CmaCh19G004080 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh19G004080
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Heavy metal-associated domain protein, putative
Location	Cma_Chr19 : 4907360 .. 4908799 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTCCCTTACGCTCACCCTTTTTTTTTTTTTTTATATAAACCTTTTTCTCTCTTCATTCTCTTTCACCTTTCACTTTTTGCTCATCACCCAAATGGCTCAGGTTTCTCCTCTTCCTTTTCTCTCTGATTACTCTTTCTTTTTTCTTATTAGATTTCTGTTTTCTCTTCGATCTCTTGCAGAAAGTTGTGCTGAAGGTGATGACCATGACTGACGACAAGACGAAGCAGAAGGCAATCGAAGCTGCTGCCGACATCTACGGTTCGTCTCCGATTCTCTGTTTTTTTTGTTCAAATCTTTCTTCCGAGTTTTCGATCTTTAAGTGTGGAAAATCGATCCGACTCTGTTTGTTTGCTTTTTCTGTTGTCTGAAAAGAATCGGAAGCTGAAAAACTATATGAAATCATTTGGAATCGGAAATTGAAAAACGATATGAAATCATTTGGAATCGTAAAATGAAAAACGATATGGAATCATTTGGAATTGGAAATTGAAAAACGATATGAAATCATTTGGAATCGTAAACTGAAAAACGATATGGAATCATTTGGAATTGGAAATTGAAAAACGATATGAAATCATTTGGAATCGTAAACTGAAAAACGATATGGAATCATTTGGATGATTAGGTGTTGATTCGATCGCGGCGGATCTGAAGGATCAGAAACTGACGGTGATAGGATCGATGGACGCGGTGGCGATTGTGAAGAAATTGAAGAAAGTAGGTAAAGTGGACTTGATATCAGTCGGACCTGCAAAGGAAGAGAAGAAAGAGGAGAAGAAAGAGGAGAAGAAGGAAGAGAAAAAAGAGGAGAAAAAAGAGGAGAAAAAGGAAGAGAAAAAGGAAGAAAAAAAGTGAAAAAAGTACAATTCCTTCCCCCTTCTTTCAATTTTGATTTTCCATACATTTAACGAATTTTAATTCAAATAAGTTCTTCTCAATTCATATCAAAATTACATGAAGAACAAACCTCTGTACCTACTTAATTTTTGTTTTCATAAGCCCTTTCAAATTCATGCTCTGATTCACCCATAATGCTGCCATTTGCATTTCCAACATACGAACACAACAGACAATTTTCCCTAATTGGTATCTAAAATTTATGTAACAGATGGACATATTTTGTATTTTCATGTTTAGTGGGACCTACAAAGTTTGTTCCGTTATTTCTTGATTTTCGCAATTTAAACATAATTTTATGGTTAGATAAGAATTTGGAAATGGGATATAATTTTGGTGGTGGTGGTTGAGCGGGGCATGGGAAAATGTTTAGAGCTATATGGCCAACAATGGTGGCGTACATAATTTTTCATAATTCTTCTTTTGAAGTTTTTGGCTCTTGATTTGTACTCATTCATTCCCGTGTGTTTTCACTTTATTTCTCTCTTAAAGTCTTATTTTACGGCGAGGAATGAAGTTGTTGAAGTTGGAATTGATATCCTC

