CmaCh18G009040 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh18G009040
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Thioredoxin-like 8 family protein
Location	Cma_Chr18 : 7779223 .. 7781227 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCGGCAGCCACCCACGACTTGAGTTTTAATTAATTAATTTGTTTTATTTTATTCGGTTTTTTCGTTTCTTCTTCCACAAAATGGCGTTTTGTTGAAGGTTTTACAGCTTGGGAGATCGATCAGGAACAATCCTTCAACTGACTCTGAATCTCCCGGTGGGACCCACCGGAACCCTCTTCAACAGGCCGCCGGCGCCGCCACCCTCCGACCATTTCTTTTTCGTTTCTGTTGCCGTTTCCTAATTCTTCATCCTTCCGAAATGGTGAAAGTTTTGCCTGTTCACTTCGGAACCTTGAAATCTTTCCCTAAATTAGACGCTCGTTTTGATCTTCCGGCGGCCAAGCTCACTGTCTCTGGTTTCAACAGGCTTCCTCTGTCCCAAAAATTTCCGCCGCTTTCCTTGAAAGTTTCTGCGACTGGTGAGAAGATTTCGGTGCTTGGAGATTGGACCCAAGAGAGTTCCCTGCAGTTTTGTGATGAATCTCCTGTGTCGATCGAGCTCAAGTCCATTTGTAGTGAACTTGAGTTCGATAAGGCTATTACGGATGCAGAGAAACGAAACGAGCCCGTGATTATTGTATGGTATGTATGCATTTCTTGTCGGCTTTTCTGGGAAATGTTCACTTAATTACGAAGGTTTCTTCCAGAGCAGAGAAAGAAATGTAAACGATGTGAATGCATTTGACCTTGACTGGATAGTGTTTGATCAGAAATTTATCTGTTTATCAGGAAAAATTGTCCTCAATTGCTTGATTTTCCCTTGCAATTTCATTGATTGTGATCATTTTGAATTGAACGATTTGATATTTTTTGTCCAGTTTTCATTACCAGCATTTCAAGCAGTATTTTATATTCTTTTGTTGAAAAATGAGTTCGTGTGGATCTGTAGGATGGCAAACTGGTGCAGAAATTATATTTATCTAAAGCCCCAATTGGAAAGATTGGCTGCTGATTATTACCCCAGGTTAGCTCTTAGCTCATTTTTCATCAACTGAATGTAAAATATGAATTGTATCATCATTTTCCAAGCGCTGGATAATGCTTAGAAGACCAGTGTGCTAAGTACTTACTGAAATTGTGCATGTGCTTGATCAATTGTAGATTGCAATTCTACTGCATTGATGTCAATATGGTGCCTCACAAGCTAGTTGTTCGTGCAGGATTAGCTGTAAGTTCTTTCCAAAGCTTTTCGATGTTTCTTCCATTTTGTTTGTGTTGCCATAAATCTTTATAAGGGAGTTGAGTTCTGATAAATCCAATGGATATTGTTCTTGAGGTTCTGTTTACAATTGAAGTTAGACTCGTGTTTCGTTGCCTTCTCGAACATATACAATTTACGGTTCAATCATAGGAGACATAGGACATGTTGAGCCTTTGTTACTTTGATGAATTTGCATCTGTTTTGATGTTTATTAACATTCAATCTTTCCATTCATGGGTCTACAAGTTCTAATAGTTTCAAATTTTCACTTTTCTTCATGTATCTCTACTGTTCGTTTTTTAATCTACCAGAAGATGCCAGCCATACAGGTGAGTTTCTTCCCGATCAGATATCTTACAACTGGAATCCCTCCTCTCTACTAATGTCAAGATCTTGATTATGTTTGTTTGCAGCTATGGAAGGATAGTAAGAAACAAGACGAGGTGATTGGTCTCTACAAAGCATATTTAGTTGTCAATGACGTTCAGAAAATGATTGAGCGTGAGCTTACAGGCGAGTAACTTACGATTCATTCTTACCCGCATCGTCTTACCCACTTTGTGGTATTAGAATTGATTTGACAGCATCTCACAGAAATTCCTTTCTGCTTATATTCATCAACATAAAGAAGAAGGCCTGGCTTGCCCTCTTGCCAAGTTTTTTTCATTACAGATATCATTTCTTTGTTGTCATAAGGTGGATGATCTAACATGTATGTCCAATTCTTATCGATATATGTATTCGTTGTCACATTATGAGGATGTCTTATATGAAAGGCTTTACCAGCGTTTTTACACCATTC

mRNA sequence

ATGCGGCAGCCACCCACGACTTGAGTTTTAATTAATTAATTTGTTTTATTTTATTCGGTTTTTTCGTTTCTTCTTCCACAAAATGGCGTTTTGTTGAAGGTTTTACAGCTTGGGAGATCGATCAGGAACAATCCTTCAACTGACTCTGAATCTCCCGGTGGGACCCACCGGAACCCTCTTCAACAGGCCGCCGGCGCCGCCACCCTCCGACCATTTCTTTTTCGTTTCTGTTGCCGTTTCCTAATTCTTCATCCTTCCGAAATGGTGAAAGTTTTGCCTGTTCACTTCGGAACCTTGAAATCTTTCCCTAAATTAGACGCTCGTTTTGATCTTCCGGCGGCCAAGCTCACTGTCTCTGGTTTCAACAGGCTTCCTCTGTCCCAAAAATTTCCGCCGCTTTCCTTGAAAGTTTCTGCGACTGGTGAGAAGATTTCGGTGCTTGGAGATTGGACCCAAGAGAGTTCCCTGCAGTTTTGTGATGAATCTCCTGTGTCGATCGAGCTCAAGTCCATTTGTAGTGAACTTGAGTTCGATAAGGCTATTACGGATGCAGAGAAACGAAACGAGCCCGTGATTATTGTATGGATGGCAAACTGGTGCAGAAATTATATTTATCTAAAGCCCCAATTGGAAAGATTGGCTGCTGATTATTACCCCAGATTGCAATTCTACTGCATTGATGTCAATATGGTGCCTCACAAGCTAGTTGTTCGTGCAGGATTAGCTAAGATGCCAGCCATACAGCTATGGAAGGATAGTAAGAAACAAGACGAGGTGATTGGTCTCTACAAAGCATATTTAGTTGTCAATGACGTTCAGAAAATGATTGAGCGTGAGCTTACAGGCGAGTAACTTACGATTCATTCTTACCCGCATCGTCTTACCCACTTTGTGGTATTAGAATTGATTTGACAGCATCTCACAGAAATTCCTTTCTGCTTATATTCATCAACATAAAGAAGAAGGCCTGGCTTGCCCTCTTGCCAAGTTTTTTTCATTACAGATATCATTTCTTTGTTGTCATAAGGTGGATGATCTAACATGTATGTCCAATTCTTATCGATATATGTATTCGTTGTCACATTATGAGGATGTCTTATATGAAAGGCTTTACCAGCGTTTTTACACCATTC

Coding sequence (CDS)

ATGGTGAAAGTTTTGCCTGTTCACTTCGGAACCTTGAAATCTTTCCCTAAATTAGACGCTCGTTTTGATCTTCCGGCGGCCAAGCTCACTGTCTCTGGTTTCAACAGGCTTCCTCTGTCCCAAAAATTTCCGCCGCTTTCCTTGAAAGTTTCTGCGACTGGTGAGAAGATTTCGGTGCTTGGAGATTGGACCCAAGAGAGTTCCCTGCAGTTTTGTGATGAATCTCCTGTGTCGATCGAGCTCAAGTCCATTTGTAGTGAACTTGAGTTCGATAAGGCTATTACGGATGCAGAGAAACGAAACGAGCCCGTGATTATTGTATGGATGGCAAACTGGTGCAGAAATTATATTTATCTAAAGCCCCAATTGGAAAGATTGGCTGCTGATTATTACCCCAGATTGCAATTCTACTGCATTGATGTCAATATGGTGCCTCACAAGCTAGTTGTTCGTGCAGGATTAGCTAAGATGCCAGCCATACAGCTATGGAAGGATAGTAAGAAACAAGACGAGGTGATTGGTCTCTACAAAGCATATTTAGTTGTCAATGACGTTCAGAAAATGATTGAGCGTGAGCTTACAGGCGAGTAA

Protein sequence

MVKVLPVHFGTLKSFPKLDARFDLPAAKLTVSGFNRLPLSQKFPPLSLKVSATGEKISVLGDWTQESSLQFCDESPVSIELKSICSELEFDKAITDAEKRNEPVIIVWMANWCRNYIYLKPQLERLAADYYPRLQFYCIDVNMVPHKLVVRAGLAKMPAIQLWKDSKKQDEVIGLYKAYLVVNDVQKMIERELTGE

Homology

[Close]

BLAST of CmaCh18G009040 vs. Swiss-Prot
Match: TRL32_ARATH (Thioredoxin-like 3-2, chloroplastic OS=Arabidopsis thaliana GN=WCRKC2 PE=2 SV=1)

HSP 1 Score: 179.5 bits (454), Expect = 3.6e-44
Identity = 87/169 (51.48%), Postives = 120/169 (71.01%), Query Frame = 1


Query: 24  LPAAKLTVSGFNRLPLSQKFPPLSLKVSATGEKISVLGDWTQESSLQFCDESPVSIELKS 83
           +P  + T S F+R P + K+   + K+    E+I  +    Q+  LQ  D+SPVS+EL  
Sbjct: 22  VPPYRQTSSSFSR-PRNFKYHSFTDKICLAAERIRAVDIQKQDGGLQELDDSPVSVELGP 81

Query: 84  ICSELEFDKAITDAEKRNEPVIIVWMANWCRNYIYLKPQLERLAADYYPRLQFYCIDVNM 143
           IC E  FD+ + DA+K  E V+IVWMA WCR  IYLKP+LE+LAA++YPRL+FY +DVN 
Sbjct: 82  ICGESHFDQVMEDAQKLGESVVIVWMAAWCRKCIYLKPKLEKLAAEFYPRLRFYHVDVNA 141

Query: 144 VPHKLVVRAGLAKMPAIQLWKDSKKQDEVIGLYKAYLVVNDVQKMIERE 193
           VP++LV RAG+ KMP IQLW+D +KQ EVIG +KA+ VVN+V++MIE +
Sbjct: 142 VPYRLVSRAGVTKMPTIQLWRDGQKQAEVIGGHKAHFVVNEVREMIEND 189

[Close]

BLAST of CmaCh18G009040 vs. Swiss-Prot
Match: TRL31_ARATH (Thioredoxin-like 3-1, chloroplastic OS=Arabidopsis thaliana GN=WCRKC1 PE=2 SV=3)

HSP 1 Score: 125.2 bits (313), Expect = 8.0e-28
Identity = 54/116 (46.55%), Postives = 85/116 (73.28%), Query Frame = 1


Query: 76  PVSIELKSICSELEFDKAITDAEKRNEPVIIVWMANWCRNYIYLKPQLERLAADYYPRLQ 135
           P ++E++ I +  E D  ++ A + ++P+II WMA+WCR  IYLKP+LE+LAA+Y  R +
Sbjct: 93  PTTLEMEPINNVEELDAVLSHARQLSQPIIIEWMASWCRKCIYLKPKLEKLAAEYNNRAK 152

Query: 136 FYCIDVNMVPHKLVVRAGLAKMPAIQLWKDSKKQDEVIGLYKAYLVVNDVQKMIER 192
           FY +DVN VP  LV R  ++KMP IQLWK+ + ++EVIG +K +LV+ +V+++I +
Sbjct: 153 FYYVDVNKVPQTLVKRGNISKMPTIQLWKEDEMKEEVIGGHKGWLVIEEVRELINK 208

[Close]

BLAST of CmaCh18G009040 vs. Swiss-Prot
Match: TRL31_ORYSJ (Thioredoxin-like 3-1, chloroplastic OS=Oryza sativa subsp. japonica GN=Os02g0774100 PE=3 SV=2)

HSP 1 Score: 115.5 bits (288), Expect = 6.4e-25
Identity = 57/131 (43.51%), Postives = 88/131 (67.18%), Query Frame = 1


Query: 61  GDWTQESSLQFCDESPVSIELKSICSELEFDKAITDAEKRNEPVIIVWMANWCRNYIYLK 120
           GD    +   F D S   +E++ I S  + D A+  + +  +P+II WMA+WCR  IYLK
Sbjct: 63  GDGMLRAEAYFWDVSK-PVEMEEIDSMEKLDDALRWSVENKQPIIIDWMASWCRKCIYLK 122

Query: 121 PQLERLAADYYPRLQFYCIDVNMVPHKLVVRAGLAKMPAIQLWKDSKKQDEVIGLYKAYL 180
           P+LE++A ++ P ++FY +DVN VP  +V R  + KMP IQLWKD +   EVIG +KA+L
Sbjct: 123 PRLEKIAGEF-PGVRFYFVDVNKVPQTVVKRGNITKMPTIQLWKDGEWAAEVIGGHKAWL 182

Query: 181 VVNDVQKMIER 192
           V+++V++MI++
Sbjct: 183 VMDEVREMIQK 191

[Close]

BLAST of CmaCh18G009040 vs. Swiss-Prot
Match: TRXH_CHLRE (Thioredoxin H-type OS=Chlamydomonas reinhardtii GN=TRXH PE=1 SV=3)

HSP 1 Score: 53.9 bits (128), Expect = 2.3e-06
Identity = 25/91 (27.47%), Postives = 49/91 (53.85%), Query Frame = 1


Query: 84  ICSELEFDKAITDAEKRNEPVIIVWMANWCRNYIYLKPQLERLAADYYPRLQFYCIDVNM 143
           I S+  +D  +   ++ ++P+++ + A WC     + P  E L+ DY  ++ F  +DV+ 
Sbjct: 8   IDSKAAWDAQLAKGKEEHKPIVVDFTATWCGPCKMIAPLFETLSNDYAGKVIFLKVDVDA 67

Query: 144 VPHKLVVRAGLAKMPAIQLWKDSKKQDEVIG 175
           V   +   AG+  MP   ++KD  K D+++G
Sbjct: 68  VA-AVAEAAGITAMPTFHVYKDGVKADDLVG 97

[Close]

BLAST of CmaCh18G009040 vs. TrEMBL
Match: A0A0A0KUX7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G622670 PE=4 SV=1)

HSP 1 Score: 329.7 bits (844), Expect = 2.4e-87
Identity = 163/202 (80.69%), Postives = 177/202 (87.62%), Query Frame = 1


Query: 1   MVKVLPVHFGTLKSFPKLDARFDLP------AAKLTVSGFNRLPLSQKFPPLSLKVSATG 60
           MVK LP+H G +KSFPK  + FDLP      +A+L  SGFNRLPLS+KFPPL  KVSATG
Sbjct: 1   MVKALPLHHGIVKSFPKFGSSFDLPPSPQLLSARLAGSGFNRLPLSRKFPPLFQKVSATG 60

Query: 61  EKISVLGDWTQESSLQFCDESPVSIELKSICSELEFDKAITDAEKRNEPVIIVWMANWCR 120
           EK S+ G WTQ+S+LQF DESPVSIELKSI SELEFDKAI DAE+RNE VI+VWMANWCR
Sbjct: 61  EKTSLFGAWTQDSALQFRDESPVSIELKSISSELEFDKAIADAEERNELVILVWMANWCR 120

Query: 121 NYIYLKPQLERLAADYYPRLQFYCIDVNMVPHKLVVRAGLAKMPAIQLWKDSKKQDEVIG 180
           NYIYLKPQLERLAADYYPRLQFYCIDVN+VPHKLVVRAGLAKMPAIQLWKD KKQDEV+G
Sbjct: 121 NYIYLKPQLERLAADYYPRLQFYCIDVNVVPHKLVVRAGLAKMPAIQLWKDGKKQDEVVG 180

Query: 181 LYKAYLVVNDVQKMIERELTGE 197
           LYKAYLVVNDV+KMIERELT E
Sbjct: 181 LYKAYLVVNDVRKMIERELTDE 202

[Close]

BLAST of CmaCh18G009040 vs. TrEMBL
Match: D7TM63_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_13s0019g04650 PE=4 SV=1)

HSP 1 Score: 197.6 bits (501), Expect = 1.4e-47
Identity = 98/172 (56.98%), Postives = 125/172 (72.67%), Query Frame = 1


Query: 21  RFDLPAAKLTVSGFNRLPLSQKFPPLSLKVSATGEKISVLGDWTQESSLQFCDESPVSIE 80
           +F +P   L++S F R  L+  FP    K+  +G K+  L  W QE  LQ  D+SPVS+E
Sbjct: 28  QFSIPG--LSISDFPRKSLN--FPQ---KIGVSGGKVWALAAWNQEGPLQDLDDSPVSVE 87

Query: 81  LKSICSELEFDKAITDAEKRNEPVIIVWMANWCRNYIYLKPQLERLAADYYPRLQFYCID 140
           LK I S+ +FD+ + +A++  E V IVWMA WCR  IYLKP+LE+LAA+YYPRL+FYC+D
Sbjct: 88  LKPISSDTQFDRILGEAQQLEESVAIVWMATWCRKCIYLKPKLEKLAAEYYPRLRFYCVD 147

Query: 141 VNMVPHKLVVRAGLAKMPAIQLWKDSKKQDEVIGLYKAYLVVNDVQKMIERE 193
           VN VPHKLV RA + KMP IQLWKDSKKQ EVIG +KAY VVN+V++MIE E
Sbjct: 148 VNTVPHKLVARAAVTKMPTIQLWKDSKKQAEVIGGHKAYFVVNEVREMIENE 192

[Close]

BLAST of CmaCh18G009040 vs. TrEMBL
Match: A0A061FN59_THECC (WCRKC thioredoxin 2 OS=Theobroma cacao GN=TCM_043218 PE=4 SV=1)

HSP 1 Score: 195.3 bits (495), Expect = 7.0e-47
Identity = 91/173 (52.60%), Postives = 125/173 (72.25%), Query Frame = 1


Query: 22  FDLPAAKLTVSGFNRLPLSQKFPPLSLKVSATGEKISVLGDWTQESSLQFCDESPVSIEL 81
           F  P  K   S F+ L L +K    S +++  G K  +   W ++  L+  D++P+++EL
Sbjct: 30  FATPFLKNPCSSFDGLSLKRKTLSFSERINRFGGKFGIFNAWKKDGYLEELDDAPLAVEL 89

Query: 82  KSICSELEFDKAITDAEKRNEPVIIVWMANWCRNYIYLKPQLERLAADYYPRLQFYCIDV 141
           + ICSE +FD+ I +A++  E +II+WMA+WCR  IYLKP+LE+LAA+YYPRL+FY +DV
Sbjct: 90  QQICSESQFDRVIAEAQQLEESLIILWMASWCRKCIYLKPKLEKLAAEYYPRLRFYRVDV 149

Query: 142 NMVPHKLVVRAGLAKMPAIQLWKDSKKQDEVIGLYKAYLVVNDVQKMIERELT 195
           N VPH LV RAG+ KMP IQLW+DSKKQ EVIG +KAYLVVN+V++MIE E T
Sbjct: 150 NTVPHNLVARAGVTKMPTIQLWRDSKKQAEVIGGHKAYLVVNEVREMIENECT 202

[Close]

BLAST of CmaCh18G009040 vs. TrEMBL
Match: A0A0D2UWR5_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G311900 PE=4 SV=1)

HSP 1 Score: 189.5 bits (480), Expect = 3.9e-45
Identity = 84/156 (53.85%), Postives = 116/156 (74.36%), Query Frame = 1


Query: 39  LSQKFPPLSLKVSATGEKISVLGDWTQESSLQFCDESPVSIELKSICSELEFDKAITDAE 98
           L +K      K++  G    +   W +E  L+  D++P+++EL+ ICSE +FD+ I +A+
Sbjct: 47  LKRKILGFDEKINGFGGNFGIFSAWREEGQLEELDDAPLTVELQQICSESQFDRVIAEAQ 106

Query: 99  KRNEPVIIVWMANWCRNYIYLKPQLERLAADYYPRLQFYCIDVNMVPHKLVVRAGLAKMP 158
           +  E +II+WMA+WCR  IYLKP+LE+LAAD++PRL+FYC+DVN VPH LV RAG+ KMP
Sbjct: 107 QLEESLIILWMASWCRKCIYLKPKLEKLAADFHPRLRFYCVDVNTVPHNLVARAGVTKMP 166

Query: 159 AIQLWKDSKKQDEVIGLYKAYLVVNDVQKMIERELT 195
            IQLW+D KKQ EVIG +KAYLVVN+V++MIE E T
Sbjct: 167 TIQLWRDGKKQAEVIGGHKAYLVVNEVRQMIENECT 202

[Close]

BLAST of CmaCh18G009040 vs. TrEMBL
Match: A0A059ACK0_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_J01067 PE=4 SV=1)

HSP 1 Score: 183.7 bits (465), Expect = 2.1e-43
Identity = 95/169 (56.21%), Postives = 121/169 (71.60%), Query Frame = 1


Query: 24  LPAAKLTVSGFNRLPLSQKFPPLSLKVSATGEKISVLGDWTQESSLQFCDESPVSIELKS 83
           +PAA  TV+G  R  L +  P     + A G+    L +          D+SPVS+EL+ 
Sbjct: 40  VPAAFGTVAG--RSSLGRAVPRRVSALRAVGQDGYALKEEL--------DDSPVSVELEP 99

Query: 84  ICSELEFDKAITDAEKRNEPVIIVWMANWCRNYIYLKPQLERLAADYYPRLQFYCIDVNM 143
           I SE +FD+ + +A++  E VI+VWMA+WCR  IYLKP+LE+LAADYYPRL+FYC+DVN 
Sbjct: 100 IGSESQFDRVVAEAQQLEESVIVVWMASWCRKCIYLKPKLEKLAADYYPRLRFYCVDVNK 159

Query: 144 VPHKLVVRAGLAKMPAIQLWKDSKKQDEVIGLYKAYLVVNDVQKMIERE 193
           VPHKLV RAG+ KMP IQLWKDSKKQ EVIG +KAYLVVN+V++MIE E
Sbjct: 160 VPHKLVARAGVTKMPTIQLWKDSKKQAEVIGGHKAYLVVNEVREMIENE 198

[Close]

BLAST of CmaCh18G009040 vs. TAIR10
Match: AT5G04260.1 (AT5G04260.1 WCRKC thioredoxin 2)

HSP 1 Score: 179.5 bits (454), Expect = 2.0e-45
Identity = 87/169 (51.48%), Postives = 120/169 (71.01%), Query Frame = 1


Query: 24  LPAAKLTVSGFNRLPLSQKFPPLSLKVSATGEKISVLGDWTQESSLQFCDESPVSIELKS 83
           +P  + T S F+R P + K+   + K+    E+I  +    Q+  LQ  D+SPVS+EL  
Sbjct: 22  VPPYRQTSSSFSR-PRNFKYHSFTDKICLAAERIRAVDIQKQDGGLQELDDSPVSVELGP 81

Query: 84  ICSELEFDKAITDAEKRNEPVIIVWMANWCRNYIYLKPQLERLAADYYPRLQFYCIDVNM 143
           IC E  FD+ + DA+K  E V+IVWMA WCR  IYLKP+LE+LAA++YPRL+FY +DVN 
Sbjct: 82  ICGESHFDQVMEDAQKLGESVVIVWMAAWCRKCIYLKPKLEKLAAEFYPRLRFYHVDVNA 141

Query: 144 VPHKLVVRAGLAKMPAIQLWKDSKKQDEVIGLYKAYLVVNDVQKMIERE 193
           VP++LV RAG+ KMP IQLW+D +KQ EVIG +KA+ VVN+V++MIE +
Sbjct: 142 VPYRLVSRAGVTKMPTIQLWRDGQKQAEVIGGHKAHFVVNEVREMIEND 189

[Close]

BLAST of CmaCh18G009040 vs. TAIR10
Match: AT5G06690.2 (AT5G06690.2 WCRKC thioredoxin 1)

HSP 1 Score: 85.9 bits (211), Expect = 3.0e-17
Identity = 37/80 (46.25%), Postives = 56/80 (70.00%), Query Frame = 1


Query: 76  PVSIELKSICSELEFDKAITDAEKRNEPVIIVWMANWCRNYIYLKPQLERLAADYYPRLQ 135
           P ++E++ I +  E D  ++ A + ++P+II WMA+WCR  IYLKP+LE+LAA+Y  R +
Sbjct: 93  PTTLEMEPINNVEELDAVLSHARQLSQPIIIEWMASWCRKCIYLKPKLEKLAAEYNNRAK 152

Query: 136 FYCIDVNMVPHKLVVRAGLA 156
           FY +DVN VP  LV R  ++
Sbjct: 153 FYYVDVNKVPQTLVKRGNIS 172

[Close]

BLAST of CmaCh18G009040 vs. NCBI nr
Match: gi|659092010|ref|XP_008446852.1| (PREDICTED: thioredoxin-like 3-2, chloroplastic isoform X8 [Cucumis melo])

HSP 1 Score: 334.7 bits (857), Expect = 1.1e-88
Identity = 165/202 (81.68%), Postives = 179/202 (88.61%), Query Frame = 1


Query: 1   MVKVLPVHFGTLKSFPKLDARFDLP------AAKLTVSGFNRLPLSQKFPPLSLKVSATG 60
           MVK LP+H G +KSFPK D+ FDLP      +A+L  SGFNRLPLS+KFPP+  KVSATG
Sbjct: 1   MVKALPLHLGIVKSFPKFDSSFDLPPSPQLLSARLPGSGFNRLPLSRKFPPIFQKVSATG 60

Query: 61  EKISVLGDWTQESSLQFCDESPVSIELKSICSELEFDKAITDAEKRNEPVIIVWMANWCR 120
           EK S+LG WTQ+S+LQF DESPVSIELKSI SELEFDKAI DAE+RNE VI+VWMANWCR
Sbjct: 61  EKTSLLGAWTQDSALQFRDESPVSIELKSISSELEFDKAIADAEERNELVILVWMANWCR 120

Query: 121 NYIYLKPQLERLAADYYPRLQFYCIDVNMVPHKLVVRAGLAKMPAIQLWKDSKKQDEVIG 180
           NYIYLKPQLERLAADYYPRLQFYCIDVNMVPHKLVVRAGLAKMPAIQLWKD KKQDEV+G
Sbjct: 121 NYIYLKPQLERLAADYYPRLQFYCIDVNMVPHKLVVRAGLAKMPAIQLWKDGKKQDEVVG 180

Query: 181 LYKAYLVVNDVQKMIERELTGE 197
           LYKAYLVVNDV+KMIERELT E
Sbjct: 181 LYKAYLVVNDVRKMIERELTDE 202

[Close]

BLAST of CmaCh18G009040 vs. NCBI nr
Match: gi|778706568|ref|XP_004142496.2| (PREDICTED: thioredoxin-like 3-2, chloroplastic isoform X2 [Cucumis sativus])

HSP 1 Score: 329.7 bits (844), Expect = 3.4e-87
Identity = 163/202 (80.69%), Postives = 177/202 (87.62%), Query Frame = 1


Query: 1   MVKVLPVHFGTLKSFPKLDARFDLP------AAKLTVSGFNRLPLSQKFPPLSLKVSATG 60
           MVK LP+H G +KSFPK  + FDLP      +A+L  SGFNRLPLS+KFPPL  KVSATG
Sbjct: 1   MVKALPLHHGIVKSFPKFGSSFDLPPSPQLLSARLAGSGFNRLPLSRKFPPLFQKVSATG 60

Query: 61  EKISVLGDWTQESSLQFCDESPVSIELKSICSELEFDKAITDAEKRNEPVIIVWMANWCR 120
           EK S+ G WTQ+S+LQF DESPVSIELKSI SELEFDKAI DAE+RNE VI+VWMANWCR
Sbjct: 61  EKTSLFGAWTQDSALQFRDESPVSIELKSISSELEFDKAIADAEERNELVILVWMANWCR 120

Query: 121 NYIYLKPQLERLAADYYPRLQFYCIDVNMVPHKLVVRAGLAKMPAIQLWKDSKKQDEVIG 180
           NYIYLKPQLERLAADYYPRLQFYCIDVN+VPHKLVVRAGLAKMPAIQLWKD KKQDEV+G
Sbjct: 121 NYIYLKPQLERLAADYYPRLQFYCIDVNVVPHKLVVRAGLAKMPAIQLWKDGKKQDEVVG 180

Query: 181 LYKAYLVVNDVQKMIERELTGE 197
           LYKAYLVVNDV+KMIERELT E
Sbjct: 181 LYKAYLVVNDVRKMIERELTDE 202

[Close]

BLAST of CmaCh18G009040 vs. NCBI nr
Match: gi|659092008|ref|XP_008446851.1| (PREDICTED: thioredoxin-like 3-2, chloroplastic isoform X7 [Cucumis melo])

HSP 1 Score: 328.9 bits (842), Expect = 5.9e-87
Identity = 165/206 (80.10%), Postives = 179/206 (86.89%), Query Frame = 1


Query: 1   MVKVLPVHFGTLKSFPKLDARFDLP------AAKLTVSGFNRLPLSQKFPPLSLKVSATG 60
           MVK LP+H G +KSFPK D+ FDLP      +A+L  SGFNRLPLS+KFPP+  KVSATG
Sbjct: 1   MVKALPLHLGIVKSFPKFDSSFDLPPSPQLLSARLPGSGFNRLPLSRKFPPIFQKVSATG 60

Query: 61  EKISVLGDWTQESSLQFCDESPVSIELKSICSELEFDKAITDAEKRNEPVIIVWMANWCR 120
           EK S+LG WTQ+S+LQF DESPVSIELKSI SELEFDKAI DAE+RNE VI+VWMANWCR
Sbjct: 61  EKTSLLGAWTQDSALQFRDESPVSIELKSISSELEFDKAIADAEERNELVILVWMANWCR 120

Query: 121 NYIYLKPQLERLAADYYPRLQFYCIDVNMVPHKLVVRAGLA----KMPAIQLWKDSKKQD 180
           NYIYLKPQLERLAADYYPRLQFYCIDVNMVPHKLVVRAGLA    KMPAIQLWKD KKQD
Sbjct: 121 NYIYLKPQLERLAADYYPRLQFYCIDVNMVPHKLVVRAGLAVGLEKMPAIQLWKDGKKQD 180

Query: 181 EVIGLYKAYLVVNDVQKMIERELTGE 197
           EV+GLYKAYLVVNDV+KMIERELT E
Sbjct: 181 EVVGLYKAYLVVNDVRKMIERELTDE 206

[Close]

BLAST of CmaCh18G009040 vs. NCBI nr
Match: gi|659092012|ref|XP_008446853.1| (PREDICTED: thioredoxin-like 3-2, chloroplastic isoform X9 [Cucumis melo])

HSP 1 Score: 328.2 bits (840), Expect = 1.0e-86
Identity = 164/202 (81.19%), Postives = 178/202 (88.12%), Query Frame = 1


Query: 1   MVKVLPVHFGTLKSFPKLDARFDLP------AAKLTVSGFNRLPLSQKFPPLSLKVSATG 60
           MVK LP+H G +KSFPK D+ FDLP      +A+L  SGFNRLPLS+KFPP+  KVSATG
Sbjct: 1   MVKALPLHLGIVKSFPKFDSSFDLPPSPQLLSARLPGSGFNRLPLSRKFPPIFQKVSATG 60

Query: 61  EKISVLGDWTQESSLQFCDESPVSIELKSICSELEFDKAITDAEKRNEPVIIVWMANWCR 120
           EK S+LG WTQ+S+LQF DESPVSIELKSI SELEFDKAI DAE+RNE VI+VWMANWCR
Sbjct: 61  EKTSLLGAWTQDSALQFRDESPVSIELKSISSELEFDKAIADAEERNELVILVWMANWCR 120

Query: 121 NYIYLKPQLERLAADYYPRLQFYCIDVNMVPHKLVVRAGLAKMPAIQLWKDSKKQDEVIG 180
           NYIYLKPQLERLAADYYPRLQFYCIDVNMVPHKLVVRAGLA MPAIQLWKD KKQDEV+G
Sbjct: 121 NYIYLKPQLERLAADYYPRLQFYCIDVNMVPHKLVVRAGLA-MPAIQLWKDGKKQDEVVG 180

Query: 181 LYKAYLVVNDVQKMIERELTGE 197
           LYKAYLVVNDV+KMIERELT E
Sbjct: 181 LYKAYLVVNDVRKMIERELTDE 201

[Close]

BLAST of CmaCh18G009040 vs. NCBI nr
Match: gi|659092004|ref|XP_008446849.1| (PREDICTED: thioredoxin-like 3-2, chloroplastic isoform X5 [Cucumis melo])

HSP 1 Score: 327.8 bits (839), Expect = 1.3e-86
Identity = 165/209 (78.95%), Postives = 179/209 (85.65%), Query Frame = 1


Query: 1   MVKVLPVHFGTLKSFPKLDARFDLP------AAKLTVSGFNRLPLSQKFPPLSLKVSATG 60
           MVK LP+H G +KSFPK D+ FDLP      +A+L  SGFNRLPLS+KFPP+  KVSATG
Sbjct: 1   MVKALPLHLGIVKSFPKFDSSFDLPPSPQLLSARLPGSGFNRLPLSRKFPPIFQKVSATG 60

Query: 61  EKISVLGDWTQESSLQFCDESPVSIELKSICSELEFDKAITDAEKRNEPVIIVWMANWCR 120
           EK S+LG WTQ+S+LQF DESPVSIELKSI SELEFDKAI DAE+RNE VI+VWMANWCR
Sbjct: 61  EKTSLLGAWTQDSALQFRDESPVSIELKSISSELEFDKAIADAEERNELVILVWMANWCR 120

Query: 121 NYIYLKPQLERLAADYYP-------RLQFYCIDVNMVPHKLVVRAGLAKMPAIQLWKDSK 180
           NYIYLKPQLERLAADYYP       RLQFYCIDVNMVPHKLVVRAGLAKMPAIQLWKD K
Sbjct: 121 NYIYLKPQLERLAADYYPSMCLMNCRLQFYCIDVNMVPHKLVVRAGLAKMPAIQLWKDGK 180

Query: 181 KQDEVIGLYKAYLVVNDVQKMIERELTGE 197
           KQDEV+GLYKAYLVVNDV+KMIERELT E
Sbjct: 181 KQDEVVGLYKAYLVVNDVRKMIERELTDE 209

The following BLAST results are available for this feature:

BLAST of CmaCh18G009040 vs. Swiss-Prot


Match Name	E-value	Identity	Description
TRL32_ARATH	3.6e-44	51.48	Thioredoxin-like 3-2, chloroplastic OS=Arabidopsis thaliana GN=WCRKC2 PE=2 SV=1	[more]
TRL31_ARATH	8.0e-28	46.55	Thioredoxin-like 3-1, chloroplastic OS=Arabidopsis thaliana GN=WCRKC1 PE=2 SV=3	[more]
TRL31_ORYSJ	6.4e-25	43.51	Thioredoxin-like 3-1, chloroplastic OS=Oryza sativa subsp. japonica GN=Os02g0774...	[more]
TRXH_CHLRE	2.3e-06	27.47	Thioredoxin H-type OS=Chlamydomonas reinhardtii GN=TRXH PE=1 SV=3	[more]

BLAST of CmaCh18G009040 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KUX7_CUCSA	2.4e-87	80.69	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G622670 PE=4 SV=1	[more]
D7TM63_VITVI	1.4e-47	56.98	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_13s0019g04650 PE=4 SV=...	[more]
A0A061FN59_THECC	7.0e-47	52.60	WCRKC thioredoxin 2 OS=Theobroma cacao GN=TCM_043218 PE=4 SV=1	[more]
A0A0D2UWR5_GOSRA	3.9e-45	53.85	Uncharacterized protein OS=Gossypium raimondii GN=B456_009G311900 PE=4 SV=1	[more]
A0A059ACK0_EUCGR	2.1e-43	56.21	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_J01067 PE=4 SV=1	[more]

BLAST of CmaCh18G009040 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G04260.1	2.0e-45	51.48	WCRKC thioredoxin 2	[more]
AT5G06690.2	3.0e-17	46.25	WCRKC thioredoxin 1	[more]

BLAST of CmaCh18G009040 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659092010\|ref\|XP_008446852.1\|	1.1e-88	81.68	PREDICTED: thioredoxin-like 3-2, chloroplastic isoform X8 [Cucumis melo]	[more]
gi\|778706568\|ref\|XP_004142496.2\|	3.4e-87	80.69	PREDICTED: thioredoxin-like 3-2, chloroplastic isoform X2 [Cucumis sativus]	[more]
gi\|659092008\|ref\|XP_008446851.1\|	5.9e-87	80.10	PREDICTED: thioredoxin-like 3-2, chloroplastic isoform X7 [Cucumis melo]	[more]
gi\|659092012\|ref\|XP_008446853.1\|	1.0e-86	81.19	PREDICTED: thioredoxin-like 3-2, chloroplastic isoform X9 [Cucumis melo]	[more]
gi\|659092004\|ref\|XP_008446849.1\|	1.3e-86	78.95	PREDICTED: thioredoxin-like 3-2, chloroplastic isoform X5 [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR005746	Thioredoxin
IPR012336	Thioredoxin-like_fold
IPR013766	Thioredoxin_domain

Vocabulary: **Biological Process**
Term	Definition
GO:0006662	glycerol ether metabolic process
GO:0045454	cell redox homeostasis

Vocabulary: **Molecular Function**
Term	Definition
GO:0015035	protein disulfide oxidoreductase activity

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045454	cell redox homeostasis
biological_process	GO:0006662	glycerol ether metabolic process
biological_process	GO:0055114	oxidation-reduction process
cellular_component	GO:0005623	cell
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0015035	protein disulfide oxidoreductase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh18G009040.1	CmaCh18G009040.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005746	Thioredoxin	PANTHER	PTHR10438	THIOREDOXIN	coord: 36..192 score: 3.3
IPR012336	Thioredoxin-like fold	GENE3D	G3DSA:3.40.30.10		coord: 80..191 score: 1.9
IPR012336	Thioredoxin-like fold	unknown	SSF52833	Thioredoxin-like	coord: 81..190 score: 8.07
IPR013766	Thioredoxin domain	PFAM	PF00085	Thioredoxin	coord: 88..179 score: 7.
IPR013766	Thioredoxin domain	PROFILE	PS51352	THIOREDOXIN_2	coord: 37..194 score: 9
None	No IPR available	PANTHER	PTHR10438:SF297	THIOREDOXIN-LIKE 3-2, CHLOROPLASTIC	coord: 36..192 score: 3.3

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh18G009040	Cucsa.308540	Cucumber (Gy14) v1	cgycmaB0849
CmaCh18G009040	Cla020547	Watermelon (97103) v1	cmawmB372
CmaCh18G009040	Csa5G622670	Cucumber (Chinese Long) v2	cmacuB417
CmaCh18G009040	MELO3C012410	Melon (DHL92) v3.5.1	cmameB351
CmaCh18G009040	ClCG05G021170	Watermelon (Charleston Gray)	cmawcgB364
CmaCh18G009040	CSPI05G26960	Wild cucumber (PI 183967)	cmacpiB423
CmaCh18G009040	CmoCh04G014500	Cucurbita moschata (Rifu)	cmacmoB420
CmaCh18G009040	CmoCh18G009080	Cucurbita moschata (Rifu)	cmacmoB406
CmaCh18G009040	Lsi04G000830	Bottle gourd (USVL1VR-Ls)	cmalsiB379
CmaCh18G009040	Cp4.1LG09g04000	Cucurbita pepo (Zucchini)	cmacpeB415
CmaCh18G009040	Cp4.1LG01g14670	Cucurbita pepo (Zucchini)	cmacpeB429
CmaCh18G009040	MELO3C012410.2	Melon (DHL92) v3.6.1	cmamedB408
CmaCh18G009040	CsaV3_5G036090	Cucumber (Chinese Long) v3	cmacucB0498
CmaCh18G009040	Cla97C05G102830	Watermelon (97103) v2	cmawmbB423
CmaCh18G009040	Bhi07G000720	Wax gourd	cmawgoB0544
CmaCh18G009040	CsGy5G026410	Cucumber (Gy14) v2	cgybcmaB626
CmaCh18G009040	Carg20706	Silver-seed gourd	carcmaB0672

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmaCh18G009040	CmaCh04G013780	Cucurbita maxima (Rimu)	cmacmaB402

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh18G009040	Melon (DHL92) v3.6.1	cmamedB431
CmaCh18G009040	Silver-seed gourd	carcmaB0964
CmaCh18G009040	Silver-seed gourd	carcmaB1167
CmaCh18G009040	Watermelon (97103) v2	cmawmbB435
CmaCh18G009040	Wax gourd	cmawgoB0512
CmaCh18G009040	Cucurbita maxima (Rimu)	cmacmaB401
CmaCh18G009040	Melon (DHL92) v3.5.1	cmameB374
CmaCh18G009040	Watermelon (Charleston Gray)	cmawcgB373
CmaCh18G009040	Watermelon (97103) v1	cmawmB365
CmaCh18G009040	Cucurbita pepo (Zucchini)	cmacpeB435
CmaCh18G009040	Bottle gourd (USVL1VR-Ls)	cmalsiB395
CmaCh18G009040	Cucumber (Gy14) v2	cgybcmaB770