CmaCh04G013780 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh04G013780
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Thioredoxin-like 3-2
Location	Cma_Chr04 : 7056428 .. 7057590 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AATTTTTCTTTTCCTTTTTGTTTTCTTCAACAAAATCAATTGGCGTTTCTTTCAGGTTTCTTTCAGGTTTTAGGAGGTCGATCGGAACAATCTCTGAACTACTCTGAATCTCCTGGTGGGACTCCACCGAAACCCTATCTAAGCCGCCGCCGCCGCCGTCGCAGTCGCCATCTCCACCCCGATTTAACCCACCAGCCGCTGTCCTCTGAATTTTTCTCTCCTTTTTCCGTTTTCCATCTGAAATGGTGAAAGCTTTGCCTCTTCACCTCGGGAGCGTGAAAATTTTTCCCAAATTCGACGGTTCTTTTGATCTTCCTTCGCTTCCACTGCTCCCGCCCGCGAGGCTCCCCGCCTCTGGTTTCAACAAGCTTCCTCTGTCCCGCAAATTTCCGCCGCTTTCCCAGAAAGTTTATGTGACTGATGAGAAGGTTTCGCTGCTTGGAGCTTGGACGCAAGAGAGTTCCCTGAAATTTCGAGATGAATCGCCTGTTTCGATGGAGCTCCAGTCCATTAGCAGCGAACTTGAATTCGATCAGGCTATTGCAGATGCGGAGGAACACAACGGGCTCGTGATTCTTGTATGGTATGCATACGTTTCTTGTGGGCTTTTCTAGGGTTTCACTGAAACAGAATACAAAATCCCTTCTGCTAAGCAATCCTGGGCGCTTGCTAAGGCCTTATTATGAATCACATAACCTCTGTTGTACATTAATTCTGATATTTTTCAACAGCTTTCCTTCAAGCCTTTCAAGAACATTTCTCTTTGTTTTACTTTCTTTCGTTGAAAAGTGAGTTTATGTGGATATGTAGGATGGCTAACTGGTGCAGAAATTATATTTATTTGATACCCCAATTGGAAAGATTGGCTGCTGATTATTGCCCCAGGTTAGCTCTTAGCCATTTGGTTGTACAAAAGAAATGGGCTAAGTCCTTATTGAAGTTGTGCTTGTTCTTGATGAATTTTAGATTGCAGTTCTACTGCATTGATGTCAATATGGTGCCACACAAGCTAGTTGTTCGTGCCGGATTAGCTGTAAGTTCCTTCCAAAGCTTGCAAATTATAGTGATCTTCTTTAGGTAGGATTTTACTTGAGTTCTTTTTACAATGGAAATTAGAACTTGTGTTTCATTACCTTTAGGAACGTTTCCAATTTGCAGTTTGA

mRNA sequence

AATTTTTCTTTTCCTTTTTGTTTTCTTCAACAAAATCAATTGGCGTTTCTTTCAGGTTTCTTTCAGGTTTTAGGAGGTCGATCGGAACAATCTCTGAACTACTCTGAATCTCCTGGTGGGACTCCACCGAAACCCTATCTAAGCCGCCGCCGCCGCCGTCGCAGTCGCCATCTCCACCCCGATTTAACCCACCAGCCGCTGTCCTCTGAATTTTTCTCTCCTTTTTCCGTTTTCCATCTGAAATGGTGAAAGCTTTGCCTCTTCACCTCGGGAGCGTGAAAATTTTTCCCAAATTCGACGGTTCTTTTGATCTTCCTTCGCTTCCACTGCTCCCGCCCGCGAGGCTCCCCGCCTCTGGTTTCAACAAGCTTCCTCTGTCCCGCAAATTTCCGCCGCTTTCCCAGAAAGTTTATGTGACTGATGAGAAGGTTTCGCTGCTTGGAGCTTGGACGCAAGAGAGTTCCCTGAAATTTCGAGATGAATCGCCTGTTTCGATGGAGCTCCAGTCCATTAGCAGCGAACTTGAATTCGATCAGGCTATTGCAGATGCGGAGGAACACAACGGGCTCGTGATTCTTGTATGGATGGCTAACTGGTGCAGAAATTATATTTATTTGATACCCCAATTGGAAAGATTGGCTGCTGATTATTGCCCCAGATTGCAGTTCTACTGCATTGATGTCAATATGGTGCCACACAAGCTAGTTGTTCGTGCCGGATTAGCTGAACGTTTCCAATTTGCAGTTTGA

Coding sequence (CDS)

ATGGTGAAAGCTTTGCCTCTTCACCTCGGGAGCGTGAAAATTTTTCCCAAATTCGACGGTTCTTTTGATCTTCCTTCGCTTCCACTGCTCCCGCCCGCGAGGCTCCCCGCCTCTGGTTTCAACAAGCTTCCTCTGTCCCGCAAATTTCCGCCGCTTTCCCAGAAAGTTTATGTGACTGATGAGAAGGTTTCGCTGCTTGGAGCTTGGACGCAAGAGAGTTCCCTGAAATTTCGAGATGAATCGCCTGTTTCGATGGAGCTCCAGTCCATTAGCAGCGAACTTGAATTCGATCAGGCTATTGCAGATGCGGAGGAACACAACGGGCTCGTGATTCTTGTATGGATGGCTAACTGGTGCAGAAATTATATTTATTTGATACCCCAATTGGAAAGATTGGCTGCTGATTATTGCCCCAGATTGCAGTTCTACTGCATTGATGTCAATATGGTGCCACACAAGCTAGTTGTTCGTGCCGGATTAGCTGAACGTTTCCAATTTGCAGTTTGA

Protein sequence

MVKALPLHLGSVKIFPKFDGSFDLPSLPLLPPARLPASGFNKLPLSRKFPPLSQKVYVTDEKVSLLGAWTQESSLKFRDESPVSMELQSISSELEFDQAIADAEEHNGLVILVWMANWCRNYIYLIPQLERLAADYCPRLQFYCIDVNMVPHKLVVRAGLAERFQFAV

Homology

[Close]

BLAST of CmaCh04G013780 vs. Swiss-Prot
Match: TRL32_ARATH (Thioredoxin-like 3-2, chloroplastic OS=Arabidopsis thaliana GN=WCRKC2 PE=2 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 4.9e-26
Identity = 59/135 (43.70%), Postives = 90/135 (66.67%), Query Frame = 1


Query: 28  PLLPPARLPASGFNKLPLSRKFPPLSQKVYVTDEKVSLLGAWTQESSLKFRDESPVSMEL 87
           PL+PP R  +S F++ P + K+   + K+ +  E++  +    Q+  L+  D+SPVS+EL
Sbjct: 20  PLVPPYRQTSSSFSR-PRNFKYHSFTDKICLAAERIRAVDIQKQDGGLQELDDSPVSVEL 79

Query: 88  QSISSELEFDQAIADAEEHNGLVILVWMANWCRNYIYLIPQLERLAADYCPRLQFYCIDV 147
             I  E  FDQ + DA++    V++VWMA WCR  IYL P+LE+LAA++ PRL+FY +DV
Sbjct: 80  GPICGESHFDQVMEDAQKLGESVVIVWMAAWCRKCIYLKPKLEKLAAEFYPRLRFYHVDV 139

Query: 148 NMVPHKLVVRAGLAE 163
           N VP++LV RAG+ +
Sbjct: 140 NAVPYRLVSRAGVTK 153

[Close]

BLAST of CmaCh04G013780 vs. Swiss-Prot
Match: TRL31_ARATH (Thioredoxin-like 3-1, chloroplastic OS=Arabidopsis thaliana GN=WCRKC1 PE=2 SV=3)

HSP 1 Score: 77.4 bits (189), Expect = 1.6e-13
Identity = 34/81 (41.98%), Postives = 55/81 (67.90%), Query Frame = 1


Query: 82  PVSMELQSISSELEFDQAIADAEEHNGLVILVWMANWCRNYIYLIPQLERLAADYCPRLQ 141
           P ++E++ I++  E D  ++ A + +  +I+ WMA+WCR  IYL P+LE+LAA+Y  R +
Sbjct: 93  PTTLEMEPINNVEELDAVLSHARQLSQPIIIEWMASWCRKCIYLKPKLEKLAAEYNNRAK 152

Query: 142 FYCIDVNMVPHKLVVRAGLAE 163
           FY +DVN VP  LV R  +++
Sbjct: 153 FYYVDVNKVPQTLVKRGNISK 173

[Close]

BLAST of CmaCh04G013780 vs. Swiss-Prot
Match: TRL31_ORYSJ (Thioredoxin-like 3-1, chloroplastic OS=Oryza sativa subsp. japonica GN=Os02g0774100 PE=3 SV=2)

HSP 1 Score: 66.2 bits (160), Expect = 3.8e-10
Identity = 30/78 (38.46%), Postives = 51/78 (65.38%), Query Frame = 1


Query: 85  MELQSISSELEFDQAIADAEEHNGLVILVWMANWCRNYIYLIPQLERLAADYCPRLQFYC 144
           +E++ I S  + D A+  + E+   +I+ WMA+WCR  IYL P+LE++A ++ P ++FY 
Sbjct: 80  VEMEEIDSMEKLDDALRWSVENKQPIIIDWMASWCRKCIYLKPRLEKIAGEF-PGVRFYF 139

Query: 145 IDVNMVPHKLVVRAGLAE 163
           +DVN VP  +V R  + +
Sbjct: 140 VDVNKVPQTVVKRGNITK 156

[Close]

BLAST of CmaCh04G013780 vs. TrEMBL
Match: A0A0A0KUX7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G622670 PE=4 SV=1)

HSP 1 Score: 260.8 bits (665), Expect = 1.2e-66
Identity = 131/162 (80.86%), Postives = 140/162 (86.42%), Query Frame = 1


Query: 1   MVKALPLHLGSVKIFPKFDGSFDLPSLPLLPPARLPASGFNKLPLSRKFPPLSQKVYVTD 60
           MVKALPLH G VK FPKF  SFDLP  P L  ARL  SGFN+LPLSRKFPPL QKV  T 
Sbjct: 1   MVKALPLHHGIVKSFPKFGSSFDLPPSPQLLSARLAGSGFNRLPLSRKFPPLFQKVSATG 60

Query: 61  EKVSLLGAWTQESSLKFRDESPVSMELQSISSELEFDQAIADAEEHNGLVILVWMANWCR 120
           EK SL GAWTQ+S+L+FRDESPVS+EL+SISSELEFD+AIADAEE N LVILVWMANWCR
Sbjct: 61  EKTSLFGAWTQDSALQFRDESPVSIELKSISSELEFDKAIADAEERNELVILVWMANWCR 120

Query: 121 NYIYLIPQLERLAADYCPRLQFYCIDVNMVPHKLVVRAGLAE 163
           NYIYL PQLERLAADY PRLQFYCIDVN+VPHKLVVRAGLA+
Sbjct: 121 NYIYLKPQLERLAADYYPRLQFYCIDVNVVPHKLVVRAGLAK 162

[Close]

BLAST of CmaCh04G013780 vs. TrEMBL
Match: D7TM63_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_13s0019g04650 PE=4 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 1.5e-26
Identity = 67/144 (46.53%), Postives = 92/144 (63.89%), Query Frame = 1


Query: 24  LPSLP-----LLPPARLPASGFNKLPLSRKFPPLSQKVYVTDEKVSLLGAWTQESSLKFR 83
           LP+ P     +L    +P    +  P  RK     QK+ V+  KV  L AW QE  L+  
Sbjct: 15  LPTTPRGSSRILQQFSIPGLSISDFP--RKSLNFPQKIGVSGGKVWALAAWNQEGPLQDL 74

Query: 84  DESPVSMELQSISSELEFDQAIADAEEHNGLVILVWMANWCRNYIYLIPQLERLAADYCP 143
           D+SPVS+EL+ ISS+ +FD+ + +A++    V +VWMA WCR  IYL P+LE+LAA+Y P
Sbjct: 75  DDSPVSVELKPISSDTQFDRILGEAQQLEESVAIVWMATWCRKCIYLKPKLEKLAAEYYP 134

Query: 144 RLQFYCIDVNMVPHKLVVRAGLAE 163
           RL+FYC+DVN VPHKLV RA + +
Sbjct: 135 RLRFYCVDVNTVPHKLVARAAVTK 156

[Close]

BLAST of CmaCh04G013780 vs. TrEMBL
Match: W9SA32_9ROSA (Thioredoxin-like 3-2 OS=Morus notabilis GN=L484_013033 PE=4 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 5.9e-26
Identity = 60/97 (61.86%), Postives = 76/97 (78.35%), Query Frame = 1


Query: 68  AWTQE--SSLKFRDESPVSMELQSISSELEFDQAIADAEEHNGLVILVWMANWCRNYIYL 127
           AW Q+  SSL+  DESP S+EL  +SSE +FD+ IADA + +  +I +WMA+WCR  IYL
Sbjct: 72  AWNQQEGSSLQELDESPASVELTPVSSETQFDRLIADAHQLDESLIFLWMASWCRKCIYL 131

Query: 128 IPQLERLAADYCPRLQFYCIDVNMVPHKLVVRAGLAE 163
            P+LE+LAADY PRL+FYC+DVNMVPHKLV RAG+ E
Sbjct: 132 KPKLEKLAADYYPRLRFYCVDVNMVPHKLVARAGVTE 168

[Close]

BLAST of CmaCh04G013780 vs. TrEMBL
Match: A0A061FN59_THECC (WCRKC thioredoxin 2 OS=Theobroma cacao GN=TCM_043218 PE=4 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 2.2e-25
Identity = 59/132 (44.70%), Postives = 89/132 (67.42%), Query Frame = 1


Query: 31  PPARLPASGFNKLPLSRKFPPLSQKVYVTDEKVSLLGAWTQESSLKFRDESPVSMELQSI 90
           P  + P S F+ L L RK    S+++     K  +  AW ++  L+  D++P+++ELQ I
Sbjct: 33  PFLKNPCSSFDGLSLKRKTLSFSERINRFGGKFGIFNAWKKDGYLEELDDAPLAVELQQI 92

Query: 91  SSELEFDQAIADAEEHNGLVILVWMANWCRNYIYLIPQLERLAADYCPRLQFYCIDVNMV 150
            SE +FD+ IA+A++    +I++WMA+WCR  IYL P+LE+LAA+Y PRL+FY +DVN V
Sbjct: 93  CSESQFDRVIAEAQQLEESLIILWMASWCRKCIYLKPKLEKLAAEYYPRLRFYRVDVNTV 152

Query: 151 PHKLVVRAGLAE 163
           PH LV RAG+ +
Sbjct: 153 PHNLVARAGVTK 164

[Close]

BLAST of CmaCh04G013780 vs. TrEMBL
Match: A0A0B0PKK5_GOSAR (Thioredoxin-like 3-2, chloroplastic OS=Gossypium arboreum GN=F383_05200 PE=4 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 2.9e-25
Identity = 61/137 (44.53%), Postives = 88/137 (64.23%), Query Frame = 1


Query: 24  LPSLPLLPPARLPASGFNKLPLSRKFPPLSQKVYVTDEKVSLLGAWTQESSLKFRDESPV 83
           LP   +    + P S F    L RK    ++K+        +  AW +E  L+  D++P+
Sbjct: 27  LPCFSVSFSKKTPCSSFG-FCLKRKILGFNEKINGFGGNFGIFSAWREEGQLEELDDAPL 86

Query: 84  SMELQSISSELEFDQAIADAEEHNGLVILVWMANWCRNYIYLIPQLERLAADYCPRLQFY 143
           ++ELQ I SE +FD+ IA+A++    +I++WMA+WCR  IYL P+LE+LAADY PRL+FY
Sbjct: 87  TVELQQICSESQFDRVIAEAQQLEESLIILWMASWCRKCIYLKPKLEKLAADYYPRLRFY 146

Query: 144 CIDVNMVPHKLVVRAGL 161
           C+DVN VPH LV RAG+
Sbjct: 147 CVDVNTVPHNLVARAGV 162

[Close]

BLAST of CmaCh04G013780 vs. TAIR10
Match: AT5G04260.1 (AT5G04260.1 WCRKC thioredoxin 2)

HSP 1 Score: 119.0 bits (297), Expect = 2.8e-27
Identity = 59/135 (43.70%), Postives = 90/135 (66.67%), Query Frame = 1


Query: 28  PLLPPARLPASGFNKLPLSRKFPPLSQKVYVTDEKVSLLGAWTQESSLKFRDESPVSMEL 87
           PL+PP R  +S F++ P + K+   + K+ +  E++  +    Q+  L+  D+SPVS+EL
Sbjct: 20  PLVPPYRQTSSSFSR-PRNFKYHSFTDKICLAAERIRAVDIQKQDGGLQELDDSPVSVEL 79

Query: 88  QSISSELEFDQAIADAEEHNGLVILVWMANWCRNYIYLIPQLERLAADYCPRLQFYCIDV 147
             I  E  FDQ + DA++    V++VWMA WCR  IYL P+LE+LAA++ PRL+FY +DV
Sbjct: 80  GPICGESHFDQVMEDAQKLGESVVIVWMAAWCRKCIYLKPKLEKLAAEFYPRLRFYHVDV 139

Query: 148 NMVPHKLVVRAGLAE 163
           N VP++LV RAG+ +
Sbjct: 140 NAVPYRLVSRAGVTK 153

[Close]

BLAST of CmaCh04G013780 vs. TAIR10
Match: AT5G06690.2 (AT5G06690.2 WCRKC thioredoxin 1)

HSP 1 Score: 76.6 bits (187), Expect = 1.6e-14
Identity = 34/80 (42.50%), Postives = 54/80 (67.50%), Query Frame = 1


Query: 82  PVSMELQSISSELEFDQAIADAEEHNGLVILVWMANWCRNYIYLIPQLERLAADYCPRLQ 141
           P ++E++ I++  E D  ++ A + +  +I+ WMA+WCR  IYL P+LE+LAA+Y  R +
Sbjct: 93  PTTLEMEPINNVEELDAVLSHARQLSQPIIIEWMASWCRKCIYLKPKLEKLAAEYNNRAK 152

Query: 142 FYCIDVNMVPHKLVVRAGLA 162
           FY +DVN VP  LV R  ++
Sbjct: 153 FYYVDVNKVPQTLVKRGNIS 172

[Close]

BLAST of CmaCh04G013780 vs. NCBI nr
Match: gi|659092010|ref|XP_008446852.1| (PREDICTED: thioredoxin-like 3-2, chloroplastic isoform X8 [Cucumis melo])

HSP 1 Score: 271.6 bits (693), Expect = 9.5e-70
Identity = 135/162 (83.33%), Postives = 144/162 (88.89%), Query Frame = 1


Query: 1   MVKALPLHLGSVKIFPKFDGSFDLPSLPLLPPARLPASGFNKLPLSRKFPPLSQKVYVTD 60
           MVKALPLHLG VK FPKFD SFDLP  P L  ARLP SGFN+LPLSRKFPP+ QKV  T 
Sbjct: 1   MVKALPLHLGIVKSFPKFDSSFDLPPSPQLLSARLPGSGFNRLPLSRKFPPIFQKVSATG 60

Query: 61  EKVSLLGAWTQESSLKFRDESPVSMELQSISSELEFDQAIADAEEHNGLVILVWMANWCR 120
           EK SLLGAWTQ+S+L+FRDESPVS+EL+SISSELEFD+AIADAEE N LVILVWMANWCR
Sbjct: 61  EKTSLLGAWTQDSALQFRDESPVSIELKSISSELEFDKAIADAEERNELVILVWMANWCR 120

Query: 121 NYIYLIPQLERLAADYCPRLQFYCIDVNMVPHKLVVRAGLAE 163
           NYIYL PQLERLAADY PRLQFYCIDVNMVPHKLVVRAGLA+
Sbjct: 121 NYIYLKPQLERLAADYYPRLQFYCIDVNMVPHKLVVRAGLAK 162

[Close]

BLAST of CmaCh04G013780 vs. NCBI nr
Match: gi|659092012|ref|XP_008446853.1| (PREDICTED: thioredoxin-like 3-2, chloroplastic isoform X9 [Cucumis melo])

HSP 1 Score: 270.8 bits (691), Expect = 1.6e-69
Identity = 135/161 (83.85%), Postives = 143/161 (88.82%), Query Frame = 1


Query: 1   MVKALPLHLGSVKIFPKFDGSFDLPSLPLLPPARLPASGFNKLPLSRKFPPLSQKVYVTD 60
           MVKALPLHLG VK FPKFD SFDLP  P L  ARLP SGFN+LPLSRKFPP+ QKV  T 
Sbjct: 1   MVKALPLHLGIVKSFPKFDSSFDLPPSPQLLSARLPGSGFNRLPLSRKFPPIFQKVSATG 60

Query: 61  EKVSLLGAWTQESSLKFRDESPVSMELQSISSELEFDQAIADAEEHNGLVILVWMANWCR 120
           EK SLLGAWTQ+S+L+FRDESPVS+EL+SISSELEFD+AIADAEE N LVILVWMANWCR
Sbjct: 61  EKTSLLGAWTQDSALQFRDESPVSIELKSISSELEFDKAIADAEERNELVILVWMANWCR 120

Query: 121 NYIYLIPQLERLAADYCPRLQFYCIDVNMVPHKLVVRAGLA 162
           NYIYL PQLERLAADY PRLQFYCIDVNMVPHKLVVRAGLA
Sbjct: 121 NYIYLKPQLERLAADYYPRLQFYCIDVNMVPHKLVVRAGLA 161

[Close]

BLAST of CmaCh04G013780 vs. NCBI nr
Match: gi|659091998|ref|XP_008446846.1| (PREDICTED: thioredoxin-like 3-2, chloroplastic isoform X2 [Cucumis melo])

HSP 1 Score: 270.8 bits (691), Expect = 1.6e-69
Identity = 135/161 (83.85%), Postives = 143/161 (88.82%), Query Frame = 1


Query: 1   MVKALPLHLGSVKIFPKFDGSFDLPSLPLLPPARLPASGFNKLPLSRKFPPLSQKVYVTD 60
           MVKALPLHLG VK FPKFD SFDLP  P L  ARLP SGFN+LPLSRKFPP+ QKV  T 
Sbjct: 1   MVKALPLHLGIVKSFPKFDSSFDLPPSPQLLSARLPGSGFNRLPLSRKFPPIFQKVSATG 60

Query: 61  EKVSLLGAWTQESSLKFRDESPVSMELQSISSELEFDQAIADAEEHNGLVILVWMANWCR 120
           EK SLLGAWTQ+S+L+FRDESPVS+EL+SISSELEFD+AIADAEE N LVILVWMANWCR
Sbjct: 61  EKTSLLGAWTQDSALQFRDESPVSIELKSISSELEFDKAIADAEERNELVILVWMANWCR 120

Query: 121 NYIYLIPQLERLAADYCPRLQFYCIDVNMVPHKLVVRAGLA 162
           NYIYL PQLERLAADY PRLQFYCIDVNMVPHKLVVRAGLA
Sbjct: 121 NYIYLKPQLERLAADYYPRLQFYCIDVNMVPHKLVVRAGLA 161

[Close]

BLAST of CmaCh04G013780 vs. NCBI nr
Match: gi|659092008|ref|XP_008446851.1| (PREDICTED: thioredoxin-like 3-2, chloroplastic isoform X7 [Cucumis melo])

HSP 1 Score: 270.8 bits (691), Expect = 1.6e-69
Identity = 135/161 (83.85%), Postives = 143/161 (88.82%), Query Frame = 1


Query: 1   MVKALPLHLGSVKIFPKFDGSFDLPSLPLLPPARLPASGFNKLPLSRKFPPLSQKVYVTD 60
           MVKALPLHLG VK FPKFD SFDLP  P L  ARLP SGFN+LPLSRKFPP+ QKV  T 
Sbjct: 1   MVKALPLHLGIVKSFPKFDSSFDLPPSPQLLSARLPGSGFNRLPLSRKFPPIFQKVSATG 60

Query: 61  EKVSLLGAWTQESSLKFRDESPVSMELQSISSELEFDQAIADAEEHNGLVILVWMANWCR 120
           EK SLLGAWTQ+S+L+FRDESPVS+EL+SISSELEFD+AIADAEE N LVILVWMANWCR
Sbjct: 61  EKTSLLGAWTQDSALQFRDESPVSIELKSISSELEFDKAIADAEERNELVILVWMANWCR 120

Query: 121 NYIYLIPQLERLAADYCPRLQFYCIDVNMVPHKLVVRAGLA 162
           NYIYL PQLERLAADY PRLQFYCIDVNMVPHKLVVRAGLA
Sbjct: 121 NYIYLKPQLERLAADYYPRLQFYCIDVNMVPHKLVVRAGLA 161

[Close]

BLAST of CmaCh04G013780 vs. NCBI nr
Match: gi|659092004|ref|XP_008446849.1| (PREDICTED: thioredoxin-like 3-2, chloroplastic isoform X5 [Cucumis melo])

HSP 1 Score: 264.6 bits (675), Expect = 1.2e-67
Identity = 135/169 (79.88%), Postives = 144/169 (85.21%), Query Frame = 1


Query: 1   MVKALPLHLGSVKIFPKFDGSFDLPSLPLLPPARLPASGFNKLPLSRKFPPLSQKVYVTD 60
           MVKALPLHLG VK FPKFD SFDLP  P L  ARLP SGFN+LPLSRKFPP+ QKV  T 
Sbjct: 1   MVKALPLHLGIVKSFPKFDSSFDLPPSPQLLSARLPGSGFNRLPLSRKFPPIFQKVSATG 60

Query: 61  EKVSLLGAWTQESSLKFRDESPVSMELQSISSELEFDQAIADAEEHNGLVILVWMANWCR 120
           EK SLLGAWTQ+S+L+FRDESPVS+EL+SISSELEFD+AIADAEE N LVILVWMANWCR
Sbjct: 61  EKTSLLGAWTQDSALQFRDESPVSIELKSISSELEFDKAIADAEERNELVILVWMANWCR 120

Query: 121 NYIYLIPQLERLAADYCP-------RLQFYCIDVNMVPHKLVVRAGLAE 163
           NYIYL PQLERLAADY P       RLQFYCIDVNMVPHKLVVRAGLA+
Sbjct: 121 NYIYLKPQLERLAADYYPSMCLMNCRLQFYCIDVNMVPHKLVVRAGLAK 169

The following BLAST results are available for this feature:

BLAST of CmaCh04G013780 vs. Swiss-Prot


Match Name	E-value	Identity	Description
TRL32_ARATH	4.9e-26	43.70	Thioredoxin-like 3-2, chloroplastic OS=Arabidopsis thaliana GN=WCRKC2 PE=2 SV=1	[more]
TRL31_ARATH	1.6e-13	41.98	Thioredoxin-like 3-1, chloroplastic OS=Arabidopsis thaliana GN=WCRKC1 PE=2 SV=3	[more]
TRL31_ORYSJ	3.8e-10	38.46	Thioredoxin-like 3-1, chloroplastic OS=Oryza sativa subsp. japonica GN=Os02g0774...	[more]

BLAST of CmaCh04G013780 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KUX7_CUCSA	1.2e-66	80.86	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G622670 PE=4 SV=1	[more]
D7TM63_VITVI	1.5e-26	46.53	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_13s0019g04650 PE=4 SV=...	[more]
W9SA32_9ROSA	5.9e-26	61.86	Thioredoxin-like 3-2 OS=Morus notabilis GN=L484_013033 PE=4 SV=1	[more]
A0A061FN59_THECC	2.2e-25	44.70	WCRKC thioredoxin 2 OS=Theobroma cacao GN=TCM_043218 PE=4 SV=1	[more]
A0A0B0PKK5_GOSAR	2.9e-25	44.53	Thioredoxin-like 3-2, chloroplastic OS=Gossypium arboreum GN=F383_05200 PE=4 SV=...	[more]

BLAST of CmaCh04G013780 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G04260.1	2.8e-27	43.70	WCRKC thioredoxin 2	[more]
AT5G06690.2	1.6e-14	42.50	WCRKC thioredoxin 1	[more]

BLAST of CmaCh04G013780 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659092010\|ref\|XP_008446852.1\|	9.5e-70	83.33	PREDICTED: thioredoxin-like 3-2, chloroplastic isoform X8 [Cucumis melo]	[more]
gi\|659092012\|ref\|XP_008446853.1\|	1.6e-69	83.85	PREDICTED: thioredoxin-like 3-2, chloroplastic isoform X9 [Cucumis melo]	[more]
gi\|659091998\|ref\|XP_008446846.1\|	1.6e-69	83.85	PREDICTED: thioredoxin-like 3-2, chloroplastic isoform X2 [Cucumis melo]	[more]
gi\|659092008\|ref\|XP_008446851.1\|	1.6e-69	83.85	PREDICTED: thioredoxin-like 3-2, chloroplastic isoform X7 [Cucumis melo]	[more]
gi\|659092004\|ref\|XP_008446849.1\|	1.2e-67	79.88	PREDICTED: thioredoxin-like 3-2, chloroplastic isoform X5 [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR005746	Thioredoxin
IPR012336	Thioredoxin-like_fold

Vocabulary: **Biological Process**
Term	Definition
GO:0006662	glycerol ether metabolic process
GO:0045454	cell redox homeostasis

Vocabulary: **Molecular Function**
Term	Definition
GO:0015035	protein disulfide oxidoreductase activity

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045454	cell redox homeostasis
biological_process	GO:0006662	glycerol ether metabolic process
biological_process	GO:0055114	oxidation-reduction process
cellular_component	GO:0005623	cell
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0015035	protein disulfide oxidoreductase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh04G013780.1	CmaCh04G013780.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005746	Thioredoxin	PANTHER	PTHR10438	THIOREDOXIN	coord: 24..159 score: 1.0
IPR012336	Thioredoxin-like fold	GENE3D	G3DSA:3.40.30.10		coord: 84..151 score: 5.
IPR012336	Thioredoxin-like fold	unknown	SSF52833	Thioredoxin-like	coord: 79..149 score: 3.9
None	No IPR available	PANTHER	PTHR10438:SF297	THIOREDOXIN-LIKE 3-2, CHLOROPLASTIC	coord: 24..159 score: 1.0

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh04G013780	Cla020547	Watermelon (97103) v1	cmawmB699
CmaCh04G013780	Csa5G622670	Cucumber (Chinese Long) v2	cmacuB748
CmaCh04G013780	ClCG05G021170	Watermelon (Charleston Gray)	cmawcgB655
CmaCh04G013780	CmoCh18G009080	Cucurbita moschata (Rifu)	cmacmoB706
CmaCh04G013780	CmoCh04G014500	Cucurbita moschata (Rifu)	cmacmoB728
CmaCh04G013780	Lsi04G000830	Bottle gourd (USVL1VR-Ls)	cmalsiB669
CmaCh04G013780	Cp4.1LG01g14670	Cucurbita pepo (Zucchini)	cmacpeB720
CmaCh04G013780	Cla97C05G102830	Watermelon (97103) v2	cmawmbB758
CmaCh04G013780	Bhi07G000720	Wax gourd	cmawgoB0903
CmaCh04G013780	CsGy5G026410	Cucumber (Gy14) v2	cgybcmaB672
CmaCh04G013780	Carg20706	Silver-seed gourd	carcmaB0673
CmaCh04G013780	Carg01948	Silver-seed gourd	carcmaB1170

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmaCh04G013780	CmaCh18G009040	Cucurbita maxima (Rimu)	cmacmaB402

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh04G013780	Silver-seed gourd	carcmaB0370
CmaCh04G013780	Silver-seed gourd	carcmaB0966
CmaCh04G013780	Cucumber (Chinese Long) v3	cmacucB0885
CmaCh04G013780	Watermelon (97103) v2	cmawmbB787
CmaCh04G013780	Wax gourd	cmawgoB0873
CmaCh04G013780	Cucurbita maxima (Rimu)	cmacmaB536
CmaCh04G013780	Cucumber (Gy14) v1	cgycmaB0850
CmaCh04G013780	Cucurbita moschata (Rifu)	cmacmoB740
CmaCh04G013780	Wild cucumber (PI 183967)	cmacpiB755
CmaCh04G013780	Melon (DHL92) v3.5.1	cmameB640
CmaCh04G013780	Watermelon (Charleston Gray)	cmawcgB679
CmaCh04G013780	Watermelon (97103) v1	cmawmB667
CmaCh04G013780	Cucurbita pepo (Zucchini)	cmacpeB700
CmaCh04G013780	Cucurbita pepo (Zucchini)	cmacpeB712
CmaCh04G013780	Cucurbita pepo (Zucchini)	cmacpeB734
CmaCh04G013780	Bottle gourd (USVL1VR-Ls)	cmalsiB706
CmaCh04G013780	Melon (DHL92) v3.6.1	cmamedB726