mRNA sequence

TTCCCTTACGCTCACCCTTTTTTTTTTTTTTTATATAAACCTTTTTCTCTCTTCATTCTCTTTCACCTTTCACTTTTTGCTCATCACCCAAATGGCTCAGAAAGTTGTGCTGAAGGTGATGACCATGACTGACGACAAGACGAAGCAGAAGGCAATCGAAGCTGCTGCCGACATCTACGGTGTTGATTCGATCGCGGCGGATCTGAAGGATCAGAAACTGACGGTGATAGGATCGATGGACGCGGTGGCGATTGTGAAGAAATTGAAGAAAGTAGGTAAAGTGGACTTGATATCAGTCGGACCTGCAAAGGAAGAGAAGAAAGAGGAGAAGAAAGAGGAGAAGAAGGAAGAGAAAAAAGAGGAGAAAAAAGAGGAGAAAAAGGAAGAGAAAAAGGAAGAAAAAAAGTGAAAAAAGTACAATTCCTTCCCCCTTCTTTCAATTTTGATTTTCCATACATTTAACGAATTTTAATTCAAATAAGTTCTTCTCAATTCATATCAAAATTACATGAAGAACAAACCTCTGTACCTACTTAATTTTTGTTTTCATAAGCCCTTTCAAATTCATGCTCTGATTCACCCATAATGCTGCCATTTGCATTTCCAACATACGAACACAACAGACAATTTTCCCTAATTGGTATCTAAAATTTATGTAACAGATGGACATATTTTGTATTTTCATGTTTAGTGGGACCTACAAAGTTTGTTCCGTTATTTCTTGATTTTCGCAATTTAAACATAATTTTATGGTTAGATAAGAATTTGGAAATGGGATATAATTTTGGTGGTGGTGGTTGAGCGGGGCATGGGAAAATGTTTAGAGCTATATGGCCAACAATGGTGGCGTACATAATTTTTCATAATTCTTCTTTTGAAGTTTTTGGCTCTTGATTTGTACTCATTCATTCCCGTGTGTTTTCACTTTATTTCTCTCTTAAAGTCTTATTTTACGGCGAGGAATGAAGTTGTTGAAGTTGGAATTGATATCCTC

Coding sequence (CDS)

ATGGCTCAGAAAGTTGTGCTGAAGGTGATGACCATGACTGACGACAAGACGAAGCAGAAGGCAATCGAAGCTGCTGCCGACATCTACGGTGTTGATTCGATCGCGGCGGATCTGAAGGATCAGAAACTGACGGTGATAGGATCGATGGACGCGGTGGCGATTGTGAAGAAATTGAAGAAAGTAGGTAAAGTGGACTTGATATCAGTCGGACCTGCAAAGGAAGAGAAGAAAGAGGAGAAGAAAGAGGAGAAGAAGGAAGAGAAAAAAGAGGAGAAAAAAGAGGAGAAAAAGGAAGAGAAAAAGGAAGAAAAAAAGTGA

Protein sequence

MAQKVVLKVMTMTDDKTKQKAIEAAADIYGVDSIAADLKDQKLTVIGSMDAVAIVKKLKKVGKVDLISVGPAKEEKKEEKKEEKKEEKKEEKKEEKKEEKKEEKK

Homology

[Close]

BLAST of CmaCh19G004080 vs. TrEMBL
Match: A0A061G0W6_THECC (Copper transport protein family OS=Theobroma cacao GN=TCM_015168 PE=4 SV=1)

HSP 1 Score: 148.3 bits (373), Expect = 5.3e-33
Identity = 99/105 (94.29%), Postives = 103/105 (98.10%), Query Frame = 1


Query: 1   MAQKVVLKVMTMTDDKTKQKAIEAAADIYGVDSIAADLKDQKLTVIGSMDAVAIVKKLKK 60
           MAQKVVLKV+TMTD KTKQKAIEAAADIYGVDSIAADLKDQKLTV+G MDAVA+VKKLKK
Sbjct: 55  MAQKVVLKVLTMTDVKTKQKAIEAAADIYGVDSIAADLKDQKLTVVGQMDAVAVVKKLKK 114

Query: 61  VGKVDLISVGPAKEEKKEEKKEEKKEEKKEEKKEEKKEEKKEEKK 106
           VGKVD+ISVGPAKEEKKEEKKEEKKEEKKEEKKEEKKEEKKEEKK
Sbjct: 115 VGKVDIISVGPAKEEKKEEKKEEKKEEKKEEKKEEKKEEKKEEKK 159

[Close]

BLAST of CmaCh19G004080 vs. TrEMBL
Match: W9QN89_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_001022 PE=4 SV=1)

HSP 1 Score: 147.5 bits (371), Expect = 9.0e-33
Identity = 97/105 (92.38%), Postives = 103/105 (98.10%), Query Frame = 1


Query: 1   MAQKVVLKVMTMTDDKTKQKAIEAAADIYGVDSIAADLKDQKLTVIGSMDAVAIVKKLKK 60
           MAQKVVLKVMTMTDDKTKQKA+EAAADIYGVDSIAAD+KDQKLTVIG MD VA+VKKLK+
Sbjct: 1   MAQKVVLKVMTMTDDKTKQKAMEAAADIYGVDSIAADIKDQKLTVIGQMDTVAVVKKLKR 60

Query: 61  VGKVDLISVGPAKEEKKEEKKEEKKEEKKEEKKEEKKEEKKEEKK 106
           VGKVD+ISVGPAKEEKKEEKKE+KKEEKKEEKKEEKKEEKKEEKK
Sbjct: 61  VGKVDIISVGPAKEEKKEEKKEDKKEEKKEEKKEEKKEEKKEEKK 105

[Close]

BLAST of CmaCh19G004080 vs. TrEMBL
Match: A0A072UAJ9_MEDTR (Heavy metal-associated domain protein, putative OS=Medicago truncatula GN=MTR_6g045257 PE=4 SV=1)

HSP 1 Score: 146.0 bits (367), Expect = 2.6e-32
Identity = 97/105 (92.38%), Postives = 102/105 (97.14%), Query Frame = 1


Query: 1   MAQKVVLKVMTMTDDKTKQKAIEAAADIYGVDSIAADLKDQKLTVIGSMDAVAIVKKLKK 60
           MAQKVVLKV+TMTDDKTKQKAIEAAADIYGVDSI AD+K+QKLTVIGSMD V IVKKLKK
Sbjct: 1   MAQKVVLKVLTMTDDKTKQKAIEAAADIYGVDSIVADVKEQKLTVIGSMDTVKIVKKLKK 60

Query: 61  VGKVDLISVGPAKEEKKEEKKEEKKEEKKEEKKEEKKEEKKEEKK 106
           VGKVD++SVGPAKEEKKEEKKEEKKEEKKEEKKEEKKEEKKEEKK
Sbjct: 61  VGKVDIVSVGPAKEEKKEEKKEEKKEEKKEEKKEEKKEEKKEEKK 105

[Close]

BLAST of CmaCh19G004080 vs. TrEMBL
Match: I1MPU0_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 145.6 bits (366), Expect = 3.4e-32
Identity = 97/105 (92.38%), Postives = 101/105 (96.19%), Query Frame = 1


Query: 1   MAQKVVLKVMTMTDDKTKQKAIEAAADIYGVDSIAADLKDQKLTVIGSMDAVAIVKKLKK 60
           MAQKVVLKVMTMTDDKTKQKAIEAAADIYGVDSI AD+K+QKLTVIG MD V IVKKLKK
Sbjct: 1   MAQKVVLKVMTMTDDKTKQKAIEAAADIYGVDSIVADVKEQKLTVIGQMDTVKIVKKLKK 60

Query: 61  VGKVDLISVGPAKEEKKEEKKEEKKEEKKEEKKEEKKEEKKEEKK 106
           VGKVD++SVGPAKEEKKEEKKEEKKEEKKEEKKEEKKEEKKEEKK
Sbjct: 61  VGKVDIVSVGPAKEEKKEEKKEEKKEEKKEEKKEEKKEEKKEEKK 105

[Close]

BLAST of CmaCh19G004080 vs. TrEMBL
Match: A0A103YDM2_CYNCS (Heavy metal-associated domain, HMA OS=Cynara cardunculus var. scolymus GN=Ccrd_014477 PE=4 SV=1)

HSP 1 Score: 145.6 bits (366), Expect = 3.4e-32
Identity = 99/106 (93.40%), Postives = 103/106 (97.17%), Query Frame = 1


Query: 1   MAQKVVLKVMTMTDDKTKQKAIEAAADIYGVDSIAADLKDQKLTVIGSMDAVAIVKKLKK 60
           MAQKV+LKV+TMTDDKTKQKAIEAAADIYGVDSIAADLKDQKLTVIG MD VA+VKKLKK
Sbjct: 1   MAQKVILKVLTMTDDKTKQKAIEAAADIYGVDSIAADLKDQKLTVIGEMDTVAVVKKLKK 60

Query: 61  VGKVDLISVGPAKE-EKKEEKKEEKKEEKKEEKKEEKKEEKKEEKK 106
           VGKVD+ISVGPAKE EKKEEKKEEKKEEKKEEKKEEKKEEKKEEKK
Sbjct: 61  VGKVDIISVGPAKEPEKKEEKKEEKKEEKKEEKKEEKKEEKKEEKK 106

[Close]

BLAST of CmaCh19G004080 vs. TAIR10
Match: AT5G23760.1 (AT5G23760.1 Copper transport protein family)

HSP 1 Score: 140.6 bits (353), Expect = 5.6e-34
Identity = 93/103 (90.29%), Postives = 101/103 (98.06%), Query Frame = 1


Query: 1   MAQKVVLKVMTMTDDKTKQKAIEAAADIYGVDSIAADLKDQKLTVIGSMDAVAIVKKLKK 60
           MAQKVVLKV+TMTDDKTKQKAIEAAADI+GVDSIAAD+KDQKLTVIG MDAVA+VKKLKK
Sbjct: 1   MAQKVVLKVLTMTDDKTKQKAIEAAADIFGVDSIAADMKDQKLTVIGLMDAVAVVKKLKK 60

Query: 61  VGKVDLISVGPAKEEKKEEKKEEKKEEKKEEKKEEKKEEKKEE 104
           VGKVDLISVGPAKEEKKEEKKEEKKEEKKEEKKEE+KEE+ ++
Sbjct: 61  VGKVDLISVGPAKEEKKEEKKEEKKEEKKEEKKEEQKEEEPKK 103

[Close]

BLAST of CmaCh19G004080 vs. TAIR10
Match: AT5G52740.1 (AT5G52740.1 Copper transport protein family)

HSP 1 Score: 51.2 bits (121), Expect = 4.5e-07
Identity = 42/87 (48.28%), Postives = 58/87 (66.67%), Query Frame = 1


Query: 3  QKVVLKVMTMTDDKTKQKAIEAAADIYGVDSIAADLKDQKLTVIGSMDAVAIVKKLKKVG 62
          Q VVLK + +  +KTKQKA+     + GV+S+  ++KD KLTV G +DA  IVKKLKK+ 
Sbjct: 2  QVVVLK-LDVHCEKTKQKAMSTVCCLSGVNSV--EVKDGKLTVTGEIDAYMIVKKLKKIC 61

Query: 63 KVDLISVGPAKEEKKEEKKEEKKEEKK 90
            + ISVGP KE +K++  + KK E K
Sbjct: 62 HTEFISVGPVKEPEKKKPDDPKKPETK 85

[Close]

BLAST of CmaCh19G004080 vs. TAIR10
Match: AT1G01490.1 (AT1G01490.1 Heavy metal transport/detoxification superfamily protein )

HSP 1 Score: 50.8 bits (120), Expect = 5.8e-07
Identity = 50/104 (48.08%), Postives = 76/104 (73.08%), Query Frame = 1


Query: 3   QKVVLKVMTMTDDKTKQKAIEAAADIYGVDSIAADLKDQKLTVIGSMDAVAIVKKLKKVG 62
           +K+VLK + + DD+ KQKA++  + + G+DSIA D+K++KLTVIG++D V +V KL+K  
Sbjct: 2   KKIVLK-LDLHDDRAKQKALKTVSTLPGIDSIAMDMKEKKLTVIGTVDPVNVVSKLRKYW 61

Query: 63  KV-DLISVGPAKEEKKEEKKEEKKEEKKEEKKEEKKEEKKEEKK 106
            + D++ VGPAKE +KE+K+E KKE   E  K+E +  K+E KK
Sbjct: 62  PMTDIVLVGPAKEPEKEKKEEPKKEGGGEPPKKEGEAPKEEGKK 104

[Close]

BLAST of CmaCh19G004080 vs. NCBI nr
Match: gi|590672720|ref|XP_007038690.1| (Copper transport protein family [Theobroma cacao])

HSP 1 Score: 148.3 bits (373), Expect = 7.6e-33
Identity = 99/105 (94.29%), Postives = 103/105 (98.10%), Query Frame = 1


Query: 1   MAQKVVLKVMTMTDDKTKQKAIEAAADIYGVDSIAADLKDQKLTVIGSMDAVAIVKKLKK 60
           MAQKVVLKV+TMTD KTKQKAIEAAADIYGVDSIAADLKDQKLTV+G MDAVA+VKKLKK
Sbjct: 55  MAQKVVLKVLTMTDVKTKQKAIEAAADIYGVDSIAADLKDQKLTVVGQMDAVAVVKKLKK 114

Query: 61  VGKVDLISVGPAKEEKKEEKKEEKKEEKKEEKKEEKKEEKKEEKK 106
           VGKVD+ISVGPAKEEKKEEKKEEKKEEKKEEKKEEKKEEKKEEKK
Sbjct: 115 VGKVDIISVGPAKEEKKEEKKEEKKEEKKEEKKEEKKEEKKEEKK 159

[Close]

BLAST of CmaCh19G004080 vs. NCBI nr
Match: gi|703065872|ref|XP_010087564.1| (hypothetical protein L484_001022 [Morus notabilis])

HSP 1 Score: 147.5 bits (371), Expect = 1.3e-32
Identity = 97/105 (92.38%), Postives = 103/105 (98.10%), Query Frame = 1


Query: 1   MAQKVVLKVMTMTDDKTKQKAIEAAADIYGVDSIAADLKDQKLTVIGSMDAVAIVKKLKK 60
           MAQKVVLKVMTMTDDKTKQKA+EAAADIYGVDSIAAD+KDQKLTVIG MD VA+VKKLK+
Sbjct: 1   MAQKVVLKVMTMTDDKTKQKAMEAAADIYGVDSIAADIKDQKLTVIGQMDTVAVVKKLKR 60

Query: 61  VGKVDLISVGPAKEEKKEEKKEEKKEEKKEEKKEEKKEEKKEEKK 106
           VGKVD+ISVGPAKEEKKEEKKE+KKEEKKEEKKEEKKEEKKEEKK
Sbjct: 61  VGKVDIISVGPAKEEKKEEKKEDKKEEKKEEKKEEKKEEKKEEKK 105

[Close]

BLAST of CmaCh19G004080 vs. NCBI nr
Match: gi|1012178043|ref|XP_015967424.1| (PREDICTED: UPF0329 protein ECU05_1680/ECU11_0050-like isoform X2 [Arachis duranensis])

HSP 1 Score: 147.1 bits (370), Expect = 1.7e-32
Identity = 98/105 (93.33%), Postives = 103/105 (98.10%), Query Frame = 1


Query: 1   MAQKVVLKVMTMTDDKTKQKAIEAAADIYGVDSIAADLKDQKLTVIGSMDAVAIVKKLKK 60
           MAQKVVLKV+TMTDDKTKQKAIEAAADI+GVDSIAAD+K+QKLTVIG MD VAIVKKLKK
Sbjct: 1   MAQKVVLKVLTMTDDKTKQKAIEAAADIFGVDSIAADIKEQKLTVIGQMDTVAIVKKLKK 60

Query: 61  VGKVDLISVGPAKEEKKEEKKEEKKEEKKEEKKEEKKEEKKEEKK 106
           VGKVD+ISVGPAKEEKKEEKKEEKKEEKKEEKKEEKKEEKKEEKK
Sbjct: 61  VGKVDIISVGPAKEEKKEEKKEEKKEEKKEEKKEEKKEEKKEEKK 105

[Close]

BLAST of CmaCh19G004080 vs. NCBI nr
Match: gi|731424165|ref|XP_010662763.1| (PREDICTED: synaptic vesicle membrane protein VAT-1 homolog isoform X2 [Vitis vinifera])

HSP 1 Score: 146.4 bits (368), Expect = 2.9e-32
Identity = 97/105 (92.38%), Postives = 104/105 (99.05%), Query Frame = 1


Query: 1   MAQKVVLKVMTMTDDKTKQKAIEAAADIYGVDSIAADLKDQKLTVIGSMDAVAIVKKLKK 60
           MAQKVVLKVMTM+DDKTKQKA+EAAADIYGVDSIAAD+K+QKLTVIG MDAVA+VKKLKK
Sbjct: 1   MAQKVVLKVMTMSDDKTKQKAMEAAADIYGVDSIAADMKEQKLTVIGVMDAVAVVKKLKK 60

Query: 61  VGKVDLISVGPAKEEKKEEKKEEKKEEKKEEKKEEKKEEKKEEKK 106
           VGKVD+ISVGPAKEEKKEEKKEEKKEEKKEEKKEEKKE+KKEEKK
Sbjct: 61  VGKVDIISVGPAKEEKKEEKKEEKKEEKKEEKKEEKKEDKKEEKK 105

[Close]

BLAST of CmaCh19G004080 vs. NCBI nr
Match: gi|922352577|ref|XP_013452105.1| (heavy metal-associated domain protein, putative [Medicago truncatula])

HSP 1 Score: 146.0 bits (367), Expect = 3.8e-32
Identity = 97/105 (92.38%), Postives = 102/105 (97.14%), Query Frame = 1


Query: 1   MAQKVVLKVMTMTDDKTKQKAIEAAADIYGVDSIAADLKDQKLTVIGSMDAVAIVKKLKK 60
           MAQKVVLKV+TMTDDKTKQKAIEAAADIYGVDSI AD+K+QKLTVIGSMD V IVKKLKK
Sbjct: 1   MAQKVVLKVLTMTDDKTKQKAIEAAADIYGVDSIVADVKEQKLTVIGSMDTVKIVKKLKK 60

Query: 61  VGKVDLISVGPAKEEKKEEKKEEKKEEKKEEKKEEKKEEKKEEKK 106
           VGKVD++SVGPAKEEKKEEKKEEKKEEKKEEKKEEKKEEKKEEKK
Sbjct: 61  VGKVDIVSVGPAKEEKKEEKKEEKKEEKKEEKKEEKKEEKKEEKK 105

The following BLAST results are available for this feature:

BLAST of CmaCh19G004080 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmaCh19G004080 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A061G0W6_THECC	5.3e-33	94.29	Copper transport protein family OS=Theobroma cacao GN=TCM_015168 PE=4 SV=1	[more]
W9QN89_9ROSA	9.0e-33	92.38	Uncharacterized protein OS=Morus notabilis GN=L484_001022 PE=4 SV=1	[more]
A0A072UAJ9_MEDTR	2.6e-32	92.38	Heavy metal-associated domain protein, putative OS=Medicago truncatula GN=MTR_6g...	[more]
I1MPU0_SOYBN	3.4e-32	92.38	Uncharacterized protein OS=Glycine max PE=4 SV=1	[more]
A0A103YDM2_CYNCS	3.4e-32	93.40	Heavy metal-associated domain, HMA OS=Cynara cardunculus var. scolymus GN=Ccrd_0...	[more]

BLAST of CmaCh19G004080 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G23760.1	5.6e-34	90.29	Copper transport protein family	[more]
AT5G52740.1	4.5e-07	48.28	Copper transport protein family	[more]
AT1G01490.1	5.8e-07	48.08	Heavy metal transport/detoxification superfamily protein	[more]

BLAST of CmaCh19G004080 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|590672720\|ref\|XP_007038690.1\|	7.6e-33	94.29	Copper transport protein family [Theobroma cacao]	[more]
gi\|703065872\|ref\|XP_010087564.1\|	1.3e-32	92.38	hypothetical protein L484_001022 [Morus notabilis]	[more]
gi\|1012178043\|ref\|XP_015967424.1\|	1.7e-32	93.33	PREDICTED: UPF0329 protein ECU05_1680/ECU11_0050-like isoform X2 [Arachis durane...	[more]
gi\|731424165\|ref\|XP_010662763.1\|	2.9e-32	92.38	PREDICTED: synaptic vesicle membrane protein VAT-1 homolog isoform X2 [Vitis vin...	[more]
gi\|922352577\|ref\|XP_013452105.1\|	3.8e-32	92.38	heavy metal-associated domain protein, putative [Medicago truncatula]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR006121	HMA_dom

Vocabulary: **Biological Process**
Term	Definition
GO:0030001	metal ion transport

Vocabulary: **Molecular Function**
Term	Definition
GO:0046872	metal ion binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0030001	metal ion transport
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0046872	metal ion binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh19G004080.1	CmaCh19G004080.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006121	Heavy metal-associated domain, HMA	PFAM	PF00403	HMA	coord: 6..62 score: 1.
IPR006121	Heavy metal-associated domain, HMA	unknown	SSF55008	HMA, heavy metal-associated domain	coord: 2..63 score: 1.1
None	No IPR available	unknown	Coil	Coil	coord: 72..105 scor
None	No IPR available	GENE3D	G3DSA:3.30.70.100		coord: 3..63 score: 6.
None	No IPR available	PANTHER	PTHR22814	COPPER TRANSPORT PROTEIN ATOX1-RELATED	coord: 1..105 score: 7.6
None	No IPR available	PANTHER	PTHR22814:SF52	SUBFAMILY NOT NAMED	coord: 1..105 score: 7.6

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh19G004080	Csa3G914040	Cucumber (Chinese Long) v2	cmacuB517
CmaCh19G004080	MELO3C003320	Melon (DHL92) v3.5.1	cmameB469
CmaCh19G004080	ClCG09G012900	Watermelon (Charleston Gray)	cmawcgB440
CmaCh19G004080	CSPI03G47660	Wild cucumber (PI 183967)	cmacpiB518
CmaCh19G004080	CmoCh02G010840	Cucurbita moschata (Rifu)	cmacmoB527
CmaCh19G004080	CmoCh19G004160	Cucurbita moschata (Rifu)	cmacmoB508
CmaCh19G004080	Lsi05G000100	Bottle gourd (USVL1VR-Ls)	cmalsiB490
CmaCh19G004080	Cp4.1LG15g03140	Cucurbita pepo (Zucchini)	cmacpeB522
CmaCh19G004080	Cp4.1LG05g06460	Cucurbita pepo (Zucchini)	cmacpeB548
CmaCh19G004080	CsaV3_3G049960	Cucumber (Chinese Long) v3	cmacucB0625
CmaCh19G004080	Cla97C09G175630	Watermelon (97103) v2	cmawmbB549
CmaCh19G004080	Bhi05G000439	Wax gourd	cmawgoB0646
CmaCh19G004080	CsGy3G044910	Cucumber (Gy14) v2	cgybcmaB385
CmaCh19G004080	Carg25090	Silver-seed gourd	carcmaB0294
CmaCh19G004080	Carg08411	Silver-seed gourd	carcmaB0997

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmaCh19G004080	CmaCh02G010660	Cucurbita maxima (Rimu)	cmacmaB455

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh19G004080	Melon (DHL92) v3.6.1	cmamedB544
CmaCh19G004080	Melon (DHL92) v3.6.1	cmamedB547
CmaCh19G004080	Cucumber (Chinese Long) v3	cmacucB0616
CmaCh19G004080	Cucumber (Gy14) v1	cgycmaB0868
CmaCh19G004080	Cucumber (Gy14) v1	cgycmaB0869
CmaCh19G004080	Cucumber (Chinese Long) v2	cmacuB511
CmaCh19G004080	Melon (DHL92) v3.5.1	cmameB473
CmaCh19G004080	Watermelon (97103) v1	cmawmB472
CmaCh19G004080	Cucumber (Gy14) v2	cgybcmaB377