92%), Postives = 46/52 (88.46%), Query Frame = 1
BLAST of CmaCh20G000770 vs. TrEMBL
Match: I3SID4_LOTJA (Uncharacterized protein OS=Lotus japonicus PE=2 SV=1) HSP 1 Score: 100.5 bits (249), Expect = 9.2e-19 Identity = 41/52 (78.85%), Postives = 45/52 (86.54%), Query Frame = 1
BLAST of CmaCh20G000770 vs. TrEMBL
Match: A0A067F1T9_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g025212mg PE=4 SV=1) HSP 1 Score: 99.8 bits (247), Expect = 1.6e-18 Identity = 40/51 (78.43%), Postives = 46/51 (90.20%), Query Frame = 1
BLAST of CmaCh20G000770 vs. TAIR10
Match: AT3G63530.1 (AT3G63530.1 RING/U-box superfamily protein) HSP 1 Score: 83.2 bits (204), Expect = 7.7e-17 Identity = 30/54 (55.56%), Postives = 44/54 (81.48%), Query Frame = 1
BLAST of CmaCh20G000770 vs. TAIR10
Match: AT3G19910.1 (AT3G19910.1 RING/U-box superfamily protein) HSP 1 Score: 67.0 bits (162), Expect = 5.7e-12 Identity = 25/50 (50.00%), Postives = 32/50 (64.00%), Query Frame = 1
BLAST of CmaCh20G000770 vs. TAIR10
Match: AT5G52140.1 (AT5G52140.1 RING/U-box superfamily protein) HSP 1 Score: 63.9 bits (154), Expect = 4.8e-11 Identity = 26/48 (54.17%), Postives = 31/48 (64.58%), Query Frame = 1
BLAST of CmaCh20G000770 vs. TAIR10
Match: AT5G24870.1 (AT5G24870.1 RING/U-box superfamily protein) HSP 1 Score: 62.0 bits (149), Expect = 1.8e-10 Identity = 25/43 (58.14%), Postives = 29/43 (67.44%), Query Frame = 1
BLAST of CmaCh20G000770 vs. TAIR10
Match: AT5G10650.1 (AT5G10650.1 RING/U-box superfamily protein) HSP 1 Score: 59.7 bits (143), Expect = 9.1e-10 Identity = 28/65 (43.08%), Postives = 37/65 (56.92%), Query Frame = 1
BLAST of CmaCh20G000770 vs. NCBI nr
Match: gi|778663625|ref|XP_011660125.1| (PREDICTED: E3 ubiquitin ligase BIG BROTHER [Cucumis sativus]) HSP 1 Score: 104.8 bits (260), Expect = 7.0e-20 Identity = 44/54 (81.48%), Postives = 47/54 (87.04%), Query Frame = 1
BLAST of CmaCh20G000770 vs. NCBI nr
Match: gi|449448944|ref|XP_004142225.1| (PREDICTED: E3 ubiquitin ligase BIG BROTHER isoform X1 [Cucumis sativus]) HSP 1 Score: 104.4 bits (259), Expect = 9.1e-20 Identity = 44/51 (86.27%), Postives = 47/51 (92.16%), Query Frame = 1
BLAST of CmaCh20G000770 vs. NCBI nr
Match: gi|778693179|ref|XP_011653591.1| (PREDICTED: E3 ubiquitin ligase BIG BROTHER isoform X2 [Cucumis sativus]) HSP 1 Score: 104.4 bits (259), Expect = 9.1e-20 Identity = 44/51 (86.27%), Postives = 47/51 (92.16%), Query Frame = 1
BLAST of CmaCh20G000770 vs. NCBI nr
Match: gi|659099125|ref|XP_008450441.1| (PREDICTED: E3 ubiquitin ligase BIG BROTHER-like [Cucumis melo]) HSP 1 Score: 104.4 bits (259), Expect = 9.1e-20 Identity = 44/54 (81.48%), Postives = 47/54 (87.04%), Query Frame = 1
BLAST of CmaCh20G000770 vs. NCBI nr
Match: gi|700199013|gb|KGN54171.1| (hypothetical protein Csa_4G290860 [Cucumis sativus]) HSP 1 Score: 104.4 bits (259), Expect = 9.1e-20 Identity = 44/51 (86.27%), Postives = 47/51 (92.16%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
The following gene(s) are orthologous to this gene: The following gene(s) are paralogous to this gene:
The following block(s) are covering this gene:
